基于变分法的FY-3C土壤水分产品适用性分析

FY-3C作为我国风云三号首颗业务卫星,其上搭载的微波成像仪(MWRI)可提供全天候土壤水分数据。【目的】获取高质量土壤水分数据可以对合理利用土壤水资源提供参考,为农田干旱监控和预报提供基础参数。【方法】选取山东省农业气象站土壤水分数据对FY-3C土壤水分产品进行检验,为获取更高质量FY-3C土壤水分产品,选用变分订正方法对FY-3C土壤水分产品进行偏差订正。【结果】FY-3C升降轨土壤水分产品与地面站土壤水分相关系数R分别为0.481 6和0.408 2,RMSE分别为0.099 6和0.091 0 cm~3/cm~3。订正后FY-3C升降轨土壤水分产品与地面站土壤水分R分别为0.701 4和0.892 4,RMSE分别为0.021 7和0.011 cm~3/cm~3。对2016年3—4月山东省干旱过程订正前、后FY-3C土壤水分变化情况进行对比,订正后FY-3C土壤水分更准确地反映出此次干旱过程。【结论】FY-3C土壤水分产品可以准确反映土壤水分随时间的变化趋势,订正后FY-3C土壤水分产品与地面站土壤水分间误差减小、相关性提高。     

Time‐lapse monitoring of soil water content using electromagnetic conductivity imaging

The volumetric soil water content (θ) is fundamental to agriculture because its spatiotemporal variation in soil affects the growth of plants. Unfortunately, the universally accepted thermogravimetric method for estimating volumetric soil water content is very labour intensive and time‐consuming for use in field‐scale monitoring. Electromagnetic (EM) induction instruments have proven to be useful in mapping the spatiotemporal variation of θ. However, depth‐specific variation in θ, which is important for irrigation management, has been little explored. The objective of this study was to develop a relationship between θ and estimates of true electrical conductivity (σ) and to use this relationship to develop time‐lapse images of soil θ beneath a centre‐pivot irrigated alfalfa (Medicago sativa L.) crop in San Jacinto, California, USA. We first measured the bulk apparent electrical conductivity (EC_a – mS/m) using a DUALEM‐421 over a period of 12 days after an irrigation event (i.e. days 1, 2, 3, 4, 6, 8 and 12). We used EM4Soil to generate EM conductivity images (EMCIs). We used a physical model to estimate θ from σ, accounting for soil tortuosity and pore water salinity, with a cross‐validation RMSE of 0.04 cm³/cm³. Testing the scenario where no soil information is available, we used a three‐parameter exponential model to relate θ to σ and then to map θ along the transect on different days. The results allowed us to monitor the spatiotemporal variations of θ across the surveyed area, over the 12‐day period. In this regard, we were able to map the soil close to field capacity (0.27 cm³/cm³) and approaching permanent wilting point (0.03 cm³/cm³). The time‐lapse θ monitoring approach, developed using EMCI, has implications for soil and water use and management and will potentially allow farmers and consultants to identify inefficiencies in water application rates and use. It can also be used as a research tool to potentially assist precision irrigation practices and to test the efficacy of different methods of irrigation in terms of water delivery and efficiency in water use in near real time.     

Biochar has little effect on soil dissolved organic carbon pool 5 years after biochar application under field condition

Biochar application can improve soil properties, such as increasing soil organic carbon content, soil pH and water content. These properties are important to soil dissolved organic carbon (DOC); however, the effects of biochar on DOC concentration and composition have received little research attention, especially several years after biochar application under field conditions. This study was conducted in a long‐term experimental field where the biochar was only applied once in 2009. The purpose of the study was to investigate the effect of different biochar application rates (0, 30, 60 and 90 t ha^?1) on the dynamics of soil water content, DOC concentration and DOC compositions (reducing sugar, soluble phenol and aromatics) over nine samplings during a 12‐month period in 2014. Our results showed that soil water content and DOC concentration varied from 7.1% to 14.5% and 59 to 230 mg C kg^?1 soil during the 12 months, respectively. However, the biochar application rates did not significantly (p > 0.05) affect soil water content, DOC concentration and DOC composition at the same sampling period. The DOC concentration across the biochar treatments was positively correlated to soil water content. Moreover, the DOC composition (reducing sugar, soluble phenol or aromatics) and their concentrations were positively correlated to the total DOC concentration. In addition, biochar did not affect soil bulk density, pH, saturated hydraulic conductivity and crop yields. The results indicated that some benefits of biochar to soil may not persist 5 years after the application of biochar under a field condition.     

