Rates of inbreeding and genetic diversity in Iranian Holstein Cattle

The accumulation of inbreeding and the loss of genetic diversity is a potential problem in Holstein dairy cattle. The goal of this study was to estimate inbreeding levels and other measures of genetic diversity, using pedigree information from Iranian Holstein cattle. Edited pedigree included 1 048 572 animals. The average number of discrete generation equivalents and pedigree completeness index reached 13.4 and 90%, respectively. The rate of inbreeding was 0.3% per year. Effective number of founders, founder genomes, non‐founders and ancestors of animals born between 2003 and 2011 were 503, 15.6, 16.1 and 25.7, respectively. It was proven that the unequal founder contributions as well as bottlenecks and genetic drift were important reasons for the loss of genetic diversity in the population. The top 10 ancestors with the highest marginal genetic contributions to animals born between 2003 and 2011 and with the highest contributions to inbreeding were 48.20% and 63.94%, respectively. Analyses revealed that the most important cause of genetic diversity loss was genetic drift accumulated over non‐founder generations, which occurred due to small effective population size. Therefore, it seems that managing selection and mating decisions are controlling future co‐ancestry and inbreeding, which would lead to better handling of the effective population size.     

Observations on the reproductive performance of three mouth-brooding tilapia species in low-salinity underground water

The reproductive performance and seed production of three mouth‐brooding tilapia species, Oreochromis spilurus (Günther), Oreochromis aureus (Steindachner) and Taiwanese red tilapia hybrid, were compared in low‐salinity underground water (3–5 g L^?1) to select species with the highest reproductive rate. Two‐year‐old males and females having average body weights of 454 and 259 g, respectively, were stocked in 2‐m³ fibreglass breeding tanks (two tanks per species) at 1:3 male to female sex ratio and at average density of three fish m^?2. Seeds (unhatched eggs; yolk‐sac fry and the swim‐up fry) were collected weekly for 112 days. The results showed O. spilurus to have significantly higher (P<0.05) mean spawning parameters expressed as total seed tank^?1 (84 154), seed kg female^?1 day^?1 (284), seed m^?2 day^?1 (190.3) and seed female^?1 day^?1 (76.3), than O. aureus and red tilapia. Monthly seed production in O. spilurus and red tilapia gradually increased from May, peaked in July and declined in August, while in O. aureus, it continued to decrease from May to August. In this study, the observed production levels of seed in O. spilurus were among the highest levels reported for tilapia; therefore, O. spilurus could be selected as a potential candidate for mass seed production in commercial tilapia hatcheries.     

Substrate concentration affects the in vitro metabolism of 17-hydroxyprogesterone by ovaries of the carp,Cyprinus carpio

Carp ovarian tissue was incubated with ³H-17-hydroxyprogesterone in the presence of 0, 0.1, 1, 10, and 100 μg ml⁻¹ unlabeled 17-hydroxyprogesterone. The pattern of metabolites formed showed a marked variation with substrate concentration. Formation of glucuronide and sulphate conjugates was important only at low substrate concentration. At high substrate concentration (10 and 100 μg ml⁻¹) 17,20α-dihydroxy-4-pregnen-3-one was the major metabolite, but at intermediate concentrations polar 7α-hydroxypregnanetetrols predominated. The results support the hypothesis that at low substrate concentrations conjugating, 5α-reducing and 7α-hydroxylating enzymes, of high activity but low capacity, act as scavengers to deactivate any steroids formed during the relatively low pituitary gonadotrophin secretions which are necessary for oocyte development, but that during the prespawning gonadotrophin surge when high levels of substrate are present these enzymes are saturated and 17,20α-dihydroxy-4-pregnen-3-one (17,20αP) becomes the major ovarian steroid. The possible role of 17,20αP during oocyte final maturation requires further examination.     

Marine Sponge Derived Natural Products between 2001 and 2010: Trends and Opportunities for Discovery of Bioactives

Marine sponges belonging to the phylum Porifera (Metazoa), evolutionarily the oldest animals are the single best source of marine natural products. The present review presents a comprehensive overview of the source, taxonomy, country of origin or geographical position, chemical class, and biological activity of sponge-derived new natural products discovered between 2001 and 2010. The data has been analyzed with a view to gaining an outlook on the future trends and opportunities in the search for new compounds and their sources from marine sponges.     

A new look at the genus Crocus L. phylogeny and speciation: Insight from molecular data and chromosome geography

Genetic Resources and Crop Evolution - The genus Crocus of the family Iridaceae is a monophyletic genus with over 100 species. Due to the high degree of hybridization and the changes in the number...     

Assessment of molecular genetic diversity of 384 chickpea genotypes and development of core set of 192 genotypes for chickpea improvement programs

Genetic Resources and Crop Evolution - Cicer arietinum L. (chickpea) is one of the most significant legume crops domesticated in the Fertile Crescent. This study was aimed to characterize a diverse...     

A bioinformatic insight into the genetic diversity within pomegranate cultivars: from nuclear to chloroplast genes

Genetic Resources and Crop Evolution - The pomegranate (Punica granatum L.) is an ancient fruit plant which has been consumed for its nutritional value and medicinal properties by mankind. Several...     

