Genome-wide in silico analysis of SOD genes in common bean (Phaseolus vulgaris L.)

Journal of Crop Science and Biotechnology - Superoxide dismutases (SODs) are a group of enzymes that play essential roles in catalyzing the dismutation of superoxide radicals to protect cells from...     

Landscape pattern changes over 25 years across a hotspot zone in southern Brazil

Forest fragmentation caused by human activities has many implications for natural landscapes, such as habitat reduction and the loss of biodiversity. This study investigated the temporal fragmentation process of forest remnants in a strongly agro-industrialised region in southern Brazil over 25 years. The studied watershed area hosts two important typologies of the Atlantic Forest biome as well as Quaternary remnants of the Brazilian Savanna biome, which are considered hotspots of biodiversity and reflect the intense process of forest fragmentation caused by Brazilian urban and agro-industrial development. Thus, studies encompassing multitemporal scales are paramount to understanding changes in forest patterns and are fundamental for trend predictions of landscape dynamics. To perform the calculation of the mean normalised difference vegetation index, Landsat satellite images from 1991 to 2016 were processed using SPRING® software. Subsequently, FRAGSTATS® software was used to calculate landscape metrics. A reduction in the number of forest fragments since 1991 was observed, with a maximum amount of 5 243 fragments in 1993 that declined to 4 015 fragments in 2016. Although the number of fragments in the watershed decreased, the mean area increased by 72.9% and the mean of the shape index increased from 1.3 in 1991 to 1.5 in 2016. In addition, there was a 64.7% increase in the edge density and a reduction of 35.6 m in the isolation between the nearest neighbours. The degree of isolation of the fragments underwent a process of expansion and reduction when compared to 1991, presenting results that support the hypothesis that the Atlantic Forest is in a process of stabilisation and forest restoration.     

Trypanocidal Action of (?)-Elatol Involves an Oxidative Stress Triggered by Mitochondria Dysfunction

Natural compounds have shown good potential for the discovery of new chemotherapeutics for the treatment of Chagas’ disease. Recently, our group reported the effective trypanocidal activity of (−)-elatol, extracted from the red macroalgae Laurencia dendroidea present in the Brazilian coast against Trypanosoma cruzi. However, the mechanism of action of this compound has remained unclear. There are only hypotheses concerning its action on mitochondrial function. Here, we further investigated the mechanisms of action of (−)-elatol on trypomastigotes of T. cruzi. For this, we evaluated some biochemical alterations in trypomastigotes treated with (−)-elatol. Our results show that (−)-elatol induced depolarization of the mitochondrial membrane, an increase in the formation of mitochondrial superoxide anion and loss of cell membrane and DNA integrity. Additionally, (−)-elatol induced formation of autophagic vacuoles and a decrease in cell volume. All together, these results suggest that the trypanocidal action of (−)-elatol involves multiple events and mitochondria might be the initial target organelle. Our hypothesis is that the mitochondrial dysfunction leads to an increase of ROS production through the electron transport chain, which affects cell membrane and DNA integrity leading to different types of parasite death.     

Dummy regression analysis for modelling the nutritionally tailored fillet fatty acid composition of turbot and sole using gilthead sea bream as a reference subgroup category

Farmed turbot and sole were sampled at different stages of the production cycle for analysis of fillet lipid content and fatty acid (FA) composition. The entire data set along with our own published data on gilthead sea bream were fitted to dummy regression equations with turbot and sole as dummy variables, gilthead sea bream as a reference subgroup category, and diet FA composition and fillet lipid content as independent variables. The relative contribution of each independent variable to the total variance was found to vary within and among FAs and fish species, but strong correlation coefficients (0.76 <  r² > 0.99) were found for almost all of the FA equations, including saturated FAs, monoenes and long‐chain polyunsaturated fatty acids (PUFA) of n‐3 and n‐6 series. Given the differences in lipogenic activities of the fish species, major interaction effects between fillet lipid content and dummy variables were found for monoenes and saturated FAs. The proposed equations (hosted at www.nutrigroup-iats.org/aquafat ) were able to fit different proportions of EPA, DPA and DHA underlying the fish species differences in FA desaturation/elongation pathways. The robustness of the model was proven with extra data from the three fish species, allowing a close linear association near to equality for the scatter plot of observed and predicted values.     

Autonomic Innervation of the Equine Urinary Bladder

The distribution and density of intrinsic autonomic nerve fibers and cells were studied in the equine urinary bladder by means of the peroxidase-antiperoxidase immunohistochemical method to localize tyrosine-hydroxylase (TH), and by means of a histochemical technique to detect acetylcholinesterase (AChE) activity. The results suggest that the equine urinary bladder, like that of other mammalian species, possesses a rich autonomic innervation which includes catecholaminergic and acetylcholinesterase positive nerves. At least a part of these nerve fibers have an intrinsic origin from ganglion cell bodies within the bladder wall.     

