Soil quality index for cacao cropping systems

The soil quality index (SQI) for cacao cropping systems was developed to meet the nutritional criteria of the crop, the environmental safety of the cropping sites and the increasing demand for the production and quality of cocoa. Available water function (AWF), root growth function (RGF), mineral nutrition of plants function (MNF) and environmental safety function (ESF) for potentially toxic elements were included in the additive model of SQI for cacao cropping systems. In this study, over 66% of the cacao fields cropping sites were classified as regular SQI with a range of scores between 0.42 and 0.61. The field cropping site with the highest score (0.73) characterized as typic Alitic Red-Yellow Argisol was rated with high SQI. In contrast, the field cropping sites characterized as abrupt Cohesive Dystrophic Red-Yellow Argisol (0.29), typic Dystrophic Haplic Cambisol (0.39), and latosolic Dystrophic Yellow Argisol (0.40) were rated with low SQI. MNF and AWF were the functions that most contributed to the increase or decrease of SQI scores. The SQI adapted expressed the agro-environmental reality of cacao cropping systems of Bahia, Brazil, and this could be a versatile tool to subsidize the adequate soil management of cacao plantations around the world.     

Integrated management reduces Globodera rostochiensis abundance and enhances nematode community composition

The potato cyst nematode is a major threat to potato production worldwide. In the highlands of Veracruz State, Mexico, potato cultivation has been the main economic activity during the last seven decades, and it is severely affected by the high abundance of Globodera rostochiensis. In this study, the field efficacy of chemical nematicides, nematophagous fungi, crop rotation and the combination of the latter two strategies were assessed on G. rostochiensis abundance while also considering their effects on the free-living nematode community. Integrated management combining the use of nematophagous fungi and crop rotation was the most effective strategy for decreasing the abundance of G. rostochiensis (up to 13%). Additionally, high diversity, low disturbance, and a slightly higher structure were observed in the nematode community in the integrated management treatment. Although nematophagous fungi and crop rotation separately were less effective in reducing G. rostochiensis abundance (41% and 23%, respectively), the free-living nematode community was not drastically affected. Chemical control was not only less effective in reducing the abundance of G. rostochiensis (up to 37%) but also affected the free-living nematode community to a greater extent. Our results suggest integrated management not only reduces G. rostochiensis abundance but also enhances free-living nematode community.     

A winter intercrop of faba bean and rapeseed for silage as a substitute for Italian ryegrass in rotation with maize

In order to combine the ability of legumes to fix atmospheric nitrogen and the cruciferous capacities to mobilize soil nutrients and herbicide action, the aim of this work was to evaluate an alternative winter intercrop (faba bean-rapeseed) as a replacement of Italian ryegrass culture in a rotational system with maize as summer crop. For this purpose, two adjacent plots were used during three agronomic years (2011–2012, 2012–2013 and 2013–2014) to evaluate the agronomic performance through the forage production, nutritional composition of forage and silage, and the effects on soil fertility. The Italian ryegrass was cultivated under conventional management: using chemical fertilization and recommended dosages of herbicides. The faba bean-rapeseed intercrop was cultivated under an alternative management: organic fertilization and less herbicide supply. The intercrop provides higher forage yield per hectare than Italian ryegrass, with greater protein (kg ha^?1) and similar energy (GJ ha^?1) yields. The intercrop allows reducing the inputs of chemical fertilization and herbicides, and it has a positive effect on the balance of soil nutrients, especially increasing the potassium, calcium and magnesium contents. The results show that faba bean-rapeseed intercrop could be an alternative to the Italian ryegrass as winter crop.     

Inter-tree and intra-tree variation in the physical properties of wood of laurel (<Emphasis Type="Italic">Laurus nobilis</Emphasis>)

The laurel (Laurus nobilis L.) is a common species in southern Europe, but the properties of its wood are not well described in the literature and from that perspective any novel information is valuable. Because of that, a group of laurels was felled for the analysis of wood properties on small defect-free specimens (17 trees and 1250 valid specimens). The sampled wood was moderately heavy and unstable. The following mean values were obtained (density at 12% moisture content 699 kg m^?3; basic density 566 kg m^?3; total volumetric shrinkage 18.0%; volumetric shrinkage coefficient 0.59%). Highly significant inter-tree and intra-tree variation was observed for most of the properties considered. The inter-tree variation was attributed to tree dimensions, being remarkable that volumetric, radial and tangential shrinkage coefficients were significantly related to breast height diameter and slenderness. The trends of these variables suggest that in trees older than those used in the study (24–41 years old) the dimensional stability would increase. As regards the inter-tree variation, a low but highly significant decrease was found for density at highest positions in the tree. Volumetric and linear shrinkage diminish very significantly along the stem. Due to the uniformity of density and the increment of wood dimensional stability along the trunk, the harvesting of the full stem is advisable.     

Genetic diversity,population structure,and correlations between locally adapted zebu and taurine breeds in Brazil using SNP markers

Genetic diversity is one of the most important issues in studies on conservation of cattle breeds and endangered species. The objective of this study was to estimate the levels of genetic differentiation between locally adapted taurine (Bos taurus taurus) and zebu (Bos taurus indicus) breeds in Brazil, which were genotyped for more than 777,000 SNPs. The fixation index (F _ST), principal component analysis (PCA), and Bayesian clustering were estimated. The F _ST highlighted genetic differentiation between taurine and zebu breeds. The taurine lines, Caracu and Caracu Caldeano, had significant genetic differentiation (F _ST close to 5%) despite their recent selection for different uses (meat and milk). This genetic variability can be used for conservation of locally adapted animals, as well as for breeding programs on zebu breeds. Introgression of zebu in locally adapted breeds was identified, especially in Curraleiro Pé-Duro breed. The Gyr breed, however, had low breed purity at genomic level due to its very heterogeneous mixing pattern.     

