A robust set of black walnut microsatellites for parentage and clonal identification

We describe the development of a robust and powerful suite of 12 microsatellite marker loci for use in genetic investigations of black walnut and related species. These 12 loci were chosen from a set of 17 candidate loci used to genotype 222 trees sampled from a 38-year-old black walnut progeny test. The 222 genotypes represent a sampling from the broad geographic distribution of the species. Analysis of the samples using the 12 loci revealed an average expected heterozygosity of 0.83, a combined probability of identity of 3×10⁻¹⁹, and a combined probability of exclusion for paternity analysis of >0.999. The 222 genotyped trees from the progeny test comprised 39 open-pollinated families, 29 of which (having at least five sampled progeny) were used to estimate the outcrossing rate for the progeny trial. The same 29 families were used to construct a Neighbor-Joining dendrogram based upon allele sharing between individuals. The multilocus estimate of the outcrossing rate was 100% (standard error of zero), higher than the 90% level found in previous studies at the embryo stage, suggesting that both artificial and natural selection against selfs may have occurred over the 38-year lifespan of the progeny trial. In the Neighbor-Joining dendrogram, the majority of the putative siblings grouped together in 21 out of the 29 families, showing that the microsatellites were able to discern most of the family structure in the dataset. Our results indicate that errors were sometimes committed during the establishment of the progeny test. This set of microsatellite loci clearly provides a powerful tool for future applications in black walnut.     

Linking herbivore monitoring with interpolation to map regional risk of pest species

Journal of Pest Science - Long-term monitoring networks that generate data on pest abundance are the foundation of integrated pest management. Monitoring can estimate local risk from pests and...     

Assessing common bottlenose dolphin (Tursiops truncatus) population structure in Mississippi Sound and coastal waters of the north central Gulf of Mexico

1. Population structure of highly mobile marine organisms can be complex and difficult to study, but it is important to understand how populations partition themselves within their environment for accurate assessment of both natural and anthropogenic impacts and successful management. The 2010 Deepwater Horizon oil spill negatively impacted common bottlenose dolphins (Tursiops truncatus) within Mississippi Sound and the surrounding north central Gulf of Mexico (GOMx); however, little was known about their underlying population structure in these waters. Thus, it was unclear how many demographically independent populations were affected by the spill.
2. Common bottlenose dolphin samples were collected throughout inshore waters of Mississippi Sound and coastal waters of the north-central GOMx. Mitochondrial DNA control region sequence data and 19 nuclear microsatellite loci were analysed to determine how many populations are present and characterize their range throughout these waters.
3. Bayesian clustering and migration analyses identified two genetically distinct and demographically independent populations: one predominantly inhabiting Mississippi Sound and adjacent coastal waters, and a second population extending generally from offshore of Mobile Bay, Alabama, east along the Florida Panhandle. Neither of these populations align with the currently delineated management stocks previously used to estimate impacts from the oil spill on common bottlenose dolphins in this portion of the GOMx.
4. These results suggest that revisions may be necessary so that management stocks accurately represent the demographically independent populations present in these waters. Furthermore, better comprehension of underlying population structure will enhance impact assessments on common bottlenose dolphins and provide more appropriate baseline data to support future restoration and conservation objectives.

     

A weight‐of‐evidence approach for defining thermal sensitivity in a federally endangered species

1. Managing for threatened and endangered species under changing environmental conditions is a challenge faced by resource managers worldwide. Lack of basic knowledge of the biology and habitat requirements of these species can contribute to this difficulty but is exacerbated by the limitations of working with rare species (i.e. few individuals) or unrefined and non‐lethal methods for evaluating stress.
2. A weight‐of‐evidence approach was used to evaluate the thermal biology of the federally endangered dwarf wedgemussel (Alasmidonta heterodon), using cumulative results from multiple experimental assessments, co‐occurring species, and their host fish to begin defining the thermal limits and optimal conditions for the species.
3. Results suggest that dwarf wedgemussel and its host fish are thermally sensitive species compared with other Atlantic‐slope mussels, with a lower critical thermal maximum (CTM) and the selection of reduced temperatures during choice experiments.
4. Physiological studies resulted in a lack of statistical significance, primarily owing to low power, which was a function of sample size – an unavoidable problem when studying rare species. Given these limitations, thermal choice and CTM may be more useful end points than physiological processes such as clearance and respiration rates when dealing with sample‐size limitations.
5. These results suggest that management strategies that avoid exposing dwarf wedgemussel and its thermally sensitive host fish to extreme temperatures could be important for species conservation.

