Establishment and application of an accurate identification method for fragrant soybeans

In order to screen the aroma characteristics of soybean,a new method was established which can quickly quantify the content of 2-acetyl-1pyrroline (2-AP),an important compound related to soybean aroma,using gas chromatography-mass spectrometry (GC-MS).Based on peak profile,total peak area and retention time as test indexes,an accurate identification method for fragrant soybeans was established.The optimum parameters of the protocol consisted of column temperature70°C,sample injector temperature 180°C,optimum extraction alcohol content 1 m L,Na Cl content 0.1 g,ultrasonication time10 min,and extraction time 1 h,which were established by using the orthogonal test of single factors and three factors with four levels (L_9(3)~4).2-AP content of leaves had significant correlations with seeds,which were easier to measure.The protocol was simple and easy to carry out,consumed only small amounts of reagents,and provided accurate and reliable results with good reproducibility.A total of 101 soybean genotypes from different geographical sources were analyzed using this protocol.The results showed that the average content of 2-AP was 0.29 mg L~(–1),ranging from 0.094 to 1.816 mg L~(–1),and the genetic diversity index was 0.54.Among all genotypes-tested,they were classified into three grades,including seven elite genotypes identified as"grade one fragrant soybeans",which were Zhonglong 608,Heinong 88,Ha13-2958,Hongmiandou,Heinong 82,Huangmaodou,and Jiyu 21.These results provide both an identification technique and several elite aroma genotypes for gene discovery and good quality breeding in soybean.     

1978—2018年中国农村环境管理政策演进特征——基于206份政策文本的量化分析

基于手工搜集的1978—2018年中国政府颁布的206份农村环境管理政策文本，从政策发布年度、政策发布主体、政策发布形式、政策作用对象、政策工具及政策效力6个维度构建分析框架，运用政策文献计量和内容分析方法分析了中国农村环境管理政策的演进特征。结果表明:1978年改革开放以来，中国农村环境管理政策在数量上呈整体持续上升态势；农村环境管理政策经历了探索起步(1978—1989年)、初步形成(1990—2004年)、快速发展(2005—2013年)和全面推进(2014年以后)4个阶段的演进；政策发布主体的行政级别较高且呈现多元化特征，政策联合决策程度高，但政策之间统筹性和协调性较低；政策绝大多数以通知、意见等形式发出，缺乏权威性和规范性；政策的着力点主要在原生态保护层面，对农村人居环境整治的重视程度不够；命令控制型政策是政府最为偏好的农村环境管理政策工具，经济激励型、信息公开型和自愿参与型政策工具使用不足；政策整体效力的提升主要由政策发布数量驱动，政策反馈不足、政策措施较少和政策目标量化程度低是导致政策平均效力较低的主要原因。     

Measurement of membrane integrity in canine spermatozoa using a fluorescent computer‐assisted spermatozoal quantification method and manual counting after eosin‐nigrosin staining compared with manual counting after CFDA/PI staining

The aim of this study was to compare measurement of spermatozoal membrane status using computer‐assisted spermatozoal quantification (CASQ) and eosin‐nigrosin (EN) staining with manual counting after CFDA/PI staining. Analysis was performed on both fresh and thawed cryopreserved canine semen. Membrane‐disrupted spermatozoa (MDS) were counted using CASQ (n = 311) in an untreated sample and a completely membrane‐disrupted sample, and the percentage of membrane‐intact spermatozoa (MIS) calculated: (Total count ? Untreated sample count) ÷ Total count × 100. Spermatozoa were stained with a one‐step EN stain (n = 501), and then, at least 100 spermatozoa were manually examined under ×1,000 magnification and classified as MDS (stained with eosin) or MIS (non‐stained). Spermatozoa from the same samples were also stained with CFDA/PI, and then, at least 200 spermatozoa were manually examined under ×1,000 magnification and classified as MIS (completely stained by CFDA) or MDS. The percentage of progressively motile spermatozoa (PMS) was determined by both computer‐assisted semen analysis (CASA) and subjective methodologies, and the data were subsequently analysed to measure the agreement between the CASQ and EN methods with the CFDA/PI technique using Bland–Altman methodology. Pearson's correlation was measured between the MIS and PMS percentage samples and correlation coefficients compared. The mean MIS percentage was lower for CASQ and higher for EN than in CFDA/PI for all comparisons. The agreement of MIS percentage between CASQ and CFDA/PI was ?20.2% to 32.0%, and between EN and CFDA/PI was ?32.9% to 14.9%. In all methods, the MIS and PMS percentages were correlated (p < .001). Measurement of CFDA/PI appeared to be the most reliable and accurate method of determining MIS percentage in dogs. Further investigation is required to determine whether the CASQ technique can be improved. Eosin‐nigrosin staining also appeared to be unreliable at MIS <80% and overestimated the MIS percentage.     

