Gene constitution of South-East Asian native chickens, commercial chickens and jungle fowl using polymorphisms of four calpain genes

The gene constitution of polymorphisms of the four calpain genes (µ‐calpain, m‐calpain, p94, and µ/m‐calpain) were analyzed in South‐East Asian native chickens, White Leghorn and Broiler commercial chickens, and Red and Green jungle fowl. Polymorphisms were detected at all loci in chickens and Red jungle fowl, but only for CAPN1 (µ‐calpain gene) in Green jungle fowl. CAPN2 and CAPN1.5 are linked on chicken chromosome 3, and the genotype for these loci were treated as haplotype. Some combinations of calpain loci were tested using principal component analysis, and the best combination (CAPN1, CAPN3, and CAPN1.5) was determined. The proportion of polymorphic loci (P_poly) and heterozygosity (H?) were 1.00 and 0.316–0.465 in domestic chickens and red jungle fowl, and 0.33 and 0.137 in Green jungle fowl, respectively. G_ST values suggested that the degree of subdivision among native chickens was relatively low except for Thailand, which was highest. Pair‐wise F_ST testing, dendrogram and principal component analysis from the results of calpain loci showed that the four South‐East Asian native and commercial chicken populations were close genetically.     

Spatially distributed morphological characteristics of macropores in forest soils of Hitachi Ohta Experimental Watershed, Japan

Morphological characteristics of macropores in forest soil profiles were investigated at Hitachi Ohta Experimental Watershed in Japan. Nine individual profiles at different locations (various spatial scales in a catchment) and twenty profiles at one site (a small spatial scale) were excavated to the bedrock to investigate density, origin, diameter, direction, and gradient of macropores. Macropore densities in a soil profile ranged from 3.5 to 29.1 per m and from 5.4 to 75.1 per m², respectively. Subsurface erosion, root channels, and interactions between subsurface erosion and root channels accounted for 36.9, 36.5, and 19.0%, of the described macropores. The mean macropore diameter in organic-rich soil layer (17–20 mm) was larger than in the B horizon (11–14 mm) at both spatial scales. The dominant gradients of all macropores in the organic-rich soil layer and B horizon were at negative oblique angles. Approximately 90% of the macropores in the organic-rich soil layer and approximately 80% of the macropores in the B horizon fell within the range between −50 and 50 degree planar direction. Subsurface flow and root systems are believed to play important roles in determining the morphological characteristics of macropores. These characteristics appear to have variable influences in different soil horizons rather than at different spatial scales. A part of this paper was presented at the 103th (1992) and 105th (1994) Annual Meetings of Japanese Forestry Society.     

Real-time PCR genotyping assay for feline erythrocyte pyruvate kinase deficiency and mutant allele frequency in purebred cats in Japan

Erythrocyte pyruvate kinase (PK) deficiency is an inherited glycolytic erythroenzymopathy caused by mutations of the PKLR gene. A causative mutation of the feline PKLR gene was originally identified in Abyssinian and Somali cats in the U.S.A. In the present study, a TaqMan probe-based real-time PCR genotyping assay was developed and evaluated for rapid genotyping and large-scale screening for this mutation. Furthermore, a genotyping survey was carried out in a population of four popular purebred cats in Japan to determine the current mutant allele frequency. The assay clearly displayed all genotypes of feline PK deficiency, indicating its suitability for large-scale survey as well as diagnosis. The survey demonstrated that the mutant allele frequency in Abyssinian and Somali cats was high enough to warrant measures to control and prevent the disease. The mutant allele frequency was relatively low in Bengal and American Shorthair cats; however, the testing should still be carried out to prevent the spread of the disease. In addition, PK deficiency should always be considered in the differential diagnosis of anemia in purebred cats in Japan as well as worldwide.     

Biochemistry and physiology of a family of eel natriuretic peptides

Three natriuretic peptides with similar structures were isolated from eels and their amino acid sequences determined; atrial natriuretic peptide (ANP) from atria, ventricular natriuretic peptide (VNP) from ventricles, and C-type natriuretic peptide (CNP) from brains. All three hormones were circulating in eel blood, and their plasma levels invariably decreased when eels were transferred from fresh water (FW) to seawater (SW). Eel ANP and VNP inhibited drinking in FW and SW eels. Eel ANP inhibited water and Na⁺ absorption by the intestine of SW eels. The potency of these ANP effects was 2–3 orders greater than those of other hormones which are known to have similar effects. Eel ANP and VNP induced antidiuresis but not antinatriuresis in FW eels. Eel ANP increased plasma cortisol level in SW eels but not in FW eels. The antidiuretic effect and the stimulation of cortisol secretion in eels are opposite to the ANP effects reported in mammals. These data suggest that ANP plays a complex role in the eel osmoregulation.

