Ecoviability for ecosystem‐based fisheries management

Reconciling food security, economic development and biodiversity conservation is a key challenge, especially in the face of the demographic transition characterizing many countries in the world. Fisheries and marine ecosystems constitute a difficult application of this bio‐economic challenge. Many experts and scientists advocate an ecosystem approach to manage marine socio‐ecosystems for their sustainability and resilience. However, the ways by which to operationalize ecosystem‐based fisheries management (EBFM) remain poorly specified. We propose a specific methodological framework—viability modelling—to do so. We show how viability modelling can be applied using four contrasted case‐studies: two small‐scale fisheries in South America and Pacific and two larger‐scale fisheries in Europe and Australia. The four fisheries are analysed using the same modelling framework, structured around a set of common methods, indicators and scenarios. The calibrated models are dynamic, multispecies and multifleet and account for various sources of uncertainty. A multicriteria evaluation is used to assess the scenarios’ outcomes over a long time horizon with different constraints based on ecological, social and economic reference points. Results show to what extent the bio‐economic and ecosystem risks associated with the adoption of status quo strategies are relatively high and challenge the implementation of EBFM. In contrast, strategies called ecoviability or co‐viability strategies, that aim at satisfying the viability constraints, reduce significantly these ecological and economic risks and promote EBFM. The gains associated with those ecoviability strategies, however, decrease with the intensity of regulations imposed on these fisheries.     

Selecting the hologenome to breed for an improved feed efficiency in pigs—A novel selection index

Most traits in animal breeding, including feed efficiency traits in pigs, are affected by many genes with small effect and have a moderately high heritability between 0.1 and 0.5, which enables efficient selection. Since the microbiota composition in the gastrointestinal tract is also partly heritable and was shown to have a substantial effect on feed efficiency, the host genes affect the phenotype not only directly by altering metabolic pathways, but also indirectly by changing the microbiota composition. The effect of the microbiota composition on the breeding value of an animal is the conditional expectation of its breeding value, given the vector with microbiota frequencies, that is The breeding value of an animal can therefore be decomposed into a heritable contribution that arises from an altered microbiota composition and a heritable contribution that arises from altered metabolic pathways within the animal, so Instead of selecting for breeding value , an index comprising the two components and with appropriate weights, that is , can be used. The present study shows how this breeding strategy can be applied in pig genomic selection breeding scheme for two feed efficiency traits and daily gain.     

Detection of full and limited amphidromous migratory dynamics of fish in Caribbean rivers

All native fishes living in the Caribbean island rivers are considered diadromous but few species have been validated as diadromous. In Guadeloupe (Lesser Antilles) as well as in the other tropical islands, the riverine habitats are subject to strong anthropogenic pressure due to resource modifications or dams. The management of fish biodiversity requires knowledge concerning their life history traits and behaviour that are still unknown for most species at a local scale and at the whole distribution area of the species. In a Guadeloupe river, we inferred the migratory patterns of four freshwater fishes common to Caribbean rivers by the analysis of otolith microchemistry. We found two species Eleotris perniger (Eleotridae) and Sicydium plumieri (Gobiidae) to be completely amphidromous with a marine larval phase and a freshwater adult phase. Agonostomus monticola (Mugilidae) was also found to be amphidromous in this system. The fourth species Gobiesox cephalus (Gobiesocidae) showed elemental ratios suggesting an estuarine larval phase and was defined as “limited amphidromous”. The identification of such life history traits, with limited dispersion abilities, argues for specific management measures in tropical island rivers at a basin scale for the conservation of biodiversity.     

