Influence of age and purpose for testing on the cut-off selection of serological methods in bovine neosporosis

The aim of this study was to investigate the need for different cut-off points, according to animal age and the purpose of testing, for two of the most widely used serological techniques in bovine neosporosis, IFAT and a crude antigen ELISA (Civtest, HIPRA). Therefore, the population reference sera used were defined using a combination of multiple criteria such as epidemiological/clinical and histopathological parameters and an immunoblot test. Firstly, foetuses and breeding cattle (heifers and cows) were considered as separate subpopulations for serological evaluation. Secondly, cut-off points for each serological technique (IFAT and ELISA) according to age group (foetuses and breeding cattle) and the different practical applications (detection of infection and abortion) were calculated following the receiver operating characteristics (ROC) analysis. Cut-off points were defined, for IFAT and ELISA for aborted breeding cattle and for IFAT alone in the case of the foetuses, assuming an equivalent cost of false positive and negative results. In infected breeding cattle, for IFAT and ELISA and in foetuses for ELISA, two possible cut-off values were obtained, one for a maximum sensitivity and one for a maximum specificity and the intervals of unclear results were defined. In this case, a cut-off value for equal sensitivity and specificity was also estimated. When cut-off points for infected breeding cattle, 1:100-1:250 for IFAT and 0.306-0.451 for ELISA were applied to a target population, optimal and similar negative and positive predictive values together with similar apparent and true prevalence results were observed suggesting the possibility of using both tests interchangeably.     

Subtilase cytotoxin encoding genes are present in human, sheep and deer intimin-negative, Shiga toxin-producing Escherichia coli O128:H2

Shiga toxin-producing Escherichia coli (STEC) O128:H2 is recognised worldwide to be an important non-O157 STEC associated with human illness and in particular with causing haemolytic uraemic syndrome. This serotype is commonly isolated from sheep and is being increasingly isolated from deer. We determined the virulence profile and genetic relationships of one human, six sheep and five deer intimin-negative STEC O128:H2 strains isolated in Spain over a 7-year period. Our goals were to establish the presence of other virulence-associated factors, such as SubAB, in intimin-negative STEC O128:H2 strains involved in human disease and in that case, to determine if sheep and/or deer represent a reservoir of SubAB-positive STEC O128:H2. All the strains lacked the eae gene and carried subtilase cytotoxin (SubAB) encoding genes (subAB) and tia genes, but not saa gene, suggesting the presence of the recently identified new variant of SubAB, encoded on a putative pathogenicity island together with tia. We report for the first time the presence of subtilase cytotoxin encoding genes in intimin-negative STEC O128:H2 strains pathogenic for humans and how this finding might explain their clinical relevance despite neither carrying eae nor stx subtypes associated with severe clinical outcomes, but only stx1c and stx2b. Multilocus sequence typing analysis revealed that STEC O128:H2 strains from sheep and deer belong to the clonal lineage of STEC O128:H2 strains involved in diarrhoeal and haemorrhagic diseases in humans. Our results indicate that sheep and deer represent a reservoir of SubAB-positive STEC O128:H2 strains and thus a potential source of human infection.     

Interannual differences in growth and hatch‐date distributions of early juvenile European anchovy in the Bay of Biscay: implications for recruitment

In order to understand better the recruitment variability in European anchovy in the Bay of Biscay, it is important to investigate the processes that affect survival during the early life stages. Anchovy juvenile growth trajectories and hatch‐date distributions were inferred over a 3‐year period based on otolith microstructure analysis. Otolith growth trajectories showed a characteristic shape depending on their hatch‐date timing. Earlier‐born juveniles had notably broader maximum increments than later born conspecifics, resulting in higher growth rates. This observation suggests that early hatching would be beneficial for larval and juvenile growth, and, therefore, survival. The estimated juvenile hatch‐date distributions were relatively narrow compared with the extended anchovy spawning season (March–August) in the Bay of Biscay and indicated that only individuals originated mainly from the summer months (June–August) survived until autumn. Hatch‐date distributions were markedly different among years and seemed to influence the interannual recruitment strength of anchovy. We conclude that years characterized by juvenile survivors originating from the peak spawning period (May and June) would lead to considerable recruitment success. Downwelling events during the peak spawning period seem to affect larval survival. Furthermore, size‐dependent overwinter mortality would be an additional process that regulates recruitment strength in the anchovy population in the Bay of Biscay.     