春白萝卜新品种雪单3 号的选育

雪单3 号是利用双单倍体育种技术选育的春白萝卜新品种。母本ED0108A 是以梅花春萝卜× 白玉春萝卜进行花药培
养获得的DH 系为轮回父本，与不育系进行多次回交，转育成的雄性不育系。父本ED3128 是由迟花春萝卜× 天鸿春萝卜进行
花药培养获得的DH 系。该品种生育期60 d（天），植株开展度45 cm，裂叶，小叶11 对，叶片数20，叶簇平展，叶色深绿；
肉质根长圆柱形，白皮白肉，根长36 cm，横径7.1 cm，单根质量1.1 kg，高抗黑腐病、芜菁花叶病毒病、黄瓜花叶病毒病和花
椰菜花叶病毒病，抗霜霉病，群体整齐度高。每667 m² 产量4 000～5 000 kg。适宜在湖北、湖南、河南、山东等地区早春栽培。     

Development of Nucleic Acid Lateral Flow Immunoassay Detection Method for Foot-and-mouth Disease Virus

In this article, through the combination of nucleic acid probes and immune chromatography, a simple, sensitive and specific detection system——nucleic acid lateral flow immunoassay (NALFIA) for amplifing foot-and-mouth disease virus (FMDV) 3D RT-PCR products was established.An ultrasensitive nucleic acid biosensor (NAB) based on streptavidin-labeled gold nanoparticles dual labels and lateral flow strip biosensor (LFSB) were used in this system.The biotinylated goat anti-rabbit IgG was marked to the NC membrane as the alleged strip and the anti-digoxin antibody was labeled to the NC membrane to capture the digoxin probe.After assemblying gold-labeled strip and detecting RT-PCR products, the detection limit of NALFIA was 0.3×10^-3 to 3×10^-3 μg/μL.The NALFIA was compared with agar gel electrophoresis analysis, the results showed that the sensitivity of NALFIA was higher than agar gel electrophoresis.There was an excellent agreement between the two methods.NALFIA was a method with high sensitive, low cost and short time.In conclusion, this method provided a good alternative to detect FMDV.     

H3N2亚型猪流感病毒HA和HA1蛋白的原核表达

为原核表达H3N2亚型猪流感病毒(SIV)的HA和HA1蛋白,通过RT-PCR方法获得SIV的HA和HA1基因,克隆至原核表达载体pMAL-c5X,并转化至原核表达菌Rosetta(DE3)中,表达菌经IPTG诱导表达后进行SDS-PAGE和Western blot分析。结果显示,成功表达了H3亚型SIV的HA和HA1蛋白,目的蛋白均以可溶性蛋白和包涵体两种形式存在,并与H3N2亚型SIV的HA单克隆抗体反应,说明HA和HA1蛋白具有良好的反应原性。     

3,5-二硝基水杨酸法与酶法测定甜玉米还原糖和蔗糖含量的比较

针对目前测定甜玉米还原糖和蔗糖含量的3,5-二硝基水杨酸法和酶法进行比较研究,分析两者在育种中的应用。结果显示:酶法的测量准确度比3,5-二硝基水杨酸法高,且其稳定性和重现性都优于3,5-二硝基水杨酸法。通过两种方法对10个甜玉米杂交种种子的还原糖和蔗糖含量的测定,证实了两种方法在甜玉米还原糖和蔗糖含量的检测上是一致的。从育种实践考虑,酶法适于样品数较小的检测,3,5-二硝基水杨酸法更适合于大批量样品的检测。     

