Genome-wide association study of grain iron and zinc concentration in common bean (Phaseolus vulgaris)

Common bean is one of the widely consumed food security crop in Africa, Asia and South America. It is a rich source of protein, minerals and micronutrients. High genotype by environment interaction is one of the main challenge in breeding for high grain micronutrient concentration. The objective of this study was to estimate SNP markers associated with grain Fe and Zn concentration using 289 common bean genotypes and 11,480 SNP markers. The study revealed that 43 quantitative trait loci (QTLs) were associated with grain Fe and Zn concentration. Five quantitative trait nucleotides (QTNs), that is, QTN Fe_1.1, QTN Fe_6.3, QTN Fe_6.5, QTN Fe_10.3 and QTN Fe_11.6 were detected both at Haramaya and Melkassa locations. Two of the markers, that is, QTN Fe_6.3 and QTN Fe_6.5, were located on chromosome 06 while QTN Fe_1.1, QTN Fe_10.3 and QTN Fe_ 11.6 were residing on chromosomes 01, 10 and 11, respectively. Among these, QTN Fe_11.6 had a large and positive consistent effect across locations. The five stable QTNs along with the potential candidate genes could be used for Fe biofortification through marker assisted selection.     

Geographical patterns of morphological variation in sorghum (Sorghum bicolor (L.) Moench) germplasm from Ethiopia and Eritrea: Quantitative characters

A total of 415 sorghum (Sorghum bicolor (L.) Moench) accessions representing different regions of Ethiopia, Eritrea and a group of introduced lines were evaluated for 15 quantitative characters to determine the extent and geographical pattern of morphological variation. The extent of variation was highly pronounced for agronomically important characters for sorghum. These characters included plant height, days for 50% flowering, peduncle exsertion, panicle length and width, number and length of primary branches per panicle and thousand seed weight. Significant regional variation was also observed for most of the characters. The results implied that environmental factors such as altitude, rainfall, temperature and growing period are important in regional variation. Mean for plant height and for days for 50% flowering showed clinal variation along the gradients of rainfall pattern and growing period in Ethiopia. Moreover, there were significant positive correlation coefficients between most of the characters. This included the correlation between agronomic characters of primary interest in sorghum breeding such as plant height and days for 50% flowering and also between various characters and the altitude of the collection sites. The implications of the results in plant breeding, germplasm collection and conservation as well as the probable sources of the wide range of variation are discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Rhizobial inoculation improves drought tolerance,biomass and grain yields of common bean (Phaseolus vulgaris L.) and soybean (Glycine max L.) at Halaba and Boricha in Southern Ethiopia

ABSTRACT

While pulses are staple food-legumes in Ethiopia, their productivity is low due to low soil fertility. Elite rhizobial strains that significantly increased shoot dry weight and nitrogen (N) contents of common beans and soybeans in greenhouse were selected for two-year field trials to evaluate their effect on yields of the pulses in the field. Each pulse had six treatments, namely four rhizobial inoculants, uninoculated control, and synthetic N fertilizer. In the drought-affected year 2015, inoculated pulses tolerated moisture stress better than non-inoculated controls. Inoculation was conducive to higher or equivalent yields compared to synthetic N fertilizer. At Halaba, bean inoculated with strain HAMBI3562 gave the highest grain yield (1500 ± 81 kg ha^?1; mean±SE) while the control yielded only 653 ± 22 kg ha^?1. At Boricha, HAMBI3570 gave a grain yield (640 ± 35 kg ha^?1) comparable to synthetic N. When rainfall was optimal in 2016, inoculation with HAMBI3562 and HAMBI3570 gave grain yields (around 4300 kg ha^?1) equivalent to synthetic N. With soybean, strain HAMBI3513 produced consistently higher or comparable biomass and grain yields compared to synthetic N. In conclusion, HAMBI3562 and HAMBI3570 for beans and HAMBI3513 for soybeans can serve as inoculants for areas having similar conditions as the test areas.     