Mercury content in volcanic soils across Europe and its relationship with soil properties

Purpose  

Volcanoes are a natural source of Hg, whose deposition can occur in neighbouring soils. This study examines the role of soil compounds in the geochemical behaviour of total Hg (Hg _T ) in volcanic soils. An estimation of Hg from lithological origin is also assessed to ascertain the relevance of other sources in Hg _T accumulated in volcanic soils.     

Simultaneous analysis of the intestinal parasites and diet through eDNA metabarcoding

Agricultural expansion and intensification are having a huge impact on plant and arthropod diversity and abundance, affecting food availability for farmland birds. Difficult food access, in turn, can lead to immunosuppression and a higher incidence of parasites. In the studies designed to examine changes in the diet of birds and their parasites, metabarcoding is proving particularly useful. This technique requires mini-barcodes capable of amplifying the DNA of target organisms from fecal environmental DNA. To help to understand the impact of agricultural expansion on biodiversity, this study sought to design and identify mini-barcodes that might simultaneously assess diet and intestinal parasites from the feces of farmland birds. The capacity to identify diet and parasites of 2 existing and 3 newly developed mini-barcodes was tested “in silico” in relation to the behavior of a reference eukaryotic barcode. Among the newly designed mini-barcodes, MiniB18S_81 showed the higher taxonomic coverage of eukaryotic taxa and a greater amplification and identification capacity for diet and parasite taxa. Moreover, when it was tested on fecal samples from 5 different steppe bird species, MiniB18S_81 showed high taxonomic resolution of the most relevant diet and parasite phyla, Arthropoda, Nematoda, Platyhelminthes, and Apicomplexa at the order level. Thus, the mini-barcode developed emerges as an excellent tool to simultaneously provide detailed information regarding the diet and parasites of birds, essential for conservation and management.     

Integrating stakeholders’ demands and scientific knowledge on ecosystem services in landscape planning

The conflict between conservation and timber production is shifting in regions such as Biscay (Basque Country, northern Spain) where planted forests are no longer profitable without public subsidies and environmentalist claim that public subsidies should be reoriented to the regeneration of natural forest. This paper develops an approach that integrates scientific knowledge and stakeholders’ demands to provide decision-making guidelines for the development of new landscape planning strategies while considering ecosystem services. First, a participatory process was conducted to develop a community vision for the region’s sustainable future considering the opportunities and constrains provided by the landscape and its ecosystems. In the participatory process forest management was considered an important driver for the region`s landscape development and forest multi-functionality was envisioned as a feasible attractive alternative. The participatory process identified a knowledge gap on the synergies and trade-offs between biodiversity and carbon storage and how these depend on different forest types. Second, to study the existing synergies and trade-offs between biodiversity and carbon storage and disentangle the identified knowledge gap, a GIS-based research was conducted based on spatially explicit indicators. Our spatial analysis results showed that natural forests’ contribution to biodiversity and carbon storage is higher than that of the plantations with exotic species in the region. The results from the spatial analysis converged with those from the participatory process in the suitability of promoting, where possible and appropriate, natural forest ecosystems restoration. This iterative learning and decision making process is already showing its effectiveness for decision making, with concrete examples of how the results obtained with the applied approach are being included in planning and decision-making processes.     

