Genomewide association study reveals novel quantitative trait loci associated with resistance towards Septoria tritici blotch in North European winter wheat

Fungal diseases are a major constraint for wheat production. Effective disease resistance is essential for ensuring a high production quality and yield. One of the most severe fungal diseases of wheat is Septoria tritici blotch (STB), which influences wheat production across the world. In this study, genomewide association mapping was used to identify new chromosomal regions on the wheat genome conferring effective resistance towards STB. A winter wheat population of 164 North European varieties and breeding lines was genotyped with 15K single nucleotide polymorphism (SNP) wheat array. The varieties were evaluated for STB in field trials at three locations in Denmark and across 3 years. The association analysis revealed four quantitative trait loci, on chromosomes 1B, 2A, 5D and 7A, highly associated with STB resistance. By comparing varieties containing several quantitative trait loci (QTL) with varieties containing none of the found QTL, a significant difference was found in the mean disease score. This indicates that an effective resistance can be obtained by pyramiding several QTL.     

Responses to betaine and inorganic sulphur of sheep in growth performance and fibre growth

Sulphur‐containing amino acids (SAA) are essential and usually the first limiting amino acids for growth, milk and wool production. The keratin fibre that grows from epidermal tissue is rich in SAA. The rate of fibre growth and its S content are influenced by the availability of SAA. Betaine is a dietary source for a labile methyl group and actively participates in methionine metabolism by donating methyl groups for the remethylation of homocysteine to methionine. Ruminants are capable of synthesizing SAA from inorganic S sources, and most bacteria in the rumen can use inorganic S to meet their requirements for growth. The objective of this study was to examine whether betaine and an inorganic sulphur supplement could provide methyl groups and sulphur amino acids in a way that growth performance and wool production of ewes and lambs are improved. Treatments performed included betaine supplementation, sulphate supplementation and betaine plus sulphate supplementation with five replications for each treatment. The dry matter intake of the ewes was affected by betaine plus sulphate supplementation (p < 0.05). In the ewes, betaine plus sulphate supplementation increased (p < 0.05) the wool growth rate, wool yield, staple length and wool sulphur concentration, while decreasing wool wax and wool yellowness (p < 0.05). In the lambs, wool growth rate, wool yield, fibre diameter, staple length, staple strength, wool sulphur concentration, wool wax and fibre percentage did not differ (p > 0.05) between treatments. In the ewes, plasma methionine concentration increased (p < 0.05) with betaine plus sulphate treatment. No corresponding difference (p > 0.05) was observed in plasma methionine concentration in the lambs. It can be concluded that betaine plus sulphate supplementation has the potential to change wool characteristics in the ewes, while these compounds were without any effect on growth and wool production of the lambs. Combining the two supplements was advantageous.     

Rates of inbreeding and genetic diversity in Iranian Holstein Cattle

The accumulation of inbreeding and the loss of genetic diversity is a potential problem in Holstein dairy cattle. The goal of this study was to estimate inbreeding levels and other measures of genetic diversity, using pedigree information from Iranian Holstein cattle. Edited pedigree included 1 048 572 animals. The average number of discrete generation equivalents and pedigree completeness index reached 13.4 and 90%, respectively. The rate of inbreeding was 0.3% per year. Effective number of founders, founder genomes, non‐founders and ancestors of animals born between 2003 and 2011 were 503, 15.6, 16.1 and 25.7, respectively. It was proven that the unequal founder contributions as well as bottlenecks and genetic drift were important reasons for the loss of genetic diversity in the population. The top 10 ancestors with the highest marginal genetic contributions to animals born between 2003 and 2011 and with the highest contributions to inbreeding were 48.20% and 63.94%, respectively. Analyses revealed that the most important cause of genetic diversity loss was genetic drift accumulated over non‐founder generations, which occurred due to small effective population size. Therefore, it seems that managing selection and mating decisions are controlling future co‐ancestry and inbreeding, which would lead to better handling of the effective population size.     

Sowing date effects on dry matter remobilization and yield of triticale (Triticosecale wittmack) under late season drought stress

A 2-year field experiment using a randomized complete block design with the treatments arranged as split-split-plot with three replicates was conducted to investigate the effects of different sowing dates. Different irrigation regimes and different triticale cultivars were tested during 2014 and 2015 growing seasons. Under cutting off irrigation at the milk development stage, Sanabad with 46.2% had higher relative water content on December 3 sowing date. Assimilate remobilization in cutting off irrigation at dough development was more than that at milk development and Sanabad had the highest assimilate remobilization on 3 December sowing date in both years. In both years, Sanabad had the highest remobilization efficiency. The highest contribution of pre-anthesis assimilates to grain was obtained on 3 December sowing date in both years in Sanabad. Lower grain yield in Juanillo cultivar under cutting off irrigation, appeared to be due to reduction in remobilization efficiency, especially by cutting off irrigation at milk development stage in late sowing date. Overall, Sanabad was more tolerant to cutting off irrigation than Juanillo.     

