菜心重要农艺性状与SSR分子标记的关联分析

菜心是华南地区的主要蔬菜,利用分子标记辅助育种发掘出与重要农艺性状相关的分子,不仅可以加速优良品种的选育进程,还可以定向地优化目标性状,培育出高产优质的菜心品种。本研究选用148份来自宁夏银川和广东南沙田间种植的菜心种质材料,采集株高、株质量、薹高、薹质量和薹粗5个重要农艺性状的数据;利用SSR标记对其进行基因分型,开展农艺性状及SSR标记的关联性分析。结果表明,在供试的菜心材料中,147个SSR标记共检测到252个变异位点,引物多态信息含量(PIC)为0.0526~0.5222,平均值为0.3793;群体结构分析将供试的菜心品种分为2个类群;银川和南沙两地菜心品种在农艺性状和SSR标记的关联分析中发现,有6个位点与相同性状存在仍显著关联(P<0.01)。这些标记能为菜心的分子辅助选择育种提供参考。     

SnToxA,SnTox1, and SnTox3 originated in Parastagonospora nodorum in the Fertile Crescent

The centre of origin of the globally distributed wheat pathogen Parastagonospora nodorum has remained uncertain because only a small number of isolates from the Fertile Crescent were included in earlier population genetic and phylogeographic studies. We isolated and genetically analysed 193 P. nodorum strains from three naturally infected wheat fields distributed across Iran using 11 neutral microsatellite loci. Compared to previous studies that included populations from North America, Europe, Africa, Australia, and China, the populations from Iran had the highest genetic diversity globally and also exhibited greater population structure over smaller spatial scales, patterns typically associated with the centre of origin of a species. Genes encoding the necrotrophic effectors SnToxA, SnTox1, and SnTox3 were found at a high frequency in the Iranian population. By sequencing 96 randomly chosen Iranian strains, we detected new alleles for all three effector genes. Analysis of allele diversity showed that all three effector genes had higher diversity in Iran than in any population included in previous studies, with Iran acting as a hub for the effector diversity that was found in other global populations. Taken together, these findings support the hypothesis that P. nodorum originated either within or nearby the Fertile Crescent with a genome that already encoded all three necrotrophic effectors during its emergence as a pathogen on wheat. Our findings also suggest that P. nodorum was the original source of the ToxA genes discovered in the wheat pathogens Phaeosphaeria avenaria f. sp. tritici 1, Pyrenophora tritici-repentis, and Bipolaris sorokiniana.     

Molecular identification of blast resistance genes in rice landraces from northeastern India

Rice blast disease caused by the fungus Magnaporthe oryzae is one of the most devastating diseases causing huge losses worldwide. In the present study, major blast resistance genes were investigated in landraces originating from northeastern India. Based on phenotypic evaluation, 288 landraces were classified into three distinct groups: resistant (75), moderately resistant (127) and susceptible (86). The genetic frequencies of the 18 major blast resistance genes were between 6.2% and 27.4%, with only two genotypes possessing a maximum of nine blast resistance genes. The cluster and population structure analysis grouped the landraces into two groups. Through principal coordinate analysis, the scatter plots partitioned the resistant and moderately resistant landraces into different groups. Analysis of molecular variance showed maximum (96%) diversity within populations and least (4%) diversity between populations. Association analysis identified six markers, CRG4_2, RM72, tk59-2, pi21_79-3, RM1233 and RM6648, that are significantly associated with blast disease and explained a phenotypic variance of 1.1–6.5%. The associated genes could be used in marker-assisted rice breeding programmes for gene pyramiding to develop rice varietal resistance against blast disease. The present study represents a valuable blast resistance genetic resource that could be used for identification of new R genes, donors for blast resistance, and genomic studies.     