Reduced tillage with residue retention improves soil labile carbon pools and carbon lability and management indices in a seven-year trial with wheat-mung bean-rice rotation

Soil total organic carbon (TOC) is a composite indicator of soil quality with implications for crop production and the regulation of soil ecosystem services. Research reports on the dynamics of TOC as a consequence of soil management practices in subtropical climatic conditions, where microbial carbon (C) loss is high, are very limited. The objective of our study was to evaluate the impact of seven years of continuous tillage and residue management on soil TOC dynamics (quantitative and qualitative) with respect to lability and stratification under an annual wheat-mung bean-rice cropping sequence. Composite soil samples were collected at 0-15 and 15-30 cm depths from a three-replicate split-plot experiment with tillage treatment as the main plots and crop residue levels as the sub-plots. The tillage treatments included conventional tillage (CT) and strip tillage (ST). Residue levels were high residue level (HR), 30% of the plant height, and low residue level (LR), 15%. In addition to TOC, soil samples were analyzed for particulate organic C (POC), permanganate oxidizable C (POXC), basal respiration (BR), specific maintenance respiration rate (qCO₂), microbial biomass C (MBC), potentially mineralizable C (PMC), and TOC lability and management indices. The ST treatment significantly increased the TOC and labile C pools at both depths compared with the CT treatment, with the effect being more pronounced in the surface layer. The HR treatment increased TOC and labile C pools compared with the LR treatment. The ST + HR treatment showed significant increases in MBC, metabolic quotient (qR), C pool index (CPI), C lability index (CL_I), and C management index (CMI), indicating improved and efficient soil biological activities in such systems compared with the CT treatment. Similarly, the stratification values, a measure of soil quality improvement, for POC and MBC were > 2, indicating improved soil quality in the ST + HR treatment compared with the CT treatment. The ST + HR treatment not only significantly increased the contents of TOC pools, but also their stocks. The CMI was correlated with qCO₂, BR, and MBC, suggesting that these are sensitive indicators of early changes in TOC. The qCO₂ was significantly higher in the CT + LR treatment and negatively correlated with MBC and CMI, indicating a biologically stressed soil condition in this treatment. Our findings highlight that medium-term reduced tillage with HR management has profound consequences on soil TOC quality and dynamics as mediated by alterations in labile C pools.     

Methanotrophy-driven accumulation of organic carbon in four paddy soils of Bangladesh

Biological methane oxidation is a crucial process in the global carbon cycle that reduces methane emissions from paddy fields and natural wetlands into the atmosphere.However,soil organic carbon accumulation associated with microbial methane oxidation is poorly understood.Therefore,to investigate methane-derived carbon incorporation into soil organic matter,paddy soils originated from different parent materials(Inceptisol,Entisol,and Alfisol) were collected after rice harvesting from four major rice-producing regions in Bangladesh.Following microcosm incubation with 5%(volume/volume)¹³ CH₄,soil¹³ C-atom abundances significantly increased from background level of 1.08% to 1.88%–2.78%,leading to a net methane-derived accumulation of soil organic carbon ranging from 120 to 307 mg kg^-1.Approximately 23.6%–60.0% of the methane consumed was converted to soil organic carbon during microbial methane oxidation.The phylogeny of¹³ C-labeled pmoA(enconding the alpha subunit of the particulate methane monooxygenase) and 16 S rRNA genes further revealed that canonical α(type II) and γ(type I) Proteobacteria were active methane oxidizers.Members within the Methylobacter-and Methylosarcina-affiliated type Ia lineages dominated active methane-oxidizing communities that were responsible for the majority of methane-derived carbon accumulation in all three paddy soils,while Methylocystis-affiliated type IIa lineage was the key contributor in one paddy soil of Inceptisol origin.These results suggest that methanotroph-mediated synthesis of biomass plays an important role in soil organic matter accumulation.This study thus supports the concept that methanotrophs not only consume the greenhouse gas methane but also serve as a key biotic factor in maintaining soil fertility.     

HYDRUS simulations of the effects of dual-drip subsurface irrigation and a physical barrier on water movement and solute transport in soils

Subsurface drip irrigation systems, compared to other irrigation systems, enhance the delivery of water and nutrients directly into the root zone. However, in light-textured soils, certain quantities of water may percolate below the root zone due to the subsurface position of drip lines and/or poor management of irrigation systems. The main objective of this paper is to evaluate three technologies to enhance a spatial distribution of water and solutes in the root zone and to limit downward leaching. The three technologies include (a) a physical barrier, (b) a dual-drip system with concurrent irrigation, and (c) a dual-drip system with sequential irrigation. To achieve this objective, we performed computer simulations using the HYDRUS (2D/3D) software for both bare and vegetated soils. The results indicate that the physical barrier is more efficient than dual-drip systems in enhancing the water distribution in the root zone while preventing downward leaching. On the other hand, the dual-drip system improves water distribution in sandy soils. Additionally, the dual-drip system with sequential irrigation, followed by the dual-drip system with concurrent irrigation, is the most efficient in limiting downward leaching of solutes.