Molecular typing of Streptococcus agalactiae isolates from fish

The genetic variability among Streptococcus agalactiae isolates recovered from fish was characterized using single-stranded conformation polymorphism (SSCP) analysis of the intergenic spacer region (ISR), and amplified fragment length polymorphism (AFLP) fingerprinting. A total of 46 S. agalactiae cultures isolated from different fish species and geographic origins as well as related reference strains were included in the study. ISR-SSCP divided the S. agalactiae isolates analysed into five distinct genotypes. Genotype 1 grouped all Kuwait isolates while genotype 4 clustered the majority of non-Kuwait isolates (USA, Brazil and Honduras). AFLP analysis offered a higher resolution level by dividing the isolates into 13 different genotypes. Two different AFLP profiles were identified within the Kuwait isolates. When data from both ISR-SSCP and AFLP were combined through a multidimensional analysis (MDS), a good correlation between geographical origin and genotypes was observed. Both AFLP and ISR-SSCP revealed genetic differences between S. agalactiae isolates from fish. While AFLP offered a higher resolution, ISR-SSCP also provided valid information being a simpler and faster method.     

全基因组SNP分型技术在畜禽遗传育种研究中的应用

随着畜禽资源分子鉴定、物种进化、全基因组育种等热点领域的逐渐兴起,准确的全基因组SNP分型成为了畜禽基因组研究的关键。基因芯片、重测序、简化基因组测序及靶向捕获测序等全基因组SNP分型技术已广泛应用于畜禽基因组研究中。本文概述了全基因组SNP分型技术的原理及其在全基因组关联分析、选择信号分析和畜禽遗传资源背景分析等方面的应用,以期为畜禽基因组研究和育种应用提供借鉴和参考。     

检查法林分生长预测及择伐模拟研究

检查法是一种适合于异龄林经营的集约作业方法，由于目前试验时间还较短（第１择伐周期１９８７－１９９２年），需要对其长期经营效果作出预测。文中提出了一种修正参数预测模型（ＭＰＰＭ）和线性规划方法相结合对于林分进行生长预测和择伐模拟研究的方法。拟合林分直径分布采用了形状灵活的Ｗｅｉｂｕｌｌ分布形式，使得这种方法很适合于异龄林分（反Ｊ形直径分布）的生长预测（当然也适于同龄林），特别是当径阶株数出现突然变化     

杨树微纤丝角的变异及其与木材性质的相关关系

微纤丝角为细胞次生壁S2层微纤丝排列方向与细胞主轴所形成的夹角,与木材的物理性质、力学性质和化学性质都有着直接的关系。应用x射线衍射法测定了7个杨树无性系(14株样木)胸径处各年轮的微纤丝角,并对应分析和测定了各年轮的木材基本密度、纤维长度、纤维宽度和纤维素含量。研究结果表明,杨树微纤丝角在年轮间存在显著差异,其径向变异规律为从髓心向外以微纤丝角逐渐降低,年轮间的平均微纤丝角在7.8旱?8褐洌荒静幕久芏取⑾宋ざ取⑾宋矶群拖宋睾吭谀曷旨湟泊嬖谙灾钜臁O喙胤治霰砻鳎⑾怂拷怯肽静幕久芏取⑾宋ざ取⑾宋矶群拖宋睾看嬖谙灾母合喙毓叵??0.01),相关系数分别为-0.450、-0.586、-0.516和-0.660。回归分析结果表明,多项式方程可较好地描述杨树微纤丝角与所测定的木材性质的关系,相关系数均在-0.45以上(n=125)。本文的研究结果认为,在今后针对杨树材性改良的育种计划中,微纤丝角是一个重要的选育和改良指标。图3表3参34。     

Exploring the limitations of pathophysiological indicators used for targeted selective treatment in sheep experimentally infected with Haemonchus contortus

Identifying which sheep to treat as part of a Targeted Selective Treatment approach to gastro-intestinal nematode control relies entirely on the efficacy of the indicators. Indicators such as FAMACHA© (anaemia), DISCO (diarrhea) and reductions in weight gains were designed specifically to reflect those sheep experiencing symptomatic consequences of infection. Using the gastro-intestinal nematode Haemonchus contortus as a model species, this study explored the utility and sensitivity of these indicators under controlled experimental conditions on 63 adult sheep. The potential effect of sheep with different H. contortus resistance phenotypes on indicator efficacy was compared in three different phenotypes, i.e. high (Blackbelly females), medium (Blackbelly rams) and low resistance (Romane rams). The potential effect of the H. contortus isolate on indicator efficacy was also explored by using four different isolates, with varying anthelmintic resistance capacities, to infect the sheep. We limited the study to the first month of infection to evaluate the interest of these indicators as an early predictive means for controlling infection. The pathophysiological indicators FAMACHA© and DISCO do not reflect infection intensity based on Faecal Egg Counts, nor do reductions in weight gains. FAMACHA© was however a good indicator of anaemia with strong correlations to haematocrit. There was little agreement among the three indicators to identify the same animals in need of treatment and even combining them did not increase their predictive value of infection intensity or relative host damage from infection. The indicator sensitivity was influenced by the H. contortus isolate and sheep resistance phenotype in which they were tested. One isolate was poorly infective but induced high levels of anaemia (FAMACHA©) and diarrhea (DISCO) compared to the three others. The FAMACHA© and DISCO had higher values in the sheep group with a medium resistance phenotype (Blackbelly rams) indicating higher levels of damage compared to the high and low resistance phenotypes. We conclude that there is no ‘one size fits all’ approach to the use of indicators for Targeted Selective Treatment and the indicators should be calibrated to farm-specific conditions to increase their efficacy.     

