Rapid sedimentological and biological assessment of hydrocarbon contaminated sediments

It is possible to rapidly detect the presence of high concentrations of sediment associated hydrocarbons using a sediment profile camera and simultaneously evaluate the general sedimentological and biological character of a contaminated area. In sediments that were heavily contaminated with hydrocarbons from spills and chronic long-term additions the presence of hydrocarbons was seen about 50% of the time in the sediment profile images as unique features, ‘H spots’. The presence of these features was related to the concentration of hydrocarbons in the sediment. In highly contaminated muddy sediments ‘H spots’ were found in images collected at stations that had from 270 to 610 ppt total hydrocarbons. Sedimentological and biological information obtained from the sediment profile images confirmed the impacted nature of Elizabeth River sediments. Sediment profile imaging provide a means of obtaining an overall evaluation of the quality of a habitat and impacts on that habitat from pollution related environmental disturbances. While qualitative, an advantage of sediment profile image data is that they can be evaluated in less than a day and used to quickly locate inclusions of hydrocarbons in the sediments for further quantitative chemical or biological sampling, or mapping of heavily contaminated areas.     

Wild-reared aplomado falcons survive and recruit at higher rates than hacked falcons in a common environment

The northern aplomado falcon (Falco femoralis septentrionalis) has been the subject of a large-scale reintroduction effort conducted by The Peregrine Fund since 1993. Intensive monitoring during 2002-2004 revealed approximately 38 breeding pairs and numerous non-territorial individuals in two study areas centered on Matagorda Island National Wildlife Refuge (NWR) and Laguna Atascosa NWR. Continued releases (“hacking”) of captive-bred young after pair establishment and successful wild breeding provided an opportunity to compare survival and recruitment histories of wild-reared and hacked falcons hatched during 2001-2003. We used Program MARK to rank multi-state models of apparent survival and recruitment rates with Akaike’s Information Criterion scores, corrected for small samples. The top model candidate, with almost 3.5 times more support than the next best model, detected differences due to falcon origin (wild or captivity): although breeder survival was independent of origin, juvenile hacked falcons survived and recruited at lower rates than wild-reared falcons. Given the high density of territorial adult falcons in the study areas, the difference in apparent survival may reflect greater dispersal by hacked falcons, increased tolerance of wild falcons in territory margins due to prior socialization, or other factors effecting higher intrinsic fitness of wild falcons. However, natal dispersal did not differ between the two groups, strengthening the hypothesis of a difference in true survival. Disproportionately greater recruitment of wild falcons into the breeding population again suggests their higher intrinsic fitness. These findings show how close monitoring of population vital rates can efficiently guide adaptive management of recovering populations.     

Archaeal communities in the sediments of different mangrove stands at Dongzhaigang,China

Purpose

Knowledge of archaeal communities is essential for understanding of the mechanism of carbon and nitrogen cycle in the mangrove sediment ecosystem. Presently, little is known about archaeal communities in the Dongzhaigang mangrove sediments. This study aimed to characterize the archaeal communities in sediments of different mangrove stands and to find out the correlations between archaeal communities and the environmental factors of sediments.

Materials and methods

Sediment samples were collected from the Dongzhaigang mangrove forest for analysis of soil properties and archaeal communities, by national standard methods and Illumina Miseq archaeal 16S ribosomal RNA (rRNA) gene sequencing, respectively.

Results and discussion

The archaeal community in the Dongzhaigang mangrove forest was constituted by some phyla from “TACK” and “DPANN” supergroups, and dominated by Euryarchaeota. Among sediments of the four mangroves in Dongzhaigang, principal coordinates analysis (PCoA) scatter plot showed a trend of difference in the archaeal community structure in the Bruguiera gymnoihiza and Kandelia candel stands from that in the Laguncularia racemosa and Sonneratia apetala stands. The abundance of the order Methanosarcinales was the highest in the sediments of K. candel mangroves, whereas the order of Methanobacteriales dominated in B. gymnoihiza sediments. The highest richness and diversity values of Archaea occurred in K. candel sediments, while the lowest in B. gymnoihiza. Pearson correlation showed the significant relationships between sediment properties and some dominant genera, with a positive and significant correlation between sediment properties and genus Methanobacterium, coinciding with the maximum values of sediment properties and abundance of Methanobacterium in the sediment of B. gymnoihiza. Such results indicated that the difference of archaeal community structure among mangrove sediments may be caused by the different sediment characteristics. Methanogenic communities in the Dongzhaigang mangrove forest sediments were, at the order level, constituted by Methanobacteriales, Methanomicrobiales, Methanosarcinales, and Methanomassiliicoccales.

