Evidence for selection pressure from resistant potato genotypes but not from fungicide application within a clonal Phytophthora infestans population

Insight into pathogen population dynamics provides a key input for effective disease management of the potato late blight pathogen Phytophthora infestans. Phytophthora infestans populations vary from genetically complex to more simple with a few clonal lineages. The presence or absence of certain strains of P. infestans may impact the efficacy of fungicides or host resistance. Current evidence indicates that genetically, the Irish populations of P. infestans are relatively simple with a few clonal lineages. In this study, P. infestans populations were genetically characterized based on samples collected at the national centre for potato breeding during the period 2012–16. The dominance of clonal lineages within this P. infestans population was confirmed and the potential selection pressure of fungicide treatment (2013–15) and host resistance (2016) on this clonal P. infestans population was then investigated. It was found that fungicide products did not notably affect the genetic structure of sampled populations relative to samples from untreated control plants. In contrast, samples taken from several resistant potato genotypes were found to be more often of the EU_13_A2 lineage than those taken from control King Edward plants or potato genotypes with low resistance ratings. Resistant potato varieties Sarpo Mira and Bionica, containing characterized R genes, were found to strongly select for EU_13_A2 strains.     

Seasonal water relations in four co-existing native shrub species from Northeastern Mexico

Seasonal xylem water potentials (Ψ, MPa) and their relationship to soil water content and evaporative demand components were studied in the shrub species Acacia amentacea, Celtis ehrenbergiana, Forestiera angustifolia, and Parkinsonia texana var. macra. Predawn (Ψpd) and midday (Ψmd) water potentials were estimated at 15 days intervals, between January 15 and October 30, 2009 using a Scholander pressure bomb at 06:00 h (predawn) and 14:00 h (midday), respectively. During the humid period, Ψpd ranged from ?0.30 MPa (C. ehrenbergiana), to ?0.90 MPa (P. texana). In contrast, over the driest period, Ψpd varied between ?2.18 (P. texana) and ?3.94 MPa (F. angustifolia). At midday, P. texana and F. angustifolia showed the highest (?1.14 MPa) and lowest (?3.38 MPa) Ψ values, respectively. Average soil water content accounted for 35 to 70% of the variation in predawn Ψ. Furthermore, both Ψ reflected the environmental conditions, as indicated by typical correlations observed. The studied shrub species exhibited what seem to be different strategies to avoid damage caused by drought. Thus, P. texana behaved rather as an isohydric plant able to deal well with severe, but short periods of drought. Under exceptionally dry environmental conditions, Ψpd undercut Ψmd values. Similar observations have been made by researchers studying plants in dry ecosystems. All studied native species are recommended for reforestation of the Tamaulipan shrublands, although C. ehrenbergiana and F. angustifolia seem to have limited tolerances for extreme water stress.     

Epizootic haematopoietic necrosis virus—An assessment of the likelihood of introduction and establishment in England and Wales

Epizootic haematopoietic necrosis virus (EHNV) is an iridovirus that affects perch (Perca fluviatilis) and rainbow trout (Oncorhynchus mykiss). It emerged in Australia in the 1980s and has not been discovered elsewhere. It causes a high level of mortality in perch resulting in steep population declines. The main possible routes of introduction of the virus to England and Wales are the importation of infected live fish or carcasses. However, no trade in live susceptible species is permitted under current legislation, and no importation of carcasses currently takes place. The virus is hardy and low levels of challenge can infect perch. Therefore, mechanical transmission through the importation of non-susceptible fish species should be considered as a potential route of introduction and establishment. Carp (Cyprinus carpio) have been imported to the UK from Australia for release into still-water fisheries. A qualitative risk assessment concluded that the likelihood of EHNV introduction and establishment in England and Wales with the importation of a consignment of carp was very low. The level of uncertainty at a number of steps in the risk assessment scenario tree was high, notably the likelihood that carp become contaminated with the virus and whether effective contact (resulting in pathogen transmission) is made between the introduced carp and susceptible species in England and Wales. The virus would only establish when the water temperature is greater than 12 °C. Analysis of 10 years of data from two rivers in south-west England indicated that establishment could occur over a period of at least 14 weeks a year in southern England (when average water temperature exceed 12 °C). Imports of live fish from Australia need to be evaluated on a case-by-case basis to determine which, if any, sanitary measures are required to reduce the assessed risk to an acceptable level.     

