Silicon-mediated genotoxic alterations in Brassica juncea under arsenic stress: A comparative study of biochemical and molecular markers

Arsenic (As), one of the most harmful toxicant at the global level, severely affects plant metabolism when taken up. Interestingly, the presence of silicon (Si) as a fertilizer in As-contaminated soil is an effective strategy to decrease As accumulation in plants. Brassica juncea (var. Varuna) were grown hydroponically to investigate the role of Si at biochemical and molecular levels under arsenite (As³⁺) stress. Seedlings of B. juncea were exposed to As³⁺, Si, and a combination of both elements. Our data demonstrated that seedlings exposed to As³⁺ showed an inhibition in shoot length, chlorophyll, carotenoid, and protein, while co-application of Si improved these growth parameters. Silicon supplementation reduced As accumulation in shoot. Increase/decrease was observed in stress-related parameters (cysteine and proline), antioxidant enzymes (superoxide dismutase, ascorbate peroxidase, and catalase), and oxidative stress markers (malondialdehyde and H₂O₂), which were improved upon co-application of Si as compared to As³⁺ alone treatment. Random amplified polymorphic DNA (RAPD) is a suitable biomarker assay for plants for assessing the genotoxicity. Seven RAPD primers produced a total of 39 and 48 bands in the leaves of the untreated and treated seedlings, respectively. The RAPD band-profiles and genomic template stability were consistent with other growth and physiological parameters. In conclusion, the genotoxic alterations along with the biochemical parameters indicate that the exposure to Si mitigates As³⁺-induced oxidative stress by improving the stress-related parameters and antioxidant system in B. juncea.     

Studies of Wet Deposition and Dustfall at Pune, India

Rain water and dustfall deposition samples were collected at Pune, an urban site (1992–98) and at Sinhagad, a rural site (1992–94). The samples were collected with wet-only and bulk collectors at Pune and with bulk collector at Sinhagad. The samples were analyzed for major ions, pH and conductivity. The study showed that the rain water at both places is alkaline (pH > 5.6). The average pH at Pune was 6.1. Neutralising components, indicated by Ca and non sea salt (nss) Mg have higher concentrations than the acidifying components SO₄ and NO₃. The wet deposition fluxes of all the ionic components were higher than the dustfall fluxes. Relative contribution from dustfall was largest for K, Ca, Mg and NO₃. Dustfall was greater at Pune, compared to Sinhagad for all components and up to double for Ca.     

Precipitation chemistry at sinhagad-a hill station in India

The chemistry of precipitation in remote sites such as mountain tops is of interest in the study of atmospheric pollution and acid rain. The chemical composition measured at mountain site which is away from industrial and urban areas is useful as a reference level and it allows to determine the extent of anthropogenic contamination. Hence, rain water samples were collected at Sinhagad (18°21N, 73°45E, 1450 m asl during the monsoon season (June-September) of 1992 and were analysed for major ions. The precipitation samples collected at Sinhagad were alkaline in nature and pH values ranged between 5.9 to 6.76. The ionic composition was dominated by soil dust The concentration of Ca²⁺ was highest among all the ions. The concentrations of excess SO₃ ^2– and NO₄ ^– were small (23.8 and 15.2 eq l^–1 respectively) compared to the values of polluted regions in India. The correlation coefficient between the ions and pH values was calculated and it was found to be maximum in case of Ca²⁺. Precipitation samples collected at Sinhagad were alkaline owing to higher concentration of Ca²⁺ and lower levels of acidic pollutants (SO₄ ^2– and NO₃ ^–).     

Observations of Aitken nuclei and trace gases in different environments in India

Surface measurements of Aitken nuclei have been made at a few representative environments in India. The periods of measurements have ranged from a few days to a few years depending upon the place of measurement. Aircraft measurements of Aitken nuclei were made at one of the locations during three successive monsoon periods. During part of the time simultaneous measurements were made of the trace gases SO₂, NH₃, NO₂, and O₃. The study presents the seasonal and diurnal variation of Aitken nuclei in the different environments and their association with the trace gas concentrations.     

Decomposition of Bacillus thuringiensis (Bt) transgenic rice residues (straw and roots) in paddy fields

Background, aim, and scope  

Genetic modification of commercial crops may affect their decomposition and nutrient cycling processes in agricultural ecosystems. Intensive rice cultivation under partially submerged conditions (paddy rice) is an important and widespread cropping system, particularly in the tropics, yet there is little data on the decomposition of Bt rice residue under field conditions. We investigated straw and root decomposition of rice modified to express the Cry1Ab protein of Bacillus thuringiensis (Bt) to kill lepidopteran pests, compared with a parental non-Bt isoline. The objective of this study was to assess the possible impacts of cry gene transformation of rice on residue decomposition under intensive rice cultivation with long period of submergence.     

Determination of Chemical Composition and Nutritive Value with Fatty Acid Compositions of African Mangosteen (<Emphasis Type="Italic">Garcinia Livingstonei</Emphasis>)

African mangosteen (Garcinia livingstonei T. Anderson) is native to Africa and is exotic to other parts of the world. It is a fruit bearing tree with multiple uses. This study was purposed to determine, by analysis, the chemical compositions and nutritive value of the fruits of African mangosteen. Proximate compositions varied with the portions such as epicarp, mesocarp, endocarp and seed tested. All fruit portions contained carbohydrate (37.67–95.02%) and crude protein (0.65–31.76%) as their major components. Moisture (0.45–3.42%), crude fat (1.23–19.55%), crude fiber (2.93–21.13%) and ash (1.76–5.44%) were also found at different levels, depending upon the portions. All portions of fruit were rich in macro and micro elements. The fruits also possessed phenolics (174.02–10.725?mg GAE per g), flavonoid (19.25 to 99.98?µg QE per g) and alkaloid (1.56 to 9.49?mg/kg) contents. The constitution of tannins and oxalate which contribute towards the anti-nutritive value was also low, thus making the fruits beneficial for consumption. Quality attributes like relative amount of oleic acid, total unsaturated fatty acid, acid value, free fatty acid, peroxide value and iodine value showed that the seed oil of African mangosteen can become one among the oleic acid based vegetable oils for consumption.     

