Identification,characterization and full-length sequence analysis of a novel endornavirus in common sunflower (Helianthus annuus L.)

To identify the possible quarantine viruses in seven common sunflower varieties imported from the United States of America and the Netherlands, we tested total RNAs extracted from the leaf tissues using next-generation sequencing of small RNAs. After analysis of small RNA sequencing data, no any quarantine virus was found, but a double-stranded RNA(dsRNA) molecule showing typical genomic features of endornavirus was detected in two varieties, X3939 and SH1108. Full-length sequence and phylogenetic analysis showed that it is a novel endornavirus, temporarily named as Helianthus annuus alphaendornavirus(HaEV). Its full genome corresponds to a 14 662-bp dsRNA segment, including a 21-nt 5′ untranslated region(UTR), 3' UTR ending with the unique sequence CCCCCCCC and lacking a poly(A) tail. An open reading frame(ORF) that encodes a deduced 4 867 amino acids(aa) polyprotein with three domains: RdRP, Hel and UGT(UDP-glycosyltransferase). HaEV mainly distributed in the cytoplasm but less in the nucleus of leaf cells by fluorescence in situ hybridization(FISH) experiment. This virus has a high seed infection rate in the five varieties, X3907, X3939, A231, SH1108 and SR1320. To our knowledge, this is the first report about the virus of the family Endornaviridae in the common sunflower.     

有益生防菌包衣处理不同油菜品种种子对菌核病发病率及产量的影响研究

油菜菌核病是油菜上的重要病害之一，在四川局部地区油菜根肿病时有发生，严重威胁到油菜安全生产。以油菜菌核病和根肿病为防治对象，与华中农业大学合作，利用其筛选的有益生防菌，选择双低和高芥酸油菜品种国豪油8号和绵油309，对其种子进行包衣处理，分别在无和有根肿病史的水旱轮作地，开展田间试验。试验结果表明：有益生防菌包衣处理的菌核病发病率均低于没有包衣处理；包衣处理的不同品种产量均高于没有包衣处理，但品种间有差异；包衣处理过的高芥酸油菜品种绵油309的产量高于包衣处理过的双低油菜品种国豪油8号；在有根肿病史试验田种植的菌核病发病率低于无根肿病史试验田，产量高于无根肿病史试验田。包衣处理对油菜根肿病的防治效果不显著。     

脲酶抑制剂与硝化抑制剂对稻田土壤氮素转化的影响

【目的】本研究旨在阐明脲酶抑制剂(urease inhibitor,UI)和硝化抑制剂(nitrification inhibitor,NI)对稻田土壤氮素转化的影响,探讨抑制剂提高稻谷产量以及氮肥利用率的机理。【方法】本试验设在我国南方红壤稻田,共5个处理:1)不施氮肥(CK);2)尿素(U);3)尿素+脲酶抑制剂(U+UI);4)尿素+硝化抑制剂(U+NI);5)尿素+脲酶抑制剂+硝化抑制剂(U+UI+NI);脲酶抑制剂采用N-丁基硫代磷酰三胺(NBPT),硝化抑制剂采用3,4-二甲基吡唑磷酸盐(DMPP)。在水稻分蘖期和孕穗期测定土壤脲酶活性、硝酸还原酶活性、土壤铵态氮含量、硝态氮含量以及微生物碳、氮的含量,分析NBPT与DMPP对水稻两个主要生育期土壤氮素供应的影响,比较各处理的产量以及氮肥利用率,通过逐步回归分析研究以上各指标对产量的影响,探明脲酶抑制剂NBPT与硝化抑制剂DMPP在稻田的增效机理。【结果】1)与单施尿素相比,添加NBPT以及NBPT与DMPP配施均显著提高稻谷产量与地上部氮素回收率,两个处理分别增产6.56%与8.24%,氮素回收率提高幅度为19.4%与23.7%。2)与单施尿素相比,添加NBPT以及NBPT与DMPP配施,显著降低水稻分蘖期的土壤脲酶活性和铵态氮含量,显著提高孕穗期的铵态氮含量,而对此时期的脲酶活性无显著影响,所有处理对两个时期的硝态氮含量、硝酸还原酶活性、微生物量碳、氮含量均无显著影响;因此,NBPT对于抑制脲酶活性以及提高铵态氮含量的作用主要在孕穗期之前,而单施DMPP没有显著效应。3)从各项土壤指标与水稻产量相关性的逐步回归分析结果来看,水稻分蘖期与孕穗期稻田土壤中铵态氮含量对水稻产量影响显著,而且孕穗期的影响大于分蘖期,其余指标则对产量无显著影响。【结论】脲酶抑制剂NBPT以及NBPT与硝化抑制剂DMPP配施显著提高孕穗期土壤中的铵态氮含量,显著提高稻谷产量以及地上部氮素回收率,证明了生产上氮肥后移的重要意义。     

Establishing an eyeball-weight relationship for Litopenaeus vannamei using machine vision technology