Phosphorus use efficiency of improved faba bean (Vicia faba) varieties in low‐input agro‐ecosystems

The use of phosphorus (P)‐efficient legumes is a prerequisite for sustainable intensification of low‐input agro‐ecosystems. A study was undertaken in a farmer's field in the tropical highlands of Ethiopia to assess the agronomic performance, P acquisition efficiency (PAE), and P utilization efficiency (PUE) of six improved faba bean varieties (Vicia faba L. var. CS‐20DK, Degaga, Gebelcho, Moti, Obse, Walki) without and with P application. Varieties showed significant variations in PUE, but P application had no significant effect on PUE. Variety Moti demonstrated highest PUE of 272 kg grain kg^?1 P, which was 1.6‐fold higher than the lowest PUE (164 kg grain kg^?1 P) of Gebelcho. PUE was significantly and positively correlated with grain yield (r = 0.542) and negatively correlated with shoot PAE (r = –0.541), indicating that PUE is important for grain yield. The results demonstrate that variations in grain and biomass yield of faba beans were largely due to differences in PUE and not due to PAE. Therefore, we argue that genetic resources of faba bean varieties showing optimal agronomic performance and high PUE in low‐input agro‐ecosystems should be better explored. Introduction of such varieties in low‐input cereal‐based cropping systems could improve and enhance P use efficiency at the system level.     

Economic assessment of use values of near-natural forestry compared with rotational forestry in Denmark

The present study is a cost-benefit analysis of converting the current rotational forestry (RF) of Norway spruce stand into near-natural forestry (NNF) of beech, based on two representative soil conditions and visitors popular case areas in Denmark, considering welfare economic values of timber, recreation provision, and groundwater recharge. The study answers the major research question of how large the welfare economic values of recreation and groundwater benefits of the conversion are as compared with timber benefits. The net present values (NPV) of the benefits were calculated for an infinite time horizon at a 3 % discount rate. The results reveal that converting into NNF would result in a NPV of at least 6,832 € ha^?1 from use values of recreation and water benefit on a site with good soil and a high visitor frequency, as is typical in the eastern part of Denmark. On a site in the west of the country, with poor growth conditions and a lower visitor frequency, the gain is still substantial, namely 5,581 € ha^?1. These benefits though come at a cost of 3,375 and 6,206 € ha^?1 from timber production, respectively. This means that the economic value of use values of recreation and water benefits outweighs the loss of timber on good soil conditions but not on poor soil conditions.     

Farmers’ Views of Soil Erosion Problems and their Conservation Knowledge at Beressa Watershed, Central Highlands of Ethiopia

Farmers’ decisions to conserve natural resources generally and soil and water particularly are largely determined by their knowledge of the problems and perceived benefits of conservation. In Ethiopia, however, farmer perceptions of erosion problems and farmer conservation practices have received little analysis or use in conservation planning. This research examines farmers’ views of erosion problems and their conservation knowledge and practices in the Beressa watershed in the central highlands of Ethiopia. Data were obtained from a survey of 147 farm households managing 713 fields during the 2002/2003 cropping season. In-depth interviews and group discussions were also held with the farmers to obtain additional information. The results show that 72% of the farmers reported erosion problems, and they recognized that conservation was necessary. However, they considered erosion to be severe mostly when visible signs – rills and gullies – appeared on their fields. The majority of the farmers believe that erosion could be halted, and they use a range of practices for erosion control and fertility improvement. These include contour plowing (83%), drainage ditches (82%), and stone terraces/bunds (73%). Nevertheless, despite decades of conservation intervention in the area, it appears that most farmers have developed negative attitudes towards externally recommended measures. The research concludes that under the conditions present in the Ethiopian central highlands, soil and water conservation interventions should consider farmers’ conservation knowledge and practices to improve acceptance and adoption of the recommendations. Aklilu Amsalu is a lecturer in the Department of Geography and Environmental Studies of Addis Ababa University, Addis Ababa, Ethiopia. He is currently doing his PhD research on best land management practices in highland watershed management in Ethiopia in the Department of Environmental Sciences of Wageningen University, Wageningen, The Netherlands. Jan de Graaff is a senior lecturer and researcher in the Erosion and Soil and Water Conservation Group of Wageningen University, Wageningen, The Netherlands. His expertise is on impact assessment and economic evaluation of soil and water conservation.     

Genetic variation of Ethiopian and Eritrean sorghum (Sorghum bicolor (L.) Moench) germplasm assessed by random amplified polymorphic DNA (RAPD)

The extent and patterns of distribution of genetic variation among 80 sorghum (Sorghum bicolor (L.) Moench) germplasm accessions from Ethiopia and Eritrea were investigated using RAPD with 20 oligonucleotide primers. The primers generated a total of 147 polymorphic bands across the 80 accessions with a mean of 7.35 bands per primer. Estimation of the extent of variation by the Shannon-Weaver diversity index revealed an intermediate level of overall variation (H = 53), although the levels varied among regions of origin of the accessions. Partitioning of the total variation revealed considerable variation (77%) within the region of origin of the accessions and the remainder (23%) among regions of origin. Similarly, a large portion (94%) of the total variation was found within the adaptation zones compared to among the adaptation zones (6%). The results suggest a weak differentiation of the sorghum material both on regional and agro-ecological bases, which could be ascribed to the high rate of outcrossing in cultivated sorghum and its free natural hybridization with its wild and weedy relatives, as well as to seed movement by humans. The average genetic dissimilarity was found to be 36% among the 80 accessions and 13% among the 15 regions of origin. Cluster analysis failed to group accessions of the same region or the same adaptation zone, which further confirmed the weak differentiation of the material studied. The clustering pattern of the regions of origin was broadly concordant with previous clustering patterns obtained using morphological characters, in which regions with broad agro-climatic conditions were grouped together.     

