Application of inorganic element ratios to chemometrics for determination of the geographic origin of welsh onions

The composition of concentration ratios of 19 inorganic elements to Mg (hereinafter referred to as 19-element/Mg composition) was applied to chemometric techniques to determine the geographic origin (Japan or China) of Welsh onions (Allium fistulosum L.). Using a composition of element ratios has the advantage of simplified sample preparation, and it was possible to determine the geographic origin of a Welsh onion within 2 days. The classical technique based on 20 element concentrations was also used along with the new simpler one based on 19 elements/Mg in order to validate the new technique. Twenty elements, Na, P, K, Ca, Mg, Mn, Fe, Cu, Zn, Sr, Ba, Co, Ni, Rb, Mo, Cd, Cs, La, Ce, and Tl, in 244 Welsh onion samples were analyzed by flame atomic absorption spectroscopy, inductively coupled plasma atomic emission spectrometry, and inductively coupled plasma mass spectrometry. Linear discriminant analysis (LDA) on 20-element concentrations and 19-element/Mg composition was applied to these analytical data, and soft independent modeling of class analogy (SIMCA) on 19-element/Mg composition was applied to these analytical data. The results showed that techniques based on 19-element/Mg composition were effective. LDA, based on 19-element/Mg composition for classification of samples from Japan and from Shandong, Shanghai, and Fujian in China, classified 101 samples used for modeling 97% correctly and predicted another 119 samples excluding 24 nonauthentic samples 93% correctly. In discriminations by 10 times of SIMCA based on 19-element/Mg composition modeled using 101 samples, 220 samples from known production areas including samples used for modeling and excluding 24 nonauthentic samples were predicted 92% correctly.     

Comparison of Acid Neutralization by Chemical Weathering Between Acidified and Non-Acidified Watersheds

In eastern Asia, emission of acid materials and acid depositionwill increase with industrialization in future, and freshwatersin Japan are likely to become acidified. In this article, anevaluation method for acid-neutralization by chemical weatheringwas applied to one acidified watershed in U.S.A. and three non-acidified watersheds in Japan, and effect of hydrogeochemicalproperties on chemical weathering and stream water chemistry wasdiscussed. In three non-acidified watersheds in Japan, arealchemical weathering rates of primary minerals are much largerthan those observed in U.S.A. Watersheds in both countries showno difference in mineralogy, while the soil thickness (weatheredprofile) in watersheds is contrastive between acidified and non-acidified watersheds. Therefore, it is concluded that acidity is neutralized by chemical weathering of primary minerals in thick weathered profiles in Japanese watershed. In non-acidified Japanese watersheds which has the smallest acid-neutralization capacity in three observed watersheds, stream water will not acidify even if the acid deposition increases asmuch as two or three times the observed level. From the viewpoint of Japan's nationwide streamwater chemistry, more than 90% of the watersheds have far greater acid-neutralization capacities than this watershed, and will not be acidified even in cases where the acid deposition increase as much as two or three fold.     

Polymorphism of rRNA gene loci in the dog

We examined the number of ribosomal gene (rDNA) loci in the metaphase spreads of 54 dogs by FISH method. We found that in 16 dogs (30%) one or two loci were missing. The total number of rDNA loci was varied from 5 to 7 in males and from 4 to 6 in females. As the male dog consistently bears the rDNA on the Y chromosome, the polymorphism of the rDNA locus was ascribed to the absence of autosomal rDNA loci. Indeed, the frequency of polymorphism is almost equivalent in both sexes in the beagle. In one female beagle dog, remarkable intense fluorescence signals were observed at the four autosomal loci, indicating the in situ amplification of rDNA.     

Host-tree conditions affecting the oviposition activities of the woodwasp,Sirex nitobei Matsumura (hymenoptera: Siricidae)

Experiments were conducted to elucidate how the oviposition activities ofSirex nitobei Matsumura could be affected by different conditions of the host trees, using logs from felled healthy trees and the dead and living trees ofPinus densiflora Sieb. et Zucc. According to days elapsed after tree-felling, the proportions of oviposition defined as the proportion of eggs laid to the potential fecundity of a female during her lifetime, could be divided arbitrarily into three groups. The proportions of oviposition on the logs within 0–3 days after felling,i.e fresh logs, varied greatly from log to log, and about half of female adults showed proportions of oviposition under 50% (mean ±SD: 39±32%). However, all the females that oviposited on the logs 4–24 days after felling,i.e. intermediate logs, invariably showed proportions of oviposition over 50% (88±1.5%). On the other hand, proportions of oviposition in most of the females that oviposited on the logs over 25 days after felling,i.e. old logs, were less than 50% (26±17%). The proportions of oviposition were significantly different between intermediate logs and old logs. The mean proportion of oviposition on living trees and that for dead trees were 45 and 58%, respectively. Thus,S. nitobei in the field would exhibit its preference for weakened trees ofP. densiflora as oviposition sites, as it did for the logs 4–24 days after felling in this study.     

Pseudodynamic tests and earthquake response analysis of timber structures I: plywood-sheathed conventional wooden walls with opening

Pseudodynamic (PSD) lateral loading tests were conducted on conventional post and beam timber frames with plywood-sheathed shear walls to validate the dynamic model of wall panels, each with an opening of a different configuration. The lateral forces were applied step by step at the top of the wooden frames by the computer-controlled actuator, and the displacement response for the next step was computed on the basis of the input accelerogram of the 1940 El Centro earthquake scaled up to 0.4g. The test results were compared with those of the lumped mass time-history earthquake response analysis using the hysteresis model with pinching. The results of the dynamic analysis with this global model consisting of the envelope curves, unloading and reloading with pinching agreed well with the experimental results of the PSD tests of this type of earthquake record. Some parametric studies may be necessary, however, to validate the model with different earthquake records. The hysteretical parameters obtained in this study showed similar values for each of the wall panels with different opening configurations. This makes it possible to use the model and parameters for the plywood-sheathed shear walls to estimate the dynamic behavior of entire structures without conducting expensive PSD tests or shaking table tests.     