Comparison of EDTA and ammonium Bicarbonate-DTPA for the extraction of phosphorus in calcareous soils from Kerman,Iran

Developing a fast and reliable soil testing method is critical for improving soil testing efficiency and ensuring reliable fertilizer recommendation. The objectives of this study were to evaluate sodium ethylene diamine tetra acetic acid (Na₂-EDTA) as a replacement for ammonium bicarbonate-diethylenetriaminepentaacetic acid (AB-DTPA) to extract phosphorus (P) to determinate the relationships between extractable P and its uptake by crop in calcareous soils. Na₂-EDTA and AB-DTPA was compared by the amounts of extracted P by analyzing soil samples collected from agricultural production areas. There were significant correlations between Na₂-EDTA and AB-DTPA for soil test P based on soils collected from the agricultural field. Soil test P by both extractants was significantly correlated with plant P concentration. Na₂-EDTA was identified as an alternate improved extraction method instead of AB-DTPA in calcareous soils based on this study. However, more work will be needed to identify the correlation of the two extractants and crop responses under a field condition.     

Land use change modeling through an integrated Multi-Layer Perceptron Neural Network and Markov Chain analysis(case study: Arasbaran region,Iran)

Temporal land use/land cover (LULC) change information provides a variety of applications for informed management of land resources. The aim of this study was to detect and predict LULC changes in the Arasbaran region using an integrated Multi-Layer Perceptron Neural Network and Markov Chain analysis. At the first step, multi-temporal Landsat images (1990, 2002 and 2014) were processed using ancillary data and were classified into seven LULC categories of high density forest, low-density forest, agriculture, grassland, barren land, water and urban area. Next, LULC changes were detected for three time profiles, 1990–2002, 2002–2014 and 1990–2014. A 2014 LULC map of the study area was further simulated (for model performance evaluation) applying 1990 and 2002 map layers. In addition, a collection of spatial variables was also used for modeling LULC change processes as driving forces. The actual and simulated 2014 LULC change maps were cross-tabulated and compared to ensure model simulation success and the results indicated an overall accuracy and kappa coefficient of 97.79% and 0.992, respectively. Having the model properly validated, LULC change was predicted up to the year 2025. The results demonstrated that 992 and 1592 ha of high and lowdensity forests were degraded during 1990–2014,respectively, while 422 ha were added to the extent of residential areas with a growth rate of 17.58 ha per year. The developed model predicted a considerable degradation trend for the forest categories through 2025, accounting for 489 and 531 ha of loss for high and low-density forests, respectively. By way of contrast, residential area and farmland categories will increase up to 211 and 427 ha, respectively. The integrated prediction model and customary area data can be used for practical management efforts by simulating vegetation dynamics and future LULC change trajectories.     

Wide hybridization and introgression breeding in safflower: Effectiveness of different selection methods

Possibility of using interspecific hybridization to increase genetic diversity of drought tolerance in safflower (Carthamus tinctorius L.) and effectiveness of different selection methods is poorly understood. The main objectives of this study were to evaluate the effectiveness of (a) interspecific hybridization to expand genetic diversity in safflower for agronomic traits and drought tolerance in advance generations and (b) different selection methods (direct vs. indirect) for improving seed yield. Interspecific hybridizations were performed between species of C. tinctorius × C. palaestinus (TP), C. palaestinus × C. oxyacantha (PO) and C. tinctorius × C. oxyacantha (TO). Based on the field screening of genotypes in F3 generation, four groups of selected genotypes (derived from combination of direct and indirect selection under both drought and normal environments along with selection based on drought tolerance index (STI)) were evaluated in F4 and F5 generations. Indirect selection for seed yield was significantly more efficient than direct selection. Selection in stress environment resulted to more efficiency than selection in normal environment. No significant difference was observed between direct selection and selection based on STI. The result showed that TP was the best population to combine high seed yield and drought tolerance in safflower.     

Response of industrial hemp to Salsola kali subsp. tragus densities under organic and conventional fertilisation

A 2-year field study was conducted to determine the effects of different nutrition systems and Salsola kali subsp. tragus densities on industrial hemp yield and its components. Experiments were conducted as a split plot in a randomised complete block design with three replicates. Factors were fertilisation (poultry manure, vermicompost and nitrogen fertiliser) as the main plot and weed density (0, 5, 10, 15 and 20 plants/m²) as the subplot. Results indicated that the maximum number of racemes per plant, seeds per raceme, 1000-seed weight, biomass, grain yield and harvest index (HI) of industrial hemp were obtained using vermicompost and were reduced with nitrogen fertiliser application. All measured properties in hemp plants decreased due to increasing S. kali subsp. tragus density, especially at 15 and 20 plants/m². The most significant reduction in hemp grain yield and its components was observed by increasing weed density with the application of nitrogen fertiliser. The application of vermicompost at high weed densities resulted in greater hemp grain yield and its components compared with nitrogen fertiliser. It is recommended to apply organic fertilisers, especially vermicompost at high S. kali subsp. tragus densities.