Genetic diversity of the myrtle rust pathogen (Austropuccinia psidii) in the Americas and Hawaii: Global implications for invasive threat assessments

Since the myrtle rust pathogen (Austropuccinia psidii) was first reported (as Puccinia psidii) in Brazil on guava (Psidium guajava) in 1884, it has been found infecting diverse myrtaceous species. Because A. psidii has recently spread rapidly worldwide with an extensive host range, genetic and genotypic diversities were evaluated within and among A. psidii populations in its putative native range and other areas of myrtle rust emergence in the Americas and Hawaii. Microsatellite markers revealed several unique multilocus genotypes (MLGs), which grouped isolates into nine distinct genetic clusters [C1–C9 comprising C1: from diverse hosts from Costa Rica, Jamaica, Mexico, Puerto Rico, and USA‐Hawaii, and USA‐California; C2: from eucalypts (Eucalyptus spp.) in Brazil/Uruguay and rose apple (Syzygium jambos) in Brazil; C3: from eucalypts in Brazil; C4: from diverse hosts in USA‐Florida; C5: from Java plum (Syzygium cumini) in Brazil; C6: from guava and Brazilian guava (Psidium guineense) in Brazil; C7: from pitanga (Eugenia uniflora) in Brazil; C8: from allspice (Pimenta dioica) in Jamaica and sweet flower (Myrrhinium atropurpureum) in Uruguay; C9: from jabuticaba (Myrciaria cauliflora) in Brazil]. The C1 cluster, which included a single MLG infecting diverse host in many geographic regions, and the closely related C4 cluster are considered as a “Pandemic biotype,” associated with myrtle rust emergence in Central America, the Caribbean, USA‐Florida, USA‐Hawaii, Australia, China‐Hainan, New Caledonia, Indonesia and Colombia. Based on 19 bioclimatic variables and documented occurrences of A. psidii contrasted with reduced sets of specific genetic clusters (subnetworks, considered as biotypes), maximum entropy bioclimatic modelling was used to predict geographic locations with suitable climate for A. psidii which are at risk from invasion. The genetic diversity of A. psidii throughout the Americas and Hawaii demonstrates the importance of recognizing biotypes when assessing the invasive threats posed by A. psidii around the globe.     

Forest monitoring with TerraSAR-X: first results

Several TerraSAR-X satellite images acquired in high resolution spotlight mode with different polarisations for two study sites in southern Germany were used to distinguish forest from other land cover classes (agriculture, built-up, water bodies) using logistic regression models. In general, we observed that the mean and particularly the standard deviation of the backscatter were viable measures to discriminate land cover classes. Both measures were lowest for water bodies and highest for built-up areas, with agricultural areas and forest in intermediate positions. Trees outside forest were not differentiable from forest with the applied method. The HH-polarised image was better suited for a classification of built-up areas, whereas the VV-polarised image was more appropriate when classifying agricultural areas. Consequently, the combination of the two differently polarised images leads to a significantly better model. Since forests in one study area were generally found on steeper slopes in comparison to other land cover classes, the inclusion of terrain slope further improved the classification, which resulted in an overall accuracy of 92–95%. Systematic differences in the parameter values of the explanatory variables for one class between the study areas may be caused by differing class probabilities. Thus, transferring the model of one study area to the image of another resulted in a 7–9% loss of accuracy.     

Sugar changes in Clementine and orange fruit during ripening

Summary

Juice and rind sugar content, fruit volume and rind colour were determined in cvs Fina, Oroval and Hernandina Clementines and in cvs Navelina, Washington Navel and Navelate oranges, cultivars that are harvested at different periods during the season. An accumulation of sugars was observed in all cultivars during ripening, mainly due to an increase of sucrose in the juice and of reducing sugars in the rind. Cv Hernandina, a late Clementine, showed a slower rate of sugar increase in rind.     

Preharvest calcium sprays improve volatile emission at commercial harvest of 'Fuji Kiku-8' apples

Apple (Malus × domestica Borkh.) fruit intended for long-term storage are frequently harvested commercially before becoming fully ripe, often resulting in poor aroma development. Since postharvest calcium dips have proved effective for the enhancement of flavor-related volatile esters after cold storage of apples, this study was undertaken in order to assess whether preharvest calcium sprays (7 weekly applications at 1.6%, w/v, 81-123 days after full bloom) could also aid in improving this important attribute at harvest. This procedure significantly increased calcium content in treated fruit. The emission of aroma-related volatile esters by untreated and calcium-treated 'Fuji' apples was then monitored during maturation and ripening over two months prior to commercial harvest. Results indicate that most of the compounds contributing to overall flavor in ripe fruit were enhanced in response to preharvest calcium applications, suggesting that this procedure may be suitable for the improvement of fruit aroma at harvest. The emission of acetate esters was particularly favored, consistent with higher acetaldehyde contents in treated fruit. These effects arose apparently from increased pyruvate decarboxylase (PDC) and alcohol dehydrogenase (ADH) activities, possibly leading to a better supply of alcohols and acyl CoAs for ester biosynthesis.