利用QuantStudioTM 3D数字PCR分析转基因玉米MON863含量

QuantStudioTM 3D数字PCR (QuantStudioTM 3D digital PCR,3D-dPCR)是一种基于超高密度亲疏水微孔芯片实现数字PCR分液原理的新型核酸绝对定量平台,在转基因生物定量领域具有极大的应用前景.本研究基于3D-dPCR平台,以转基因玉米(Zea mays)MON863混合样品为例,建立基于单重和双重数字PCR体系的转基因生物(genetically modified organisms,GMOs)含量分析方法.与传统qRT-PCR比较发现,在缺乏样品纯度、纯合度信息的情况下,数字PCR能够较好地排除这些因素的影响,测定准确的量值.研究结果表明,QuantStudioTM 3D数字PCR是一种适用于转基因生物含量分析的精确定量方法,还可反映转基因玉米种子的基因型.本研究基于3D-dPCR建立的转基因玉米MON863单重和双重定量方法为转基因检测提供了新的方法和参考.     

Whole-genome sequence of a novel Chinese cyprinid herpesvirus 3 isolate reveals the existence of a distinct European genotype in East Asia

Cyprinid herpesvirus 3 (CyHV3), also known as koi herpesvirus (KHV), can be subdivided primarily into European and Asian genotypes, which are represented by CyHV3-U or CyHV3-I and CyHV3-J, respectively. In this study, the whole genome sequence of a novel Chinese CyHV3 isolate (GZ11) was determined and annotated. CyHV3-GZ11 genome was found to contain 295,119 nucleotides with 52.9% G/C content, which is highly similar to those of published CyHV3-U, CyHV3-I, and CyHV3-J strains. With reference to CyHV3-U, CyHV3-I, and CyHV3-J, CyHV3-GZ11 was also classified into 164 open reading frames (ORF), which include eight repeated ORFs. On the basis of the 12 alloherpeviruses core genes, results from phylogenetic analysis showed that CyHV3-GZ11 had closer evolutionary relationships with CyHV3-U and CyHV3-I than with CyHV3/KHV-J, which were also supported by genome wide-based single nucleotide substitution analysis and the use of a series of developed molecular markers. This study was the first to reveal the presence of a distinct European CyHV3 genotype in East and Southeast Asia at a whole genome level, which will evoke new insights on exploring the origin, evolution, and epidemiology of the virus.     

高含固率木质纤维素厌氧发酵物总DNA的4种提取方法比较

不同的样本特性和提取方法对获得微生物总DNA的质量有重要影响。文章基于高含固率木质纤维素厌氧发酵物腐殖酸、酚类物质含量高、质地均一性差、微生物浓度低的特点,研究了4种方法提取不同高含固率粪秸厌氧发酵物中微生物总DNA的效果。结果表明,常规的十二烷基磺酸钠法(sodium dodecyl sulfate,SDS)、十二烷基磺酸钠和溴化十六烷基三甲铵结合法(sodium dodecyl sulfate and cetyltrimethyl ammonium bromide,SDS-CTAB)和商业的粪便试剂盒法提取的DNA质量均较差,SDS法和试剂盒法未能获得聚合酶链式反应(polymerase chain reaction,PCR)扩增目的条带,SDS-CTAB法得到的条带较模糊;改进SDS-CTAB法获得的DNA杂质少、纯度高,具有较好的稳定性,A260/A280和A260/A230值分别为1.74~1.86和1.65~1.86,每克样品的DNA浓度在50 ng·μL^-1以上,电泳条带单一齐整、清晰明亮,PCR扩增的目的条带清晰度高,适宜后续分子生物学技术的分析。林格氏液洗脱、聚乙烯吡咯烷酮-40(Polyvinyl Pyrrolidone-40,PVP-40)洗涤液除杂以及裂解液和多种酶联合破壁是改进SDS-CTAB法获得该类专一性样本高质量微生物总DNA的关键步骤。