Temporal disease dynamics and relative importance of sexual and asexual reproduction of grape downy mildew (Plasmopara viticola) in an isolated vineyard in the North Georgia Mountains,USA

The North Georgia Mountains are the southernmost region along the United States East Coast where European wine grapes (Vitis vinifera) are grown commercially. Epidemics of downy mildew, caused by Plasmopara viticola, are frequent and severe, but little is known about the epidemiology and population biology of the pathogen in this region. Disease monitoring in an experimental vineyard from 2015 to 2017 indicated that times of disease onset and progress rates were highly variable across years and cultivars. Oospores were observed microscopically, and simulation with a process-based model indicated presence of conditions favourable for oospore germination in the spring and early summer each year. A total of 409 P. viticola isolates collected over three  years were genotyped with seven microsatellite markers, revealing very high genotypic diversity, which when combined with the observation of oospores is indicative of a sexually reproducing population. Among the 409 isolates, 225 multilocus genotypes (MLGs) were identified, of which 164 were detected only once and 61 were repeated (clonal). Eight MLGs (represented by 28 isolates) were detected across years, suggesting the possibility of asexual overwintering of P. viticola in this region. Across sampling dates, the percentage of isolates belonging to nonrepeated (unique) MLGs ranged from 27.3% to 63.2%. Even towards the end of the annual epidemic, the percentage of isolates in nonrepeated MLGs was still relatively high, around 30%. These MLGs may have originated from oospores germinating late during the growing season, although incomplete sampling at earlier dates and contribution by immigration cannot be fully excluded.     

基于GM(1,1)的天然次生林空间结构预测

【目的】系统地分析已有天然次生林林分空间结构数据,通过灰色模型预测天然次生林林分空间结构各指标未来的发展趋势,对天然林经营具有十分重要的意义。【方法】以湖南大围山自然保护区典型次生林为研究对象,依据结构化森林经营理论,选取了混交度、竞争指数、角尺度、空间密度指数、开阔比数、大小比数、林分综合均质性指数作为天然次生林林分空间结构合理性评价与预测的量化指标,构建了基于GM(1,1)的天然次生林林分空间结构灰色预测模型。模型将2008年林分空间结构各指标的平均值作为初始值,并在研究区设置了面积为20 m×20 m的5个研究样地(M1,M2,M3,M4,M5),利用保护区2008-2018年典型样地林分空间信息,预测了研究区调研样地2019年-2021年林分空间结构各指标未来的变化趋势。【结果】利用精度检验机制对该模型的精确度进行了有效性检验,检验结果表明,所有指标预测合格概率P合=71.43%,良好的概率P良好=22.86%,优的概率P优=5.71%,表明该预测模型符合精度检验要求。【结论】样地未来3 a各指标整体变化尺度不大,林分空间结构基本稳定。从各指标在2008-2018年时空上的变化规律来看,各样地林分平均竞争指数、平均大小比数及平均空间密度指数是影响林分均质性指数的关键指标。     

自然生草桃园表层土壤水分和草地地上生物量的空间分布及其关系

【目的】阐明桃树果园短期自然生草条件下土壤水分空间分布特征及其与草地地上生物量的关系。【方法】以信阳沙壤土五月鲜桃园为研究对象,在冬春季短期自然生草条件下,采用1 m×1 m网格采样法,以经典统计学和地统计学半方差函数为工具,研究表层(0~5 cm)土壤水分和草地地上生物量空间分布特征。【结果】表层(0~5 cm)土壤含水量和地上草地生物量符合正态分布,平均体积含水量为10.08%,95%置信区间为9.84%~10.32%,变异系数为16.36%,0.2 m×0.2 m草地地上生物量均值为9.17 g,变异系数为56.71%。区域田块尺度上,自然生草桃园草地地上生物量和表层(0~5 cm)土壤水分空间分布均符合指数函数模型,模型块金值/基台值分别为0.477 3和0.499 8,变程分别为7.20和2.51。即二者均具有中等程度的空间依赖性,草地地上生物量较表层(0~5 cm)土壤含水量具有更强的空间依赖性。克里格插值结果表明,表层(0~5 cm)土壤含水量和草地地上生物量空间上呈斑块状分布,且表现为距离树体越远值越大的分布特征。相关分析结果表明,地上生物量与表层(0~5 cm)土壤含水量之间极显著正相关(P<0.001)。【结论】果园短期自然生草有利于保蓄表层土壤水分,改善土壤水分条件,草地地上生物量是影响果园表层土壤水分空间分布的重要因素。     

