Phylogenetic and Molecular Characterization of the Equine Influenza Virus A (H3N8) Causing the 1997 and 2004 Outbreaks in Morocco

Reported here are the results of antigenic and genetic characterization of equine influenza strains causing local outbreaks reported in Morocco, respectively, in 1997 and 2004. The antigenic and genetic characterizations of the equine influenza virus H3N8 are reported here. The highest similarity between the HA1 nucleotide sequences of A/equine/Nador/1/1997 and those of A/equine/Rome/5/1991 and A/equine/Italy/1199/1992 demonstrate that A/equine/Nador/1/1997 belongs to the European lineage. On the other hand, A/equine/Essaouira/2/2004 and A/equine/Essaouira/3/2004 were classified in the predivergent lineage. The present work emphasizes the importance of a national influenza survey program, which requires a collaborative laboratory network to promote the collection and characterization (antigenic and genetic) of equine influenza viruses in real time.     

Experimental infection of alpine goats with a Moroccan strain of peste des petits ruminants virus (PPRV)

Peste des petits ruminants virus (PPRV) recently caused a serious outbreak of disease in Moroccan sheep and goats. Alpine goats were highly susceptible to PPRV with mortality rates approaching 100%, as opposed to local breeds of sheep which were less susceptible to the disease. The relative susceptibility of alpine goats was investigated through an experimental infection study with the Moroccan strain of PPRV. Severe clinical signs were observed in the alpine goats with virus being excreted through ocular, nasal and oral routes. No difference in the severity of the disease in goats was observed with different inoculation routes and transmission of the virus by direct contact was confirmed. This study confirmed the susceptibility of the alpine goat to PPRV infection and describes a challenge protocol that effectively and consistently reproduced severe clinical signs of PPR in experimentally infected goats.     

Evidence for 2,4‐D mineralisation in Mediterranean soils: impact of moisture content and temperature

BACKGROUND: The 2,4‐D degradation ability of the microbiota of three arable Mediterranean soils was estimated. The impact of soil moisture and temperature on 2,4‐D degradation was investigated. RESULTS: The microbiota of the three soils regularly exposed to 2,4‐D were able rapidly to mineralise this herbicide. The half‐life of 2,4‐D ranged from 8 to 30 days, and maximum mineralisation of ¹⁴C‐2,4‐D ranged from 57 to 71%. Extractable ¹⁴C‐2,4‐D and ¹⁴C‐bound residues accounted for less than 1 and 15% respectively of the ¹⁴C‐2,4‐D initially added. The highest amounts of ¹⁴C‐2,4‐D bound residues were recorded in the soil with the lowest 2,4‐D‐mineralising ability. Although all three soils were able to mineralise 2,4‐D, multivariate analysis revealed that performance of this degrading microbial activity was dependent on clay content and magnesium oxide. Soil temperature affected the global structure of soil microbial community, but it had only a moderate effect on 2,4‐D‐mineralising ability. 2,4‐D‐mineralising ability was positively correlated with soil moisture content. Negligible 2,4‐D mineralisation occurred in all three soils when incubated at 10 or 15% soil moisture content, i.e. within the range naturally occurring under the Mediterranean climate of Algeria. CONCLUSION: This study shows that, although soil microbiota can adapt to rapid mineralisation of 2,4‐D, this microbial activity is strongly dependent on climatic parameters. It suggests that only limited pesticide biodegradation occurs under Mediterranean climate, and that arable Mediterranean soils are therefore fragile and likely to accumulate pesticide residues. Copyright © 2009 Society of Chemical Industry     

Differences in growth and yield in response to cadmium toxicity in cotton genotypes

A greenhouse hydroponic experiment was conducted to study the effects of cadmium (Cd; 0, 0.1, 1.0, 10 μM in nutrient solution) on yield and yield components as well as Cd concentration and accumulation in three cotton genotypes (Simian 3, Zhongmian 16, Zhongmian 16–2). The results showed that Cd concentration in different organs increased with increasing Cd levels in the nutrient solution in the following order: root > petiole > xylem > fruiting branch, leaf > phloem in vegetative organs and seed coat, seed nut > boll shell > fiber in reproductive organs. There were significant genotypic differences in functional leaf and petiole Cd concentrations at 1 and 10 μM Cd treatments, with the cultivar Simian 3 showing higher Cd concentrations and greater reductions in lint yield than the other two genotypes.     