This study aimed to establish a shrimp eyeball-weight relationship model for Litopenaeus vannamei using machine vision technology. A total of 295 shrimp were sampled from a recirculating aquaculture system (RAS). The long-axis length (d), body length (L), and body weight (W) of each individual was measured. The long axis length of the shrimp eyeball was identified and measured using machine vision technology. Continuous fitting and piecewise fitting models were used to construct the eyeball-weight relationship model for L. vannamei. The continuous fitting relationship model was described as: W = 38.865d^2.7914, while the piecewise model was described as: d < 2 mm, W = 0.0326d^3.7363, R² = 0.9288; 2 mm ≤ d < 3.9 mm, W = 0.0401d^3.104, R² = 0.9629; 3.9 mm ≤ d < 5.8 mm, W = 0.0421d^3.0311, R² = 0.9216; 5.8 mm < d, W = 0.103d^2.6226, R² = 0.9457. The root mean square error (RMSE) of the piecewise fitting model (0.0244, 0.1575, 0.5034, 0.7072) was smaller than the continuous fitting model (0.8229). The correlation coefficient (R²) of the piecewise model (0.9288, 0.9629, 0.9216, and 0.9457) was similar to that of the continuous fitting model (R² = 0.9621). The results indicated that the piecewise fitting model is suitable for calculating the biomass of L. vannamei in RAS and provides a novel way of estimating the biomass of L. vannamei cultured in RAS. The piecewise fitting model can also provide the foundation of evaluating the production of shrimp using underwater image recognition in intelligent aquaculture systems.     

长期施肥处理对双季晚稻叶绿素荧光特征及籽粒产量的影响

研究施肥模式对水稻叶绿素含量及荧光参数的调节作用,对提高水稻光能利用效率及籽粒产量具有重要意义。本研究以水稻品种赣929为试验材料,比较长期定位施磷钾肥(PK)、施氮磷钾肥(NPK)、等养分条件下70%氮磷钾肥配合施用30%有机肥(70F+30M)、50%氮磷钾肥配合施用50%有机肥(50F+50M)、30%氮磷钾肥配合施用70%有机肥(30F+70M)条件下水稻叶绿素荧光参数和产量变化特征。结果表明,水稻旗叶叶绿素含量从齐穗期到成熟期呈下降趋势,且表现为30F+70M50F+50M70F+30MNPKPK。水稻叶绿素荧光参数Fv/Fm随水稻生育期的推进呈降低趋势,其中PK处理Fv/Fm值最低,而施氮处理比不施氮处理Fv/Fm值增加了2.85%～4.18%。叶绿素荧光参数qL、ΦPSII在NPK处理中表现为齐穗期较高, 20 d之后显著降低;在50F+50M、30F+70M处理中表现为齐穗期较低, 20 d以后显著增加;在PK处理、70F+30M处理中一直处于较高水平。NPQ变化趋势与qL基本相反。ETR-PAR光响应曲线拟合结果表明, 70F+30M处理ETRmax、?和Ek值在齐穗期和20 d后值均最高。综合看来,等养分条件下配施30%有机肥具有最优的叶绿素荧光指标组合及籽粒产量;而配施超过50%有机肥由于前期热耗散增大使得用于光合作用的光能份额减少,而施用氮磷钾肥处理则由于后期的衰老使得光能利用效率下降。     

极端暴雨条件下黄土丘陵沟壑区土壤蓄水能力和入渗规律

黄土高原退耕还林还草工程实施后,下垫面环境条件的变化可能对流域水文过程、水文通量、水量平衡以及生态系统产生十分重要的影响。研究极端暴雨条件下剖面土壤蓄水能力和入渗规律,对于阐明流域产汇流过程和影响机制具有重要的科学价值。采用土壤墒情仪对陕北"7·26"特大暴雨事件下黄土丘陵沟壑区草地剖面土壤水分进行了实时动态监测,分析了极端暴雨条件下剖面土壤水分的动态变化和蓄水过程,利用Horton入渗模型模拟了剖面土壤水分湿润锋的运动过程,揭示了极端暴雨条件下剖面土壤水分的入渗规律。结果表明:(1)极端暴雨条件下,黄土丘陵沟壑区坡面草地不同深度层次土壤水分与降雨过程的响应不同,具有层次性和明显的滞后效应,其中,0～140 cm是影响该地区土壤水文过程的关键层次;(2)土壤水分再分配结束时,湿润锋最深深度达140 cm,土壤蓄水量达225.99 mm,较降雨前95.37 mm增加了1.37倍;(3)极端暴雨过程中湿润锋的运动随时间呈对数递减关系,其稳渗速率随容重增加而减小,呈指数函数递减;(4)极端降雨过程中该地区坡面草地的产流机制仍以超渗产流为主,对于揭示流域的产汇流机制和完善水文预报模型具有重要的科学意义。     

Sorghum extrusion process combined with biofortified sweet potato contributed for high iron bioavailability in Wistar rats