Design and validation of a RT‐qPCR procedure for diagnosis and quantification of most types of infectious pancreatic necrosis virus using a single pair of degenerated primers

Infectious pancreatic necrosis virus (IPNV) is an important virus which affects the salmonid aquaculture industry worldwide; therefore, it is important to develop rapid and reliable methods of diagnosis to detect the disease at early stages. Nowadays, RT‐qPCR is replacing other methods because it provides additional information on the viral load, which is important to have a better understanding of the virus replication level and of the stage of the infection and its risk level. The main problem stems from the high diversity of this virus, which can compromise the reliability of the diagnosis. In this study, we have designed an RT‐qPCR procedure for diagnosis and quantification of IPNV based on a single pair of primers targeted to segment B. The procedure has been validated, in vitro and in vivo, testing two different types of standards against seven reference strains and 23 field isolates from different types. The procedure is reliable for the detection of any type, with a detection limit of 31 TCID₅₀ mL^?1, 50 pfu mL^?1 or 66 RNA copies mL^?1, depending on the standard. All the standard curves showed high reliability (R² > 0.95). The results support the high reliability of this new procedure for the diagnosis and quantification of IPNV.     

Development and evaluation of a loop-mediated isothermal amplification assay for rapid and simple detection of Flavobacterium psychrophilum

Flavobacterium psychrophilum is the causative agent of bacterial cold-water disease and rainbow trout fry syndrome of salmonids. The pathogen has been reported from all regions in the world involved in salmonid aquaculture, but also from natural fresh-water environments. We established a quantitative loop-mediated isothermal amplification of DNA (LAMP) method to estimate quantities of F. psychrophilum . LAMP primers were designed based on the sequence of the DNA topoisomerase IV subunit B gene, parE , of F. psychrophilum. parE LAMP exhibited a high specificity for the parE gene of F. psychrophilum but not for other related species. parE LAMP detected the gene in a wide range of concentrations from 2.0 × 10¹ to 2.0 × 10⁹ copies/reaction within 70 min and revealed a good correlation between threshold times and gene copy number.     

城市公园植物群落特征及空间量化评价研究

为了研究城市公园绿化的质量和水平,以青岛滨海为调查对象,对其各公园的植物群落特征和空间量化情况进行评价研究。结果表明,青岛滨海地区各城市公园中植物群落主要由乔木和灌木等小规格植物组成,空间量化分布较单一;大部分植物的胸径小于35 cm,植物胸径与冠幅和树高之间基本成正相关关系,不同植物群落冠层结构的空隙度和叶面积指数均存在一定差异性;植物群落配置可分为单排、双排及多排3种模式,不同模式下的植物生长存在差异性。     