---

Résumé Trois peptides natriurétiques présentant des structures similaires ont été isolés chez l'anguille et leurs séquences en acides aminés a été déterminées; le peptide atrial natriurétique (ANP) dans l'atria, le peptide ventriculaire natriurétique (VNP) dans les ventricules et le peptide natriurétique de type C dans le cerveau. Ces trois hormones sont présents dans le sang d'anguille et leur niveau plasmatique decroit invariablement quand les anguilles sont transférées d'eau douce en eau de mer. L'ANP et le VNP d'anguille inhibent l'action de boire chez les anguilles d'eau douce et d'eau de mer. L'ANP d'anguille inhibe l'absorption d'eau et de Na⁺ par l'intestin d'anguille en eau de mer. Ces effets de l'ANP sont 2 à 3 fois plus grands que ceux observés avec d'autres hormones qui sont connues pour avoir des effets similaires. L'ANP et le VNP d'anguille induisent l'antidiurèse mais pas l'antinatriurèse chez les anguilles d'eau douce. L'ANP d'anguille augmente chez ce poisson les niveaux de cortisol plasmatique en eau de mer mais pas en eau douce. L'effet antidiurétique et la stimulation de la sécrétion de cortisol chez l'anguille sont contraire aux effets de l'ANP observés chez les mammifères. Ces résultats suggèrent que l'ANP joue un role complexe dans l'osmorégulation de l'anguille.

     

All-male Tilapia Hybrids of Two Strains of Oreochromis niloticus

Hybridization between Nile tilapia Oreochromis niloticus (Local and Stirling University strains) and blue tilapia O. aureus was found to be a tool to produce monosex populations. In order to select a purebred that produces all- or nearly all-male hybrids with high productivity, O. niloticus females and their diploid gynogenetics (meiogynes and mitogynes) were hybridized with O. aureus males. The sex ratio of progenies was evaluated from inter- and intraspecific crosses of two strains of Nile tilapia. Single-pair matings and group spawns under hatchery conditions showed no deviation ( P > 0.01) from the expected sex ratio of intraspecific crosses among two strains of Nile tilapia. However, a higher proportion of male progenies in blue tilapia was observed in group spawns in pond ( P < 0.004) and hatchery conditions ( P < 0.01). Only the Stirling strain and mitogynes produced all-male progenies under laboratory conditions. There were significant differences ( P < 0.05) in growth among hybrid progeny groups, when gynogens and their regular O. niloticus (Local strain) females were crossed with O. aureus males. Six-month hybrid offspring from mitogyne female parents grew better than those from regular and meiogyne female broods.     

Analysis of Land use and Land Cover Changes in the Coastal Area of Bangladesh using Landsat Imagery

Coastal land use across the globe has experienced remarkable rapid change over the recent decades because of extraordinary anthropogenic pressure and climate variability and change. Therefore, quantitative information about coastal land use change is imperative for effective management and planning resources for sustainable development. We analysed the quantitative land use and land cover changes during 1989–2000–2010 periods in three important agroecological zones of the most vulnerable coastal region of Bangladesh using Landsat images (Thematic Mapper/Enhanced Thematic Mapper Plus). In the Ganges Tidal Floodplain, the area under shrimp cultivation greatly increased at the rate of 2·05% per annum. The majority of the shrimp area gained from conversion of single cropland. In the Meghna Estuarine Floodplain, decreased mudflat and water bodies were observed, which was predominantly converted into cropland. In Chittagong Coastal Plain, salt pan–shrimp area increased with the expense of single and/or double cropland. In all the study areas, settlement area considerably increased over time. The dynamics of land use change have been attributed to low and unstable food production in the coastal region. The approach adopted in study and the results obtained from the study would likely be useful for policy making and identifying direction for future studies on the coastal land use in Bangladesh. Copyright © 2015 John Wiley & Sons, Ltd.     

Phyllochron Dynamics Under Controlled Environments in Rice (Oryza Sativa L.)

Previously, we reported that phyllochron of rice greatly fluctuated in the course of development under natural conditions. The present study was carried out to examine the phyllochron dynamics using the five near-isogenic lines (NILs) for heading time and the recurrent parent. The change of phyllochron was investigated under four different controlled conditions regarding daylength and temperature. Growth duration (days to heading) showed a large variation among different growth regimes as well as genotypes. Changes of phyllochron were evaluated in the genotypes by using a quartic polynomial regression that was well fitted to the change of phyllochron in the present controlled environments as previously observed under natural conditions. Phyllochron began to drastically increase after around the 5th phytomer order and decreased with the progress of reproductive development in similar manners under different environments. The pattern of phyllochron change varied from a flat to non-flat shape. The shape of the equation was affected by genotypes as well as daylengths and temperatures. In addition, the shape was closely related to the growth duration (days to heading) of the genotype, suggesting that the phyllochron might internally increase depending on the genotype controlling the heading date. Therefore, the present results showed that the sufficient examination of phyllochron dynamics is necessary for understanding a variation in the heading date of rice.