Longitudinal study of bovine rotavirus group A in newborn calves from vaccinated and unvaccinated dairy herds

Reports of rotavirus excretion in calves usually result from cross-sectional studies, and in face of the conflicting results regarding protection of calves born to vaccinated dams against diarrhea, the aim of the present study was to evaluate rotavirus excretion in dairy calves born to vaccinated or unvaccinated dams, to identify the genotypes of bovine rotavirus group A (RVA) strains isolated from these animals as well as to investigate characteristics of the disease in naturally occurring circumstances throughout the first month of life. Five hundred fifty-two fecal samples were taken from 56 calves, 28 from each farm and, in the vaccinated herd, 11/281 samples (3.91%) taken from six different calves tested positive for RVA while in the unvaccinated herd, 3/271 samples (1.11%) taken from 3 different calves tested positive. The genotyping of the VP7 genes showed 91.2% nucleotide sequence identity to G6 genotype (NCDV strain), and for the VP4 gene, strains from the vaccinated herd were 96.6% related to B223 strain, while strains from the unvaccinated herd were 88% related to P[5] genotype (UK strain). Genotypes found in this study were G6P[11] in the vaccinated herd and G6P[5] in the unvaccinated herd. All calves infected with rotavirus presented an episode of diarrhea in the first month of life, and the discrepancy between the genotypes found in the commercial vaccine (G6P[1] and G10P[11]) and the rotavirus strains circulating in both vaccinated and unvaccinated herds show the importance of keeping constant surveillance in order to avoid potential causes of vaccination failure.     

Spatialization of Brazilian pig production: relationship between productive,physical, environmental,and socio-economic variables

Brazilian pig production spans over a large territory encompassing regions of different climatic and socio-economic realities. Production, physical, socio-economic, and environmental data were used to characterize pig production in the country. Multivariate analysis evaluated indices including number productivity, production levels, and income from pigs, together with the average area of pig farm and socio-economic variables such as municipal human development index, technical guidance received from agricultural cooperatives and industrial companies, number of family farms, and offtake; and finally, environmental variables: latitude, longitude, annual temperature range, solar radiation index, as well as temperature and humidity index. The Southern region has the largest herd, number of pigs sold/sow, and offtake rate (p < 0.05), followed by the Midwest and Southeast. No significant correlations were seen between production rates and productivity with the socio-economic and environmental variables in the regions of Brazil. Production indexes, productivity, and offtake rate discriminated Northeast and Midwest and Northeast and Southeast regions. The Northern region, with a large area, has few and far-between farms that rear pigs for subsistence. The Northeast region has large herds, but low productivity. Number of slaughtered pigs has been variable over the past three decades, with few states responsible for maintaining high production in Brazil. However, the activity can be effective in any region of the country with technology and technical assistance adapted to regional characteristics.     

Correlation between osteoarthritic changes in the stifle joint in dogs and the results of orthopedic,radiographic, ultrasonographic and arthroscopic examinations

Osteoarthritis (OA) is a chronic, degenerative disease affecting the articular cartilage and subchondral bone that causes pain and inhibits movement. The stifle’s joint fibrous capsule contains the synovial membrane, which produces cartilage nutrients. A ruptured cranial cruciate ligament injures the joint and produces OA. Osteoarthritis diagnosis starts with clinical radiographic and ultrasonographic tests, although the latter is not used very much in dog and cat clinics for this purpose. The objective of this study was to establish the correlation among the results of orthopedic, radiographic, ultrasonographic examinations and structural anatomical changes revealed by arthroscopic evaluation to diagnose stifle joint OA and determine risk factors in the dogs affected. Of 44 clinical cases of OA included in the study, 88.64% had ruptured of cranial cruciate ligaments. The correlation between synovial fluid effusion and osteophytosis was of 0.84. It was concluded that there is good diagnostic agreement between synovial fluid effusion and osteophytosis when dealing with stifle joint OA. Risk factors for dogs regarding the development of stifle joint OA included: ruptured cranial cruciate ligaments or patella luxation, female dogs and weight over 10 kg.     

An optimized high quality male DNA extraction from spermatophores in open thelycum shrimp species

The crucial step of most of the current genetic studies is the extraction of DNA of sufficient quantity and quality. Several genomic DNA isolation methods have been described to successfully obtain male DNA from shrimp species. However, all current protocols require invasive handling methods with males for DNA isolation. Using Aristeus antennatus as a model we tested a reliable non‐invasive differential DNA extraction method to male DNA isolation from spermatophores attached to female thelycum. The present protocol provides high quality and quantity DNA for polymerase chain reaction amplification and male genotyping. This new approach could be useful to experimental shrimp culture to select sires with relevant genetic patterns for selective breeding programs. More importantly, it can be applied to identify the mating pairs and male structure in wild populations of species as A. antennatus, where males are often difficult to capture. Our method could be also valuable for biological studies on other spermatophore‐using species, such as myriapods, arachnids and insects.