Threats to at-risk salmonids of the Canadian Rocky Mountain region

Trout and charr, members of the salmonid family, have high conservation value but are also susceptible to anthropogenic threats in part due to the specificity of their habitat requirements. Understanding historical and future threats facing these species is necessary to promote their recovery. Of freshwater trout and charr in the Canadian Rocky Mountain region, westslope cutthroat trout (Oncorhynchus clarkii lewisi), bull trout (Salvelinus confluentus; a charr species) and Athabasca rainbow trout (Oncorhynchus mykiss) are of conservation concern. And indeed, range contractions and declining populations are evident throughout much of their ranges. Range contraction was most evident in the southern Alberta designatable unit (DU) of westslope cutthroat trout. Diminished populations were also evident in the downstream watersheds of the Alberta bull trout range, and throughout the Athabasca rainbow trout range. We assessed historical and future threats to evaluate the relative importance of individual threats to each DU and compare their impact among species. Individual threats fall into the broad categories of angling, non-native species and genes, habitat loss and alteration, and climate change. Severity of each threat varies by DU and reflects the interaction between species’ biology and the location of the DU. Severity of threats facing each DU has changed over time, reflecting extirpation of native populations, changes in management and industry best practices, expansion of non-native species and progressing climate change. The overall threat impact for each DU indicates a high probability of substantial and continuing declines and calls for immediate action.     

大别山山核桃果实与叶片性状的表型多样性研究

[目的]探讨大别山山核桃天然种群的表型多样性,为种质资源收集、优选、改良提供理论支持,为大别山山核桃的开发利用奠定基础。[方法]从19个大别山山核桃天然种群中选取198个单株,测定其果实和叶片的表型性状共16个,采用巢式方差分析,单因素方差分析,相关性分析,非加权配对算数平均法(UPGMA)等方法揭示大别山山核桃表型性状与地理分布的关系及其变异规律。[结果](1)大别山山核桃的16个表型性状在种群间和种群内均存在极显著差异(P<0.01),表明大别山山核桃的表型多样性非常丰富;(2)各表型性状的变异范围为1.64%-26.59%,平均变异系数为9.63%;果实表型与叶片表型的种群内平均变异系数分别为6.16%和15.42%,果实表型平均变异系数较小,性状相对稳定;(3)表型性状间的相关性分析表明,性状间达极显著相关的有60对,达显著相关的11对;(4)种群间和种群内的平均方差分量百分比分别为49.28%和17.53%,平均表型分化系数为66.25%,表明大别山山核桃表型变异主要来自种群间;(5)当距离系数为0.04时,19个种群被分为4类,聚类情况基本与经度的变化一致。     

Population dynamics of the potato cyst nematode,Globodera pallida,in relation to temperature,potato cultivar and nematicide application

The impact of increasing temperatures on the population dynamics of the soil-dwelling nematode Globodera pallida, a persistent and economically important pest of potatoes, was investigated. The reproductive factor (final population⁄initial population) and length of life cycle were found to be temperature sensitive. Pot experiments performed over 4 months allowed comparison of the effect on development of G. pallida of two temperature regimes: an average temperature comparable to current field conditions (14.3 °C) and an average temperature above current field conditions (17.3 °C). A larger second generation of juveniles was observed at 17.3 °C compared to 14.3 °C. Multiplication of G. pallida at field sites in Shropshire and East Lothian (average soil temperatures of 15.5 and 14.1 °C, respectively, during potato cropping) was also examined. A quantitative PCR assay and visual examination of roots were used to monitor the dynamics of the G. pallida populations in both field sites at 4-weekly intervals. Four cultivars, Desirée, Cara, Maris Piper and Estima, were grown with and without nematicide treatments. Nematicide treatments suppressed population increases at both sites. Females were observed on the roots of cvs Cara and Desirée at the end of the growing season in Shropshire, but not at East Lothian, and are likely to represent a second generation.