Real-time PCR genotyping assay for feline erythrocyte pyruvate kinase deficiency and mutant allele frequency in purebred cats in Japan

Erythrocyte pyruvate kinase (PK) deficiency is an inherited glycolytic erythroenzymopathy caused by mutations of the PKLR gene. A causative mutation of the feline PKLR gene was originally identified in Abyssinian and Somali cats in the U.S.A. In the present study, a TaqMan probe-based real-time PCR genotyping assay was developed and evaluated for rapid genotyping and large-scale screening for this mutation. Furthermore, a genotyping survey was carried out in a population of four popular purebred cats in Japan to determine the current mutant allele frequency. The assay clearly displayed all genotypes of feline PK deficiency, indicating its suitability for large-scale survey as well as diagnosis. The survey demonstrated that the mutant allele frequency in Abyssinian and Somali cats was high enough to warrant measures to control and prevent the disease. The mutant allele frequency was relatively low in Bengal and American Shorthair cats; however, the testing should still be carried out to prevent the spread of the disease. In addition, PK deficiency should always be considered in the differential diagnosis of anemia in purebred cats in Japan as well as worldwide.     

基于Maize6H-60K芯片精准分型的玉米DH群体遗传规律研究

为解析玉米双单倍体(doubled haploid,DH)群体的遗传规律,使用自主研发的精准分型策略对‘先玉335’DH群体的Maize6H-60K芯片结果进行筛选校正和解析。结果表明:1)通过剔除单态、杂合、缺失标记,使用精准分型策略对标记准确聚类,获得的18 947个SNPs标记覆盖玉米全基因组。2)该群体在10条染色体上平均交换次数为1.84~1.03次,在6号染色体随体区域的交换次数显著减少。3)该群体在1、2、3、8号染色体上存在明显的偏分离现象;通过高频次、高密度的交换,染色体两臂端粒区域理论分离系数表现出回归到50%的趋势。利用获得的重组交换及分离规律可提高从DH群体中筛选到预期育种材料的准确性。     

Survival of Atlantic salmon captured in and released from a commercial trap-net: Potential for selective harvesting of stocked salmon

The major wild Atlantic salmon stocks in the Baltic Sea began to recover in the late 1990s. This recovery has been partly due to strict regulations in the Gulf of Bothnia that effectively prevent salmon fisheries during the peak migration. About half of the migrating salmon, however, are reared fish that could be harvested. We simulated a limited trap-net fishery that selectively harvested reared salmon and released wild fish, and studied the survival and migration of the released salmon. We tagged and released 1970 salmon caught in the trap-nets along the coast in 2001 and 2002. The mean maximum capture and release induced mortality of salmon was 11%, ranging between 4% and 21% in different release groups by year, sea age and number of releases. The cumulative mortality for the total salmon population on their spawning migration in the Gulf of Bothnia was below 5%, and it would not increase considerably after the first capture and release events, provided fishing effort is not excessive and fish are handled properly. Survival of trap-net captured and released Baltic salmon appears high and their migration behavior is not altered due to this handling. Several preconditions, however, should be considered before selective fishing is introduced in the Gulf of Bothnia salmon fishery.     

弓形虫基因分型研究进展

弓形虫可感染多种动物引起严重的弓形虫病,为了对不同宿主感染的弓形虫株基因型差异及不同基因型弓形虫虫株的致病力差异进行进一步研究,弓形虫基因型的分析多采用限制性片段长度多态性PCR（PCR-RFLP）、随机扩增多态性DNA、多位点PCR-RFLP分析、DNA序列分析和微卫星DNA序列分析等技术,扩增位点多选择SAG1、SAG2、SAG3、BTUB和GRA6等遗传标记。传统的弓形虫基因型主要有3个,随着基因型研究的不断深入,越来越多的基因型被发现。本文就弓形虫基因分型研究进展进行讨论分析。