Long-range interactions within a nonnative protein

Protein folding and unfolding are coupled to a range of biological phenomena, from the regulation of cellular activity to the onset of neurodegenerative diseases. Defining the nature of the conformations sampled in nonnative proteins is crucial for understanding the origins of such phenomena. We have used a combination of nuclear magnetic resonance (NMR) spectroscopy and site-directed mutagenesis to study unfolded states of the protein lysozyme. Extensive clusters of hydrophobic structure exist within the wild-type protein even under strongly denaturing conditions. These clusters involve distinct regions of the sequence but are all disrupted by a single point mutation that replaced residue Trp62 with Gly located at the interface of the two major structural domains in the native state. Thus, nativelike structure in the denatured protein is stabilized by the involvement of Trp62 in nonnative and long-range interactions.     

Community-level impacts induced by introduced largemouth bass and bluegill in farm ponds in Japan

Largemouth bass Micropterus salmoides and bluegill Lepomis macrochirus have been introduced into many countries and have become cosmopolitan exotic species. However, only a few studies show their impact on introduced communities. To investigate their impact, we performed natural snapshot experiments in 15 farm ponds in Saitama prefecture, eastern Japan. We selected 10 and 5 small ponds in similar environmental conditions, but with and without exotics, respectively. The numbers of fish, crustaceans, and nymphal odonates were smaller in ponds where exotics were found and some species were considered to be locally extinct in several ponds. On the other hand, the numbers of benthic organisms, i.e. tadpoles, chironomids, chaoborids, and Oligochaeta were more abundant in ponds with exotics. These two groups of organisms were separated clearly on the first axis of DCA, which indicats that this difference was mainly induced by bass predation. This result suggests a trophic cascade in which top-down effects induced by exotics propagated to fish, crustaceans, and nymphal odonates directly and to some benthic organisms indirectly. Therefore, when one is to conserve native organisms, attention should be paid not only to direct negative effects, but also to indirect effects propagating to various trophic levels. Because farm ponds are typical Japanese small lentic systems having rich biodiversities and bass and bluegill have been shown to change farm pond communities widely, conservational treatments including eradication of exotic fish should be conducted immediately.     

Improvement of the functional properties of sucrose stearate by phosphorylation

Phosphorylated sucrose stearate (SE-P) was prepared by dry-heating sucrose stearate (SE) with metaphosphoric acid. The main product was deduced to be a monophosphosucrose monostearate by chemical analysis and mass spectrometry. SE-P exhibited remarkably higher solubility and emulsifying properties than SE, especially in the acidic region and in the presence of NaCl, and SE-P bound Ca2+ at a 1:1 molar ratio (SE-P/Ca2+). SE-P markedly reduced the viscosity of potato starch paste and inhibited retrogradation, whereas SE did not reduce it so much. It is thus expected that phosphorylation would be an appropriate method for improving the functional properties of SE and that SE-P could be used as a novel emulsifier and modifier with Ca2+-binding ability for starchy foods.     

紫外线(UV-B)照射对水稻产量及稻米蛋白质含量的影响

以抗紫外线UV-B的日本粳稻品种Sasanishiki为材料,1999年和2000年在大田条件下,探讨了不同生育时期的UV-B处理对水稻产量、糙米的大小及蛋白质含量的影响.结果表明,营养生长期(移栽至幼穗分化)、生殖生长期(幼穗分化至抽穗)及抽穗成熟期的UV-B处理对Sasanishiki的产量及其构成因素的影响不显著;生殖生长期(幼穗分化至抽穗)与     

Influence of feeding regime on fatty acid composition in young red-spotted grouper Epinephelus akaara

ABSTRACT:   Young red-spotted grouper Epinephelus akaara with an average total length of 3.4 cm were divided into five groups in floating net-cages, and reared under satiated conditions with different feeding frequencies (0.5, 1, 2, 4 and 8 times per day) for 40 days. Total food intake increased with feeding frequency. Feeding four times per day resulted in the highest growth and food conversion efficiency. Total lipid accumulation in the muscle, liver and intraperitoneal fat body (IPF) increased with feeding frequency. Red-spotted grouper were found to contain a high proportion of docosahexaenoic acid (DHA) in the muscle. Fish fed 0.5 times per day were characterized as having a high proportion of DHA in triglycerides (TG) in muscle (80%), liver (69%) and IPF (18%). Increasing saturated fatty acids and a relative reduction of DHA were observed in the muscle TG as the feeding frequency increased. Frequent feeding accelerated the accumulation of eicosapentaenoic acid and saturated acids in the liver and IPF. Low saturated acids and a subsidiary proportional increase in DHA were the result of the low lipid reserves. A possible role for DHA and saturated acids are discussed with regard to lipid reserves.     

Quantification of lipophilic toxins associated with diarrhetic shellfish poisoning in Japanese bivalves by liquid chromatography-mass spectrometry and comparison with mouse bioassay

ABSTRACT:   Quantification of lipophilic toxins in bivalves associated with diarrhetic shellfish poisoning was investigated by liquid chromatography–mass spectrometry (LC–MS). Using a C8-silica reversed phase column and a mobile phase of aqueous acetonitrile containing 2 mM ammonium formate and 50 mM formic acid, okadaic acid, dinophysistoxin-1, 7- O -palmitoyldinophysistoxin-1, pectenotoxin-1, pectenotoxin-2, pectenotoxin-6, pectenotoxin-2 seco-acid, yessotoxin, and 45-hydroxyyessotoxin in bivalves were quantified by LC–MS in the negative mode. When the crude 90% methanol extracts were analyzed by LC–MS, there were no significant effects from bivalve matrices on the quantification of toxins. More than 200 bivalve samples collected from various production areas in Japan were analyzed by LC–MS. Pectenotoxin-6 and dinophysistoxin-1 were the dominant toxins in scallops and mussels, respectively. Yessotoxin and 45-hydroxyyessotoxin were also detected in both species. Comparison of the quantitative results obtained for these bivalve samples between LC–MS and mouse bioassay indicates that LC–MS is suitable for routine monitoring of lipophilic toxins in Japanese bivalves.     

Size selectivity of escape holes in conger tube traps for inshore hagfish <Emphasis Type="Italic">Eptatretus burgeri</Emphasis> and white-spotted conger <Emphasis Type="Italic">Conger myriaster</Emphasis> in Tokyo Bay

ABSTRACT:   In Tokyo Bay, conger tube-trap fishers voluntarily deployed escape holes of at least 13 mm diameter to reduce the by-catch of young conger smaller than the marketable size of 35 cm total length. Comparative fishing experiments in Tokyo Bay were carried out using tube traps with seven hole diameters (3, 9, 13.5, 14, 15, 17, and 19 mm), to obtain the size-selectivity of the escape-hole size for inshore hagfish Eptatretus burgeri and white-spotted conger Conger myriaster . On the assumption of the geometrical similarity in the combination of body g and hole perimeter m at a given retention probability, a single master curve s ( R ) = exp(−13.52 + 11.31 R )/(1 + exp [−13.52 + 11.31 R ]) was estimated for the two species in terms of relative R  =  g / m using the Share Each LEngth's Catch Total (SELECT) process based on a multinomial distribution. Almost all conger and hagfish with a girth equivalent to the hole perimeter were able to pass through the hole. Thus, the two species have a high ability to escape through a narrow space by squeezing the body through the hole in the rigid PVC tube. Optimum escape-hole size is discussed from several objectives for conger tube-trap fishery management, e.g. reduction of hagfish by-catch. This study also specifies the conditions for pooling data when fishing experiments using more than two fishing gears are replicated.