Influence of nursery soil amendments on water relations,root architectural development,and field performance of Douglas-fir transplants

This experiment evaluated the influence of manure, peat, and vermiculite incorporated at low and high rates (0.0118 and 0.0236 m³/m²) and under two soil moisture regimes on Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) seedling (1+0 for 1+1) xylem water potential (_xylem), whole-plant growth, root architectural development, and subsequent field performance under fertilized and non-fertilized conditions. Trends in soil moisture retention were observed (high manure > high peat > control) but there were no differences in _xylem. Root length in the wetter soil moisture experiment was initially (three months) greatest for seedlings in high vermiculite and least in high manure but there were no differences among treatments at lifting (eight months). Mean height was greatest for seedlings grown in vermiculite and peat (wetter nursery experiment) after two field seasons. Field fertilization (35 g/seedling) with controlled-release fertilizer in the planting hole stimulated height growth initially, but decreased height and diameter growth during the second growing season. Dramatic improvements associated with the use of nursery soil amendments were not realized, but the failure to identify negative effects, a potential reduction in disease incidence, and improvement of nursery soil physical and chemical properties may justify their use.     

Trunk inoculations of Phytophthora cinnamomi in red oaks

Trunks of northern red oaks were inoculated with Phytophthora cinnamomi. To study lesion growth in bark tissues over several years, lesion assessment methods were perfected and tested. Koch's postulates were demonstrated. Development and longevity of lesions were studied. Intra-specific variability of red oak susceptibility was investigated.     

Seasonal effect on infection and development of lesions caused by Cryphonectria parasitica in Castanea sativa

Seasonal variation in the development of chestnut blight, caused by Cryphonectria parasitica, was investigated by inoculating in situ chestnut trees and in vitro excised chestnut segments, at either monthly or 3‐monthly intervals throughout 30 months. Inoculations were made with conidia and mycelium of a virulent isolate and with mycelium of a hypovirulent isolate. Conidial inoculations of living sprouts or excised segments between May and July resulted in the greatest incidence of infection whereas inoculations in autumn and winter, in vitro as well as in situ, did not reveal any visible disease. However, from these symptomless inoculated stems, C. parasitica was isolated 3 months after inoculation. Inoculations with the mycelium of the virulent isolate always resulted in lesions, except in January 1999, and the greatest rate of lesion development occurred for inoculations made in the spring and summer. There was a significant seasonal effect on lesion development. Lesions caused by the hypovirulent isolate, smaller than those caused by the virulent isolate, followed a similar seasonal pattern. The same seasonal variations were observed for inoculations in vitro of excised segments. Relative water content (RWC) of chestnut bark significantly varied with bark sampling date. The rate of lesion development in sprouts significantly correlated with average minimum (ATn) and maximum (ATx) temperatures and the sum of rainfall during inoculation period, with the rate of lesion development measured in excised segments 10 days after inoculation (R10d) and with RWC measured on the day of inoculation. In multiple regression models, variables ATx and R10d best explained variation in lesion development.     

The Warrumbungle Post‐Fire Recovery Project—raising the profile of soils

The impacts of a wildfire and subsequent rainfall event in 2013 in the Warrumbungle National Park in New South Wales, Australia were examined in a project designed to provide information on post‐fire recovery expectations and options to land managers. A coherent suite of sub‐projects was implemented, including soil mapping, and studies on soil organic carbon (SOC) and nitrogen (N), erosion rates, groundcover recovery and stream responses. It was found that the loss of SOC and N increased with fire severity, with the greatest losses from severely burnt sandstone ridges. Approximately 2.4 million t of SOC and ~74,000 t of N were lost from soil to a depth of 10 cm across the 56,290 ha affected. Soil loss from slopes during the subsequent rainfall event was modelled up to 25 t ha^?1, compared to a long‐term mean annual soil loss of 1.06 t ha^?1 year^?1. Groundcover averages generally increased after the fire until spring 2015, by which time rates of soil loss returned to near pre‐fire levels. Streams were filled with sand to bank full levels after the fire and rainfall. Rainfall events in 2015–2016 shifted creek systems into a major erosive phase, with incision through the post‐fire sandy bedload deposits, an erosive phase likely related to loss of topsoils over much of the catchment. The effectiveness of the research was secured by a close engagement with park managers in issue identification and a communications programme. Management outcomes flowing from the research included installation of erosion control works, redesign of access and monitoring of key mass movement hazard areas.