This study aimed to evaluate the effect of sorghum and sweet potato on the bioavailability of iron, gene expression of proteins involved in iron metabolism and the plasma antioxidant capacity in animals fed with whole sorghum grains processed by dry heat or extrusion, combined or not with sweet potato flour with high content of carotenoids. Five experimental groups were tested (n = 7): dry heat sorghum flour (DS); extruded sorghum flour (ES); whole sorghum flour + sweet potato flour (DS + SP); extruded sorghum flour + sweet potato flour (ES + SP) and positive control (FS). The evaluations included: hemoglobin gain, hemoglobin regeneration efficiency, gene expression of divalente metal transporter 1 (DMT-1), duodenal citochroma B (DcytB), ferroportin, hephaestin, transferrin and ferritin and total plasma antioxidant capacity (TAC). The ES + SP group showed higher (p < 0.05) expression of DcytB, ferroportin and hephaestin when compared to the control group. The DS group showed high (p < 0.05) expression of DMT-1 and the ES showed high mRNA expression of transferrin and ferritin. The changes in the sorghum physicochemical properties from extrusion process reduced the iron and phytate content, and increased the gene expression of proteins involved in iron metabolism, improving iron bioavailability. The combination of sweet potato and sorghum flour (dry or extruded) improved the iron capture and total antioxidant capacity, probably due to the presence of β-carotene and antioxidant compounds.     

一种基于RPA的番茄褪绿病毒检测方法

番茄褪绿病毒Tomato chlorosis virus(ToCV)引起番茄褪绿病毒病,给番茄生产造成严重危害。开发快速准确的检测方法对该病害的防控具有重要意义。利用番茄褪绿病毒外壳蛋白(CP)基因序列,设计特异性引物,建立了ToCV的重组酶聚合酶等温扩增(recombinase polymerase amplification, RPA)检测方法,同时分析了该方法的灵敏度和特异性。结果表明,建立的ToCV-RPA方法在38℃恒温下40 min可从ToCV阳性的番茄样品中扩增出246 bp的特异性条带。扩增时间短,对设备要求低,且与番茄其他病毒无交叉反应,特异性好,灵敏度可达到PCR方法的10倍,适用于ToCV的快速检测。     

胡麻脂肪酸去饱和酶基因(fads)差异表达分析

为了了解fad基因在胡麻蒴果发育过程中对不饱和脂肪酸的调控,对高、中、低三个不同亚麻酸(C18:3)含量的胡麻品种(’CDC Gold’,‘内亚7号’,’Linola’)进行了不同时期的品质测定,以及脂肪酸去饱和酶2a基因(fad2a)、脂肪酸去饱和酶2b基因(fad2b)、脂肪酸去饱和酶2c基因(fad2c)、脂肪酸去饱和酶3a基因(fad3a)、脂肪酸去饱和酶3b基因(fad3b)的qRT-PCR定量分析。结果表明,随着蒴果成熟,可溶性糖含量呈降低趋势,粗脂肪与粗蛋白不断积累,且差异显著(p<0.05)。fad2a基因、fad3a基因以及fad3b基因在各个时期中的表达符合正态分布。以0 d的蒴果为对照,在胡麻种子形成过程中,‘内亚7号’的三个基因在5 d和15 d的表达量迅速增加,到30 d时急剧减少,15 d的fad2a基因表达量为5.23倍,fad3a基因表达量是fad2a基因表达量的14.52倍,fad3b基因的表达量是fad2a基因表达量的16.14倍,表明这三个基因参与不饱和脂肪酸积累过程。在低亚麻酸含量品种‘Linola’30 d中,fad3a基因是fad2a基因表达量的52.71倍,fad3b呈下调趋势;在高亚麻酸含量品种‘CDCGold’30d中,fad3a基因与fad2a基因的表达量均呈下调趋势,fad3b的表达量为3.92倍;在中等亚麻酸含量品种‘内亚7号’中,fad2a基因表达量降低了0.31倍,fad3a基因是fad3b基因表达量的1.87倍。fad2b基因、fad2c基因熔解曲线不稳定,峰值低,可以在后续试验中继续探索。     

番茄褪绿病毒在湖南省首次发生

2016年7月在湖南省蔬菜病害调查中发现,4种茄科蔬菜表现出叶脉间褪绿、叶片黄化等症状,疑似被番茄褪绿病毒(Tomato chlorosis virus,To CV)感染,同时叶片背面聚集了大量烟粉虱。采用To CV热激蛋白(heat shock protein 70,HSP70)序列的特异性引物对采集的番茄、茄子、辣椒、马铃薯样品和烟粉虱样品进行RT-PCR检测,均扩增出目标条带,且扩增序列与北京番茄To CV分离物(KC887999.1)部分序列相似度为99.0%,确认采集样品被To CV感染。4种茄科蔬菜To CV的感染率达70%~100%;发病叶片上烟粉虱的带毒率为66.7%~87.5%;鉴定出烟粉虱的生物类型为MED烟粉虱。这是湖南省首次确认该病毒,需要引起关注和加强防范。