Utilization of enzyme mixtures to retard bread crumb firming

The influence of enzyme mixtures containing amylase and lipase activities on straight dough bread staling was studied. Amylopectin retrogradation, crumb firming, amylose-lipid complexes, and dextrin production were analyzed in bread samples supplemented with two enzyme mixtures. The addition of enzyme mixtures to bread formula causes a beneficial effect on bread keeping properties and the formation of a more thermostable amylose-lipid complex than the one found in control bread. Amylopectin retrogradation was inhibited by the use of the enzyme; the effect was accompanied by reduced crumb-firming rates. The enzymatically generated water-soluble dextrins (maltose and DP3, DP4, DP5, and DP6 dextrins) are the most effective in preserving crumb softness during bread storage.     

Convergence of developmental mutants into a single tomato model system: 'Micro-Tom' as an effective toolkit for plant development research

Background

The tomato (Solanum lycopersicum L.) plant is both an economically important food crop and an ideal dicot model to investigate various physiological phenomena not possible in Arabidopsis thaliana. Due to the great diversity of tomato cultivars used by the research community, it is often difficult to reliably compare phenotypes. The lack of tomato developmental mutants in a single genetic background prevents the stacking of mutations to facilitate analysis of double and multiple mutants, often required for elucidating developmental pathways.

Results

We took advantage of the small size and rapid life cycle of the tomato cultivar Micro-Tom (MT) to create near-isogenic lines (NILs) by introgressing a suite of hormonal and photomorphogenetic mutations (altered sensitivity or endogenous levels of auxin, ethylene, abscisic acid, gibberellin, brassinosteroid, and light response) into this genetic background. To demonstrate the usefulness of this collection, we compared developmental traits between the produced NILs. All expected mutant phenotypes were expressed in the NILs. We also created NILs harboring the wild type alleles for dwarf, self-pruning and uniform fruit, which are mutations characteristic of MT. This amplified both the applications of the mutant collection presented here and of MT as a genetic model system.

Conclusions

The community resource presented here is a useful toolkit for plant research, particularly for future studies in plant development, which will require the simultaneous observation of the effect of various hormones, signaling pathways and crosstalk.     

Influence of Grain Processing on Acid–Base Balance in Feedlot Steers

Grain processing (e.g. grinding, steaming, pelleting, flaking) has been reported to modify the incidence of ruminal disturbances in feedlot cattle. This study investigated the effects of two grain processing methods widely used in Spanish feedlots (grinding and pelleting) on animal performance, blood acid–base balance, blood electrolyte levels and serum lactate in a 140-day feedlot experiment with double-muscled Belgian Blue steers. The main aim of the study was to evaluate the way in which these two feeds modify blood acid–base balance, which is closely associated with ruminal pH. In light of our results we conclude that the animals that received the pelleted feed showed a more stable acid–base balance over time than those fed a ground feed. Nevertheless, higher levels of L-lactate and lower base excess (BE) and HCO₃ ⁻ values for cattle fed pelleted grain reflect a greater risk of grain-acid overload.     

Effects of long-term dietary supplementation of monensin or saccharomyces cerevisiae on blood acid-base and productive performance in growing feedlot steers

The aim of this study was to evaluate the effects of two dietary supplements (monensin and a live yeast culture) on acid-base balance in steers maintained in a commercial feedlot system, considering effects over the growing period (14 to 23 weeks of age). A 63-day feedlot study was performed using 42 double-muscled Belgian Blue steers. Steers were allotted randomly to one of the three study groups: (1) control group [no supplementation, C], (2) monensin supplementation [MON] at a concentration of 30 mg/kg (DM basis), and (3) live Saccharomyces cerevisiae strain supplementation [SACC] at a dose of 500 mg/kg (DM basis).Venous blood samples were collected for the measurement of acid-base parameters and L-lactate. Production parameters were also used as a complementary tool for understanding the internal changes associated with supplementation. Our results show that during the study period no statistical differences were observed between supplemented and control steers, although non-supplemented animals tended to gain more efficiently than those fed monensin or yeast. Nevertheless, taking into account blood parameters, these control animals showed a greater risk of acid overload due to a more marked decline in blood buffer levels over time in comparison with supplemented steers although no differences were observed between monensin or yeast supplemented animals. Additionally, significant effect of supplementation was observed in packed cell volume (PCV) values.