Species-specific allometric equations for improving aboveground biomass estimates of dry deciduous woodland ecosystems

Allometric equations are important for quantifying biomass and carbon storage in terrestrial forest ecosystems.However,equations for dry deciduous woodland ecosystems,an important carbon sink in the lowland areas of Ethiopia have not as yet been developed.This study attempts to develop and evaluate species-specific allometric equations for predicting aboveground biomass(AGB)of dominant woody species based on data from destructive sampling for Combretum collinum,Combretum molle,Combretum harotomannianum,Terminalia laxiflora and mixed-species.Diameter at breast height ranged from 5 to 30 cm.Two empirical equations were developed using DBH(Eq.1)and height(Eq.2).Equation 2 gave better AGB estimations than Eq.1.The inclusion of both DBH and H were the best estimate biometric variables for AGB.Further,the equations were evaluated and compared with common generic allometric equations.The result showed that our allometric equations are appropriate for estimating AGB.The development and application of empirical species-specific allometric equations is crucial to improve biomass and carbon stock estimation for dry woodland ecosystems.     

Coffee‐husk biochar application increased AMF root colonization,P accumulation,N2 fixation,and yield of soybean grown in a tropical Nitisol,southwest Ethiopia

Low soil fertility and soil acidity are among the major bottlenecks that limit agricultural productivity in the humid tropics. Soil management systems that enhance soil fertility and biological cycling of nutrients are crucial to sustain soil productivity. This study was, therefore, conducted to determine the effects of coffee‐husk biochar (0, 2.7, 5.4, and 16.2 g biochar kg^?1 soil), rhizobium inoculation (with and without), and P fertilizer application (0 and 9 mg P kg^?1 soil) on arbuscular mycorrhyzal fungi (AMF) root colonization, yield, P accumulation, and N₂ fixation of soybean [Glycine max (L.) Merrill cv. Clark 63‐K] grown in a tropical Nitisol in Ethiopia. ANOVA showed that integrated application of biochar and P fertilizer significantly improved soil chemical properties, P accumulation, and seed yield. Compared to the seed yield of the control (without inoculation, P, and biochar), inoculation, together with 9 and 16.2 g biochar kg^?1 soil gave more than two‐fold increment of seed yield and the highest total P accumulation (4.5 g plant^?1). However, the highest AMF root colonization (80%) was obtained at 16.2 g biochar kg^?1 soil without P and declined with application of 9 mg P kg^?1 soil. The highest total N content (4.2 g plant^?1) and N₂ fixed (4.6 g plant^?1) were obtained with inoculation, 9 mg P kg^?1, and 16.2 g biochar kg^?1 soil. However, the highest %N derived from the atmosphere (%Ndfa) (> 98%) did not significantly change between 5.4 and 16.2 g kg^?1 soil biochar treatments at each level of inoculation and P addition. The improved soil chemical properties, seed yield, P accumulation and N₂ fixation through combined use of biochar and P fertilizer suggest the importance of integrated use of biochar with P fertilizer to ensure that soybean crops are adequately supplied with P for nodulation and N₂‐fixation in tropical acid soils for sustainable soybean production in the long term.     

Multivariate analysis of morphological variation in sorghum (Sorghum bicolor (L.) Moench) germplasm from Ethiopia and Eritrea

Multivariate methods, including principal component, cluster and discriminant analyses, were used to assess the patterns of morphological variation and to group 415 sorghum accessions for 15 quantitative characters. The first five principal components explained 79% of the total variation with plant height and days to 50% flowering being the most important characters in the first principal component. Cluster analysis grouped the accessions into ten clusters. A greater proportion of accessions of similar adaptation zones and accessions from regions of origin with similar agro-climatic conditions were grouped together. Moreover, discrimination of accessions was more pronounced when discriminant analysis was based on zone of adaptation rather than regions of origin. Based on the observed patterns of variation, it is concluded that the morphological variation in the material studied is structured by environmental factors. The implications of the results for plant breeding and germplasm conservation programmes arediscussed.