Conclusions

The investigation indicated that the Dongzhaigang mangrove sediment ecosystems support diverse archaeal communities and methanogenic communities, and that there was a general trend of difference in the archaeal community structure in the B. gymnoihiza and K. candel mangrove sediments from that in the L. racemosa and S. apetala sediments. Such difference may be caused by the difference in sediment characteristics.

     

Marking springtails (Folsomia candida) with rubidium

Marking springtails is a basic tool to evaluate their fundamental ecological phenomena. Rb marking is based on the fact that enriched rubidium in an organism can be tracked trough the experiment. Our goal was to improve the rubidium-marking technique in Folsomia candida (Willem) for both microcosm and field experiments. We investigated four methodological problems of this technique, in particular, we determined the required Rb concentration in the diet to reach marking level, measured the period when labeling could be detected under two different feeding conditions, and we estimated the effects of Rb on springtails' growth. Because marked and unmarked animals are always mixed in the course of recapture we also measured the levels of contamination between labeled springtails and those in the control groups. For introducing rubidium, we fed animals with Rb-treated Baker's yeast. Rubidium-chloride labeling persisted in springtails for 27 days during which the Rb-levels in marked animals remained distinguishable from those in unmarked ones. Rb-elimination rate depended highly on the feeding conditions, with Rb-elimination being faster when food was in excess. The fitted exponential model to Rb-elimination suggested that Rb-labeling may be used for 46 and 103 days for experiments with and without food respectively. We found no effect on Collembola growth at low Rb-levels (1.2 μg Rb/g dry yeast) but at higher concentration growth was reduced. We found that contamination occurred when springtails were stored together in glycerin, however the unmarked sample with the highest Rb content was still just 4.8% of the lowest marked sample. These results provide a basis for mark-release-recapture and other studies using Rb marking on springtails.     

Biochar improves sediment microbial fuel cell performance in low conductivity freshwater sediment

Purpose

The low conductivity of sediments for mass and electron transport is the most severe limiting factor in sediment microbial fuel cells (SMFCs), so that sediment ameliorations yielded more remarkable effects than electrode improvements. The objective of this research was to enhance the electricity generation of SMFCs with amendments of biochar to freshwater sediments for conductivity enhancement.

Materials and methods

Laboratory-scale SMFCs were constructed and biochars were produced from coconut shells at different temperatures. Variations in the power output, electrode potential, internal resistance, total organic carbon (TOC) content, and microbial communities were measured.

Results and discussion

Amending with biochar reduced the charge transfer resistances of SMFCs and enriched the Firmicutes (mainly Fusibacter sp.) in the sediment, which improved the SMFC power generation by two- to tenfold and enhanced the TOC removal rate by 1.7- to fourfold relative to those without the amendment.

Conclusions

The results suggested that biochar amendment is a promising strategy to enhance SMFC power production, and the electrical conductivity of biochar should be considered important when interpreting the impact biochar has on the electrical performance of soil or freshwater sediment MFCs.

     

One-sided tests of bioequivalencewith nonnormal distributions and unequal variances

A test for bioequivalence on a variable of interest is sometimes used to determine whether a site that may have been adversely affected by its past use is sufficiently similar to a control site for the two to be considered the same for all practical purposes. For example, such a test might be used to compare the mean percentage cover of vegetation in an area previously used for mining and subsequently reclaimed, with the mean of the same variable at a neighboring area that has never been mined. A reason for adopting this approach rather than a standard test of significance is that it reverses the burden of proof. A significant result for a bioequivalence test gives evidence for two sites being similar, while a nonsignificant result leads to the conclusion that there is not enough evidence to consider the sites to be similar. This article discusses how to carry out one-sided tests for bioequivalence when the data are from nonnormal distributions, with variances that may be unequal. Examples that are used to illustrate the proposed methods involve the measurement of arsenic levels at an old ammunition testing site, and the vegetation cover at a reclaimed mining site.     