基于PMC指数模型的我国乡村旅游政策量化评价

以我国乡村旅游相关政策为研究对象,通过关键词提取、文本挖掘、内容分析等方法,并参照已有学者相关研究,制定乡村旅游政策评价遴选指标,利用PMC指数模型对其中6项政策进行量化评价,以期为后续政策的出台提供一定启发,进一步完善乡村旅游的政策保障体系。结果表明,近年来国家层面的乡村旅游政策具有预测、建议、反馈性质不足,影响时效不长,对政治、科技领域涉及较少,激励方式普遍缺乏的特点。藉此提出相应建议。     

A highly sensitive,non‐invasive qPCR‐based strategy for direct quantification of Yersinia ruckeri in fish faeces

Finfish with asymptomatic Yersinia ruckeri infections pose a major risk as they can transmit the pathogen and cause clinical outbreaks in stock populations. Current tools have insufficient quantitative ability for accurately detecting the trace levels of Y. ruckeri typically associated with asymptomatic infection, necessitate invasive or lethal sampling, or require long processing times. This study presents a highly sensitive qPCR‐based method, targeting part of the Y. ruckeri 16S rRNA sequence, that is capable of detecting extremely low levels of Y. ruckeri in noninvasively collected faecal samples. Quantitative precision and accuracy of faecal sample analysis was consistent, despite the complexity of the faecal matrix. The assay demonstrated linearity over a six log‐wide dynamic range. Its limit of detection (LOD) and limit of quantification (LOQ) were 4 and 10 copies of the target sequence, respectively. Sensitivity of the assay was comparable to other qPCR‐based methods without requiring invasive or lethal sampling. Applicability as a screening strategy was tested using passively collected faecal samples. Asymptomatic Y. ruckeri infection was detected in all samples, although none of the fish exhibited overt infection. This method will be beneficial for finfish disease management if developed further as a noninvasive, screening tool against asymptomatic Y. ruckeri infection.     

利用双标准曲线法检测刺萼龙葵 SrDOG1基因的表达

双标准曲线法是基因表达定量研究中应用较广的一种相对定量检测方法。本研究结合绝对定量的原理,对传统双标准曲线法进行了改进。以刺萼龙葵延迟萌发基因DELAY OF GERMINATION 1(DOG1)的表达检测为例,选择β-actin为内参基因,分别将目的基因和内参基因片段插入pEASY-Blunt Zero载体,制作标准质粒。提取冷藏或常温储藏种子的RNA进行荧光扩增,同时将标准质粒梯度稀释液作为模板构建标准曲线,以此计算SrDOG1的相对表达量。结果表明,双标准曲线法能够灵敏地检测SrDOG1基因的差异表达,发现冷藏种子中SrDOG1基因的表达量较常温储藏显著增高。双标准曲线法检测结果稳定,重现性好,数据处理简单,适用于多种条件下基因表达水平的比较,为进一步系统研究刺萼龙葵DOG1基因的表达特性和基因功能奠定了基础。     

Introgression of antioxidant activity into cassava (Manihot esculenta C.): an effective technique for extending fresh storage roots shelf life

Physiological postharvest deterioration (PPD) of cassava is the main constraint affecting its nutritional and economical values. PPD is induced by wounds when detaching storage roots from mother plant during harvesting. It is accelerated by the reactive oxygen species (ROS) such as oxygen ion (O₂) and peroxide (O₂)^?2. The carotenoid content and its antioxidant property can help in extending shelf life of cassava storage roots. The primary mode of action of carotenoids as antioxidant is to quench singlet oxygen. Cassava breeding was reported to successfully introgress and improve carotenoid content into cassava. The two types of phytoene synthase (PSY) enzymes (PSY1 and PSY2) are key regulators of carotenoids accumulation in cassava. Carotenoids formation and accumulation in cassava storage roots are induced by a single nucleotide polymorphism in PSY2 which causes a non‐conservative amino acid exchange. This single nucleotide polymorphism in PSY gene is co‐segregated with β‐carotene in cassava storage roots, a phenomenon that could help to unravel the mechanism of introgression of carotenoids into cassava. This article investigates breeding feasibility for improving quality of cassava landraces in developing countries.