Impact of alkaline particulates on pH of rain water in India

Rain water samples were collected over a period of a decade from 1974 in Pune, a city which is relatively free from industrial pollution. They were also collected at 4 places during 1974 in the region of Bombay which is highly industrialized. The samples were analyzed for major chemical components and pH. The ionic balance was computed. Samples were collected at Delhi during 1965 and 1966 and were analyzed for pH. The values were compared with those reported for 1978. The total suspended particulates (TSP) were measured at Delhi during 1980 and analyzed for water soluble components. The rain water at all the places except near the industrial source was not acidic and was characterized by the presence of excess cations, particularly Ca. The acid rain near the industrial source was associated with excess anions, especially sulphate. The difference between the cations and anions was inversely proportional to the H⁺ ion concentration. The pH of rain water at Delhi which was in the alkaline range during 1965 and 1966 remained alkaline even after a period of 12 yr when the city developed industrially. The TSP in the region was rich with the basic components, mainly Ca, suggesting that the alkaline property of the soil dust is mainly responsible for neutralizing the acidic effects resulting from the anthropogenic gaseous pollutants.     

Soil microbial community responses to Bt transgenic rice residue decomposition in a paddy field

Purpose

Genetic modifications (GM) of commercial crops offer many benefits. However, microbial-mediated decomposition might be affected by GM crop residues in agricultural ecosystems. The objective of this study was to assess the possible impacts of cry1Ab gene transformation of rice on soil microbial community composition associated with residue decomposition in the paddy field under intensive rice cultivation.

Materials and methods

A 276-day field trial was set up as a completely randomized design for two types of rice residues, KMD (Bt) and Xiushui 11 (non-Bt parental variety) in triplicate by conventional intensive rice cropping system. The litterbag method was used in the rice residue decomposition and a total of 120 straw and root litterbags were either placed on the soil surface or buried at 10 cm depth in the field on Dec. 24, 2005. The litterbags were sampled periodically and their soil bacterial and fungal communities were determined by terminal restriction fragment length polymorphism (T-RFLP). The additive main effects with multiplicative interaction (AMMI) model were performed for the analysis of T-RFLP on binary variables of peak presence (presence/absence). The analysis of variance and linear regressions were performed for analysis of AMMI data.

Results and discussion

Total AMMI model analysis revealed that microbial community composition in the litterbags was affected by temporal and spatial factors. Compared with the non-Bt rice residue treatment, Bt rice straw had no significant effects on the soil bacterial and fungal community composition during the study period, regardless of the litterbags being placed on the surface or buried in the soil. There were no significant differences in the bacterial community composition profiles in root decomposition between Bt transgenic and non-Bt varieties. However, significant differences in soil fungal community composition between the buried Bt and non-Bt rice roots were observed in soils sampled on days 31, 68, and 137, indicating that Bt roots incorporated into paddy soil may affect soil fungal community during the initial stage of their decomposition.

Conclusions

There were some significant differences in fungal community composition between Bt rice root and non-Bt root treatments at the early stage of root decomposition in the paddy field. It is important that, before Bt rice is released for commercial production, more research should be conducted to evaluate the ecological effects of the Bt rice residues returned to paddy field upon grain harvesting.     

Methane oxidation activity and bacterial community composition in a simulated landfill cover soil is influenced by the growth of Chenopodium album L.

Oxygen availability in landfill cover soil is a major limitation to the growth and activity of methanotrophs as methane oxidation is an aerobic microbial process. Plants tolerant to high concentrations of landfill gas (LFG) may play an important role in improving methane oxidation within landfill cover soil and reducing emission of methane, a greenhouse gas, from it. In this study, the effect of an LFG tolerant plant Chenopodium album L. on methane oxidation activity (MOA) and bacterial community composition in landfill cover soil was investigated. Soil samples from four simulated lysimeters with and without LFG and plant vegetation were taken at 4 stages during the plant's development cycle. Results showed that the total number of culturable bacteria in soil could be significantly increased (P < 0.05) by the growth of C. album. The total number of methanotrophs and MOA in soils with LFG was significantly higher (P < 0.05) than in soils without LFG on sampling days 90, 150 and 210. The total number of methanotrophs and MOA in lysimeters with LFG added increased in the presence of C. album when the plant entered the seed setting stage. Polymerase chain reaction and denaturing gradient gel electrophoresis (PCR-DGGE) gel patterns of 16S rDNA gene fragment and band sequencing analyses showed apparent differences in soil bacterial communities in the presence of LFG and plant vegetation. Members of the genus Methylosarcina were found to be the active and dominant methanotrophs in rhizosphere soil of C. album with LFG, while Methylococcus, Methylocystis, and Methylosinus were the primary methanotroph genera in LFG soil without C. album. Thus, C. album appears to select for specific methanotrophic bacteria in the presence of LFG. Soil MOA and microbial diversity can also be significantly affected by the presence of this plant.