Rapid genotyping with DNA micro-arrays for high-density linkage mapping and QTL mapping in common buckwheat (Fagopyrum esculentum Moench)

For genetic studies and genomics-assisted breeding, particularly of minor crops, a genotyping system that does not require a priori genomic information is preferable. Here, we demonstrated the potential of a novel array-based genotyping system for the rapid construction of high-density linkage map and quantitative trait loci (QTL) mapping. By using the system, we successfully constructed an accurate, high-density linkage map for common buckwheat (Fagopyrum esculentum Moench); the map was composed of 756 loci and included 8,884 markers. The number of linkage groups converged to eight, which is the basic number of chromosomes in common buckwheat. The sizes of the linkage groups of the P1 and P2 maps were 773.8 and 800.4 cM, respectively. The average interval between adjacent loci was 2.13 cM. The linkage map constructed here will be useful for the analysis of other common buckwheat populations. We also performed QTL mapping for main stem length and detected four QTL. It took 37 days to process 178 samples from DNA extraction to genotyping, indicating the system enables genotyping of genome-wide markers for a few hundred buckwheat plants before the plants mature. The novel system will be useful for genomics-assisted breeding in minor crops without a priori genomic information.     

Angiotensin I Converting Enzyme Inhibitory Peptides Derived from Phycobiliproteins of Dulse Palmaria palmata

We examined the inhibitory activity of angiotensin I converting enzyme (ACE) in protein hydrolysates from dulse, Palmaria palmata. The proteins extracted from dulse were mainly composed of phycoerythrin (PE) followed by phycocyanin (PC) and allophycocyanin (APC). The dulse proteins showed slight ACE inhibitory activity, whereas the inhibitory activity was extremely enhanced by thermolysin hydrolysis. The ACE inhibitory activity of hydrolysates was hardly affected by additional pepsin, trypsin and chymotrypsin treatments. Nine ACE inhibitory peptides (YRD, AGGEY, VYRT, VDHY, IKGHY, LKNPG, LDY, LRY, FEQDWAS) were isolated from the hydrolysates by reversed-phase high-performance liquid chromatography (HPLC), and it was demonstrated that the synthetic peptide LRY (IC₅₀: 0.044 μmol) has remarkably high ACE inhibitory activity. Then, we investigated the structural properties of dulse phycobiliproteins to discuss the origin of dulse ACE inhibitory peptides. Each dulse phycobiliprotein possesses α-subunit (Mw: 17,477–17,638) and β-subunit (Mw: 17,455–18,407). The sequences of YRD, AGGEY, VYRT, VDHY, LKNPG and LDY were detected in the primary structure of PE α-subunit, and the LDY also exists in the APC α- and β-subunits. In addition, the LRY sequence was found in the β-subunits of PE, PC and APC. From these results, it was suggested that the dulse ACE inhibitory peptides were derived from phycobiliproteins, especially PE. To make sure the deduction, we carried out additional experiment by using recombinant PE. We expressed the recombinant α- and β-subunits of PE (rPEα and rPEβ, respectively), and then prepared their peptides by thermolysin hydrolysis. As a result, these peptides showed high ACE inhibitory activities (rPEα: 94.4%; rPEβ: 87.0%). Therefore, we concluded that the original proteins of dulse ACE inhibitory peptides were phycobiliproteins.     

Waxy endosperm accompanies increased fat and saccharide contents in bread wheat (Triticum aestivum L.) grain

The contents of fat, starch, pentosan, fructan, β-glucan and several mono- and oligosaccharides in grain were evaluated to find out the possible effects of the Wx-D1 gene of bread wheat using two sets of near-isogenic waxy and non-waxy lines and two low-amylose mutant lines with a common genetic background of Kanto 107. These materials have two non-functional Wx-A1b and Wx-B1b alleles in common. Waxy near-isogenic lines with a non-functional Wx-D1d allele showed consistently increased contents of fat, total fructan, β-glucan, glucose, fructose, sucrose, 1-kestose, 6-kestose, neokestose, nystose and bifurcose compared with non-waxy lines with a functional Wx-D1a allele throughout three growing/harvest seasons. Starch and total pentosan contents were inconsistently influenced by the allelic status of the Wx-D1 locus, while water-soluble pentosan and raffinose contents were not affected. The compositional changes of a low-amylose mutant line with an almost non-functional Wx-D1f allele were closely similar to those of waxy near-isogenic lines, while significantly different changes were barely observed in another low-amylose mutant line with a partly functional Wx-D1g allele in two seasons. These results showed that the Wx-D1 gene has pleiotropic effects on the fat and saccharide contents of bread wheat grain.     

Pythium rot of figmarigold (<Emphasis Type="Italic">Lampranthus spectabile</Emphasis>) caused by <Emphasis Type="Italic">Pythium aphanidermatum</Emphasis>

A new leaf rot disease was found on the leaves of figmarigold (Lampranthus spectabile). The causal organism, identified as Pythium aphanidermatum was found to cause the same symptoms after artificial inoculation and was then reisolated from the inoculated plants. We propose to name the disease Pythium rot of figmarigold.