Recovery of cover-crop-N in the soil-plant system in the Guinea savannah zone of Ghana

In order to understand the efficiency of residue-N use and to estimate the minimum input required to obtain a reasonable level of crop response, it is important to quantify the fate of the applied organic-N. The recovery of N from ¹⁵N-labelled Crotalaria juncea was followed in the soil and the succeeding maize crop. Apparent N recovery (ANR) by maize from unlabelled Crotalaria juncea, Crotalaria retusa, Calopogonium mucunoides, Mucuna pruriens and mineral fertilizer at three locations were also evaluated. The maize crop recovered 4.7% and 7.3% of the ¹⁵N-labelled C. juncea-N at 42 days after sowing (DAS) and at final harvest, respectively. The corresponding ¹⁵N recovery from the soil was 92.4% and 58.5%. The highest mean ANR of 57.4% was with mineral fertilizer, whereas the mean ANR of 14.3% from C. retusa was the lowest. A large pool substitution and added-N interaction effect was observed when comparing N recovery from the labelled and unlabelled C. juncea. The amount of residue-N accounted for by the isotope dilution method at 42 DAS was 97.1% and at final harvest 65.8%. The large residue-N recovery in the soil organic-N pool explains the residual effect usually observed with organic residue application.     

Methods for the investigation of metabolic activities and shifts in the microbial community in a soil treated with a fungicide

Samples from a sandy agricultural soil were treated with increasing amounts of a fungicide (Sportak). The effects on the soil microflora were investigated over several weeks by monitoring basal and substrate-induced respiration and basal and substrate-induced heat output. The microbial biomass, metabolic quotient (qCO₂), relative heat output (rqheat), lag phase of substrate use, and calorimetric: respirometric ratio were used as ecophysiological parametèrs. As structural and community-specific parameters, we recorded tryptophan contents and auxin metabolism, and calculated the ratios of fungal to bacterial respiration by antibiotic inhibition of substrate-induced respiration. Sportak either inhibited or stimulated the microbiota, depending on the length of exposure to the fungicide and the amount applied. Mineralization of dead biomass was reflected in increased soil tryptophan contents after the Sportak application. A shortened lag phase demonstrated inhibition and a prolonged lag phase stimulation of substrate use. This changed with the experimental phase. The rqheat and the calorimetric: respirometric ratio proved to be suitable parameters for the detection of stress metabolism (repair processes) in soil microbiota, because thermodynamic processes and catabolic and anabolic metabolism are taken into account at the same time. Following the application of Sportak, indole 3-acetic acid biosynthesis decreased while indole-3-ethanol biosynthesis increased, probably as a result of a transitional community shift from K-strategists towards r-strategists. It was not the fungicide but the formulation (mainly xylol) that damaged the organisms. A shift in the ratio of fungi to bacteria was also observed, suggesting that the bacteria were probably more sensitive to xylol than the fungi.     

Korea’s importance in the East Asiatic gene center

New evidence from archeology and human genetics provides strong support for the introduction of rice agriculture to Japan by Korean farmers. This sheds new light on the formation and further evolution of the East Asiatic gene center and stresses the importance of Korean agri- and horticulturists in Eastern Asia.     

Effects of N sources and methane concentrations on methane uptake potential of a typical coniferous forest and its adjacent orchard soil

After removal of the above-ground plant debris three different soil layers were taken from a typical coniferous forest and its adjacent orchard in Numata City, Japan. The potentials of soil CH₄ uptake at two initial CH₄ concentrations were studied under aerobic conditions in the laboratory, along with inhibition of soil CH₄ oxidation by urea-N or KNO₃-N addition. Due to long-term N inputs, the CH₄ uptake of the upper mineral layer of the orchard soil was 25.4% and 87.7% lower than that of the surface forest soil at 2.4 and 12.6 l l^–1 CH₄, respectively. Methane uptake of the forest soil decreased with increasing soil depths at two CH₄ levels. However, maximal CH₄-consuming activity occurred in the 9- to 23-cm depth of the orchard soil at 12.6 l l^–1 methane. Nitrogen additions in the form of KNO₃ or urea at the rate of 200 g N g^–1 soil substantially reduced soil CH₄ uptake in the upper and sub-surface mineral layers at both sites, except that the addition of KNO₃-N had no apparent inhibitory effect on the CH₄ uptake in the 9- to 23-cm depth of the orchard soil. A strong inhibitory effect of NO₃^– addition on the CH₄ uptake, in contrast to NH₄⁺, occurred in the surface forest soil. The use of KNO₃-N, as compared to urea or urea plus a nitrification inhibitor (dicyandiamide), resulted in a lower potential to cause inhibition of CH₄ oxidation in the 0- to 23-cm depth of the orchard soil.