     

Reduced blood flow to peripheral and core body tissues in sheep and cattle induced by endophyte-infected tall fescue

Four wethers and 14 steers (environmentally heat stressed, 32 degrees C, 60% relative humidity) were evaluated for changes in blood flow induced by endophyte-infected tall fescue. Concentration of the ergopeptide ergovaline was used as an indicator of diet toxicity due to the endophytic fungus Acremonium coenophialum. Blood flow to specific tissues was measured using radiolabeled microspheres. Wethers received one of two dietary treatments for 30 d before determination of tissue blood flow: 1) a low-endophyte diet (less than .05 ppm ergovaline) or 2) a high-endophyte (1.18 ppm ergovaline) diet. Blood flows to the adrenal glands and skin covering the inner hind leg were less (P less than .10) in wethers consuming the high-endophyte diet than in those consuming the low-endophyte diet. Tissue blood flows in steers were determined on two occasions: 1) after steers had received a low- (less than .01 ppm ergovaline) or high-endophyte (.52 ppm ergovaline) fescue diet for 14 d and 2) 8 d after steers had been switched to a common, fescue-free diet. Blood flows to skin covering the ribs, cerebellum of the brain, duodenum, and colon were less (P less than .10) in steers consuming the high-endophyte diet. However, 8 d after consuming fescue-free diets, steers that had previously consumed the high-endophyte diet had greater (P = .08) blood flow to the coronary bands of the front hooves than steers that had consumed the low-endophyte diet. Blood flows to all other tissues were similar between treatments. We inferred from these experiments that the toxin(s) associated with endophyte-infected tall fescue caused decreased blood flow to peripheral and core body tissues and that this effect was abated within 8 d of removing the toxin(s).     

Self-compatibility and heterosis in white clover (Trifolium repens L.)

Inbred lines of white clover (Trifolium repens L.) have been produced utilising the rare self-fertility (Sf) allele. Twenty-two lines of four distinct groups have been maintained through five generations of selfing by single seed descent. Fourteen lines were used in crosses to produce F¹s. Both parents and hybrids were analysed for a range of morphological characters. Positive heterosis for dry matter production was observed in half the hybrids. No other trait showed significant heterosis. The degree of heterosis appears to be related to the extent of variation in morphological characters between the parental lines, some combinations of lines yielding heterotic hybrids in all cases, others in none. The majority of the F¹ hybrids are superior in terms of dry matter production to eight control varieties. This revised version was published online in July 2006 with corrections to the Cover Date.     

Grain-yield characteristics of oat lines surviving uniform and shuttle selection strategies

Summary Four selection strategies were used on four sets of oat lines to select for grain yield. Two of these used uniform environments whereby sequential selection of the high-yielding lines occurred in continuous high- or continuous low-productivity environments. These are referred to as high and low uniform selection strategies, respectively. The other two selection strategies were conducted by sequential selection of the high-yielding lines in alternating high- and low-productivity environments. They are referred to as high and low shuttle selection strategies, respectively, with high and low designating the productivity of the first environment in the sequence. After three or four cycles of selection, the surviving lines and a random sample from each set were evaluated for mean grain yield, grain yield response to improving environments, and stability of grain yield, in a range of environments typical of oat production on Iowa farms.Grain yield and regression response for all selection strategies, when calculated across all sets of lines, were significantly greater than corresponding values for random samples. Stability was unchanged. The uniform-high and uniform-low strategies gave the greatest and the smallest gains in mean grain yield, respectively, with the shuttle strategies giving intermediate gains. Shuttle selection in predominantly high-productivity environments increased grain yield more than shuttle selection in predominantly low-productivity environments. The uniform-strategy followed by the shuttle-high strategy identified entries with superior performance in high productivity environments. Increased gain in mean grain yield across all environments was associated with increased number of selection cycles conducted in high-productivity environments.Journal Paper No. J-15252 of the Iowa Agric. and Home Econ. Exp. Stn., Ames, Iowa 50011, USA. Project No. 2447.     

Effects of human activity on the foraging behavior of sanderlings Calidris alba

Urbanization and coastal development has dramatically reduced the beach habitat available for foraging shorebirds worldwide. This study tested the general hypothesis that recreational use of shorebird foraging areas adversely affects the foraging behavior of sanderlings Calidris alba. Observations conducted on two central California beaches from January through May and September through December of 1999 showed that number and activity of people significantly reduced the amount of time sanderlings spent foraging. Although the sample size was low, the most significant negative factor was the presence of free running dogs on the beach. The experimentally determined minimal approach distance did not vary significantly with the type of human activities tested. Based on these results, policy recommendations for minimizing the impact of human beach activities on foraging shorebirds include: (1) people maintain a minimum distance of 30 m from areas where shorebirds concentrate and (2) strict enforcement of leash laws.