Dietary probiotic supplementation (Shewanella putrefaciens Pdp11) modulates gut microbiota and promotes growth and condition in Senegalese sole larviculture

Probiotic supplementation in fish aquaculture has significantly increased in the last decade due to its beneficial effect on fish performance. Probiotic use at early stages of fish development may contribute to better face metamorphosis and weaning stress. In the present work, we studied the influence of Shewanella putrefaciens Pdp11 supplementation on growth, body composition and gut microbiota in Senegalese sole (Solea senegalensis) during larval and weaning development. S. putrefaciens Pdp11 was incorporated using Artemia as live vector (2.5 × 10⁷ cfu mL^?1) and supplied to sole specimens in a co-feeding regime (10–86 DAH) by triplicate. Probiotic addition promoted early metamorphosis and a significantly higher growth in length at 24 DAH larvae. S. putrefaciens Pdp11 also modulated gut microbiota and significantly increased protein content and DHA/EPA ratios in sole fry (90 DAH). This nutritional enhancement is considered especially important after weaning, where significantly higher growth in length and weight was observed in probiotic fish. Moreover, a less heterogeneous fish size in length was detected since metamorphosis till the end of weaning, being of interest for sole aquaculture production. After weaning, fish showed significantly higher growth (length and weight) and less variable lengths in fish when supplemented with probiotics. Both the enhancement of nutritional condition and the decrease in size variability associated with probiotic addition are highly interesting for sole aquaculture production.     

Influence of nitrogen supply on micropropagation and subsequent microtuberization of four potato cullwars

A medium containing low amounts of nitrogen (19–23 meq.l^?1) produced optimum results in micropropagation as revealed by the number of nodes, internode length, chlorophyll content, and leaf area of four potato cvs. belonging each to four different maturity groups. Decreasing amounts of nitrogen also increased chlorophyll content in all four cultivars tested. The NH ₄ ⁺ concentration did not have an effect on micropropagation for low nitrogen supplies. In all cvs., except Baraka, there was a “carry over” effect of the nitrogen content in the micropropagation medium onto subsequent tuberization, the lower nitrogen (23 meq.l^?1) advancing tuber initiation. Microtuberization of cv. Jaerla was earlier in darkness than under short days regardless of the propagation medium used.     

Trends in nutrient reservoirs stored in uppermost soil horizons of subantarctic forests differing in their structure

Macro- (C, N, P, K, Ca and Mg) and micronutrient (Fe, Mn, Cu and Zn) reservoirs were estimated in the O (Oi+Oe+Oa) and in the A (0–10 cm depth) soil horizons of four stands of Nothofagus pumilio (lenga) from Tierra del Fuego which differ in their forestry characteristics. The type of soil layer (O and A) and the forest structure, as related to above-ground biomass storage, were assessed as a factor of variation in the nutrient reservoirs of both soils layers. Nutrient reservoirs showed similar ranges in both soil layers for total organic C (34–65 Mg ha^?1), total N (1.5–3.5 Mg ha^?1), rapidly available Ca (1.3–2.7 Mg ha^?1) and Mg (0.18–0.36 Mg ha^?1). Rapidly available K, available P, and medium-term available Fe and Cu were accumulated preferentially in A the horizons, whereas medium-term available Mn and Zn were mainly stored in the O horizons. The forest structure was not a statistically significant factor of variation on the nutrient reservoirs in the O horizons, although a legacy effect of the accumulated above-ground biomass on nutrient reservoirs in this soil layer can not be discarded. On the contrary, the pools of total organic C, total N, rapidly available K and medium-term available Cu and Zn in the A horizons varied significantly with the different forest structure. In terms of lenga forests sustainability, uppermost soils layers should be preserved as they accumulate most of the soil fertility which is essential for lenga regeneration after logging. The inclusion of the assessment of soil fertility in the management plans of the lenga forests in the ecotone of the Argentinean Tierra del Fuego is strongly recommended, as it will contribute to ensure a successful regeneration of lenga in logged areas.