Dieckol and Its Derivatives as Potential Inhibitors of SARS-CoV-2 Spike Protein (UK Strain: VUI 202012/01): A Computational Study

The high risk of morbidity and mortality associated with SARS-CoV-2 has accelerated the development of many potential vaccines. However, these vaccines are designed against SARS-CoV-2 isolated in Wuhan, China, and thereby may not be effective against other SARS-CoV-2 variants such as the United Kingdom variant (VUI-202012/01). The UK SARS-CoV-2 variant possesses D614G mutation in the Spike protein, which impart it a high rate of infection. Therefore, newer strategies are warranted to design novel vaccines and drug candidates specifically designed against the mutated forms of SARS-CoV-2. One such strategy is to target ACE2 (angiotensin-converting enzyme2)–Spike protein RBD (receptor binding domain) interaction. Here, we generated a homology model of Spike protein RBD of SARS-CoV-2 UK strain and screened a marine seaweed database employing different computational approaches. On the basis of high-throughput virtual screening, standard precision, and extra precision molecular docking, we identified BE011 (Dieckol) as the most potent compounds against RBD. However, Dieckol did not display drug-like properties, and thus different derivatives of it were generated in silico and evaluated for binding potential and drug-like properties. One Dieckol derivative (DK07) displayed good binding affinity for RBD along with acceptable physicochemical, pharmacokinetic, drug-likeness, and ADMET properties. Analysis of the RBD–DK07 interaction suggested the formation of hydrogen bonds, electrostatic interactions, and hydrophobic interactions with key residues mediating the ACE2–RBD interaction. Molecular dynamics simulation confirmed the stability of the RBD–DK07 complex. Free energy calculations suggested the primary role of electrostatic and Van der Waals’ interaction in stabilizing the RBD–DK07 complex. Thus, DK07 may be developed as a potential inhibitor of the RBD–ACE2 interaction. However, these results warrant further validation by in vitro and in vivo studies.     

Traditional techniques for increasing the discharge from qanats in Algeria

This paper discusses the evolution of the foggara in time and the methods adopted by farmers to increase the water parts of owners. Field works were conducted in 2007, 2008, 2009 and 2010 in the oases of Timimoun and Adrar. Over 100 foggaras were visited. Surveys and interviews with the populations and the owners were conducted. Two ancestral methods are used by the farmers to increase the discharge of the foggara. This is an extension of part of the drainage gallery and the addition of one or more branch in the main gallery. Over time, the foggara to a single gallery evolves towards a foggara to several galleries in the form a ramified network of galleries.     

Combined use of millet glume-derived compost and mineral fertilizer enhances soil microbial biomass and pearl millet yields in a low-input millet cropping system in Niger

A two-year field experiment was conducted in Niger to explore the effects of integrated use of millet glume-derived compost (MGD-Compost) and NP fertilizer on soil microbial biomass carbon (C_mic), nitrogen (N_mic) and millet yields. Three compost rates (3000 kg ha^?1, 1500 kg ha^?1 and 0 kg ha^?1) and three NP fertilizer rates (100%, 50% and 0% of recommended NP fertilizer) were arranged in a factorial experiment organized in a randomized complete block design with three replications. Combined application of compost and NP fertilizer induced a synergistic effect on C_mic and N_mic. Compost application increased millet grain yield from 59% to 91% compared to control. Combined application of compost and NP fertilizer increased millet grain yields from 57% to 70% in 2013 and from 36% to 82% in 2014 compared to sole application of mineral fertilizer. Agronomic efficiency (AE) of nitrogen values increased by 3.7 and 2.3 times than those of sole NP fertilizer application in 2013 and 2014, respectively. Phosphorus AE was 1.6 times higher than that of the sole application of NP fertilizer. These findings indicate that integrated application of MGD-Compost and NP fertilizer enhances soil microbial biomass content and increases millet grain yield in a low-input cropping system.