Phytopathogenic fungi new for southern Anatolia,Turkey

Twenty-nine new records are reported from Turkey. The fungi species, including their macro-and microscopic features and distributions, are described. http://www.phytoparasitica.org posting July 14, 2004.     

First genetic characterization of equine adenovirus type 1 (EAdV-1) in Turkey

Equine adenovirus type 1 (EAdV-1) is a cause of repiratory tract infection in equids. In present study for the first time in Turkey, the prevalence of EAdV-1 in nasal swab samples obtained from horses showing respiratory symptoms was investigated by polymerase chain reaction (PCR), and molecular characterization of the hexon gene detected in the Turkish (TR) strain was performed. Overall, the prevalence of EAdV-1 was found low (1.4%) as indicated by a positive PCR reaction from the nasal swab extracts tested. Phylogenetic analysis based on the partial sequences of the hexon gene of a TR-EAdV-1 strain with those of previously isolated AdVs from different mammals and an EAdV-1 M1 strain showed that the EAdV-1 strains were placed into a unique cluster. Although the TR-EAdV-1 strain was closely related to CAV-1, CAV-2 and bat adenovirus reference strains, larger-scale studies are necessary to better understand the molecular epidemiology and population structure of EAdV-1 in Turkey.     

Detection of stapylococcal enterotoxin,methicillin-resistant and Panton–Valentine leukocidin genes in coagulase-negative staphylococci isolated from cows and ewes with subclinical mastitis

Coagulase-negative staphylococci (CNS) are the most prevalent mastitis pathogens. However, virulence characteristics of CNS have not been well determined. The presence of genes for enterotoxins (sea-sej), toxic shock syndrome toxin-1 (tst), the exfoliative toxins (eta, etb), Panton–Valentine leukocidin (pvl) and mecA of CNS species isolated from cows and ewes with subclinical mastitis was investigated in this study. A total of 121 CNS (81 cows, 40 ewes) representing 18 different Staphylococci species were examined by PCR, and 38.1% (33 cows and 13 ewes) of CNS isolates had one or more se genes. The difference between percentages for SE toxin genes of CNS strains isolated from cows (40.7%) and ewes (32.5%) was not statistically significant (P > 0.05; χ ² = 0.380). It was found that S. simulans isolates had the highest prevalent se genes. Furthermore, the most common SE gene types was seh-sej. In this study, none of the isolates harbored the toxic shock syndrome toxin gene (tsst) and the exfoliative toxin genes (eta, etb). Five cow (6.17%) and three ewe CNS (7.5%) isolates had mecA gene. Three cow (3.7%) and two ewe CNS (5.0%) isolates had pvl gene. In conclusion, the present study showed that CNS species isolated from cows and ewes could serve as potential reservoir of se, mecA, and pvl genes.     

Phytophthora citrophthora,a new pathogen causing decline on horse chestnut in Turkey

Dieback symptoms were observed on horse chestnut trees planted approximately 40 years ago in Ankara, Turkey. Lesions at the stem bases of the affected trees were similar to those of ink disease on sweet chestnut. A Phytophthora sp. was isolated from the fine roots and soil samples collected around the stem bases by baiting using chestnut leaves. The pathogen was identified as Phytophthora citrophthora based on several morphological features and DNA sequences of the ITS region. Pathogenicity of P. citrophthora was tested by stem inoculation on 3‐year‐old horse chestnut saplings. P. citrophthora produced large cankers in 20 days and killed 40% of the saplings. This is the first report of P. citrophthora causing dieback on horse chestnut.     

Armillaria ostoyae associated with dying 60‐year‐old Scots pines in northern Turkey

We investigated an Armillaria root disease centre in a 60‐year‐old, naturally regenerated Pinus sylvestris stand located at 1250 m altitude in Sinop province in northern Turkey. Based on sequence analysis of the internal transcribed spacer region of the rDNA, the mycelial fans sampled from the infected trees were Armillaria ostoyae. Multilocus genotyping indicated that the fans belonged to a single genet, at least 0.2 ha in size. Drought as a predisposing factor is discussed. The study area received 50–70 and 25–50% of the normal precipitation in May, June and August in 2009 and in August and September in 2010, respectively. Moreover, earlier excavation work to prepare a forest road had probably disrupted the water table in the affected stand.     

Development of EST‐SSR markers for diversity and breeding studies in opium poppy

All publicly available opium poppy expressed sequence tag (EST) sequences, totalling 20 885, were assembled into unigenes and examined for simple sequence repeats (SSRs). Nearly 19% of the 14 957 unigenes contained SSRs with 4% harbouring more than one SSR. Average density of the SSRs was 1 SSR per 3.6 kb of non‐redundant EST sequence. Trinucleotide SSRs were most frequently identified (39%), and many of the most prevalent motifs were AT‐rich. Flanking primers were designed for 86% of the SSRs and 67 primer pairs were tested on 37 opium poppy accessions and seven related species. All markers were transferable to the related species. Polymorphism information content (PIC) values for the markers were intermediate for comparisons within opium poppy (average of 0.27) and slightly higher for comparisons across species (average of 0.29). The markers were found to be useful for diversity analysis as they successfully distinguished among Turkish opium poppy accessions and land races.     

Effects of Different Irrigation Levels and Arbuscular Mycorrhizal Fungi (AMF), Photosynthesis Activator,Traditional Fertilizer on Yield and Growth Parameters of Dry Bean (Phaseolus Vulgaris L.) in Arid Climatic Conditions

A field experiment has been conducted to determine the effects of different irrigation water and AMF (Arbuscular Mycorrhizal Fungi) biofertilizer, photosynthesis activator and traditional fertilizer dry bean (Phaseolus vulgaris L.) on yield and growth parameters in Nevsehir Province of Turkey in 2015. The experiment has been carried out using three replications in a split plot design with three different irrigation types as main plots and AMF biofertilizer (ERS), photosynthesis activator (Multigreen-Mg), traditional fertilization (TF-Control), ERS + Mg, ERS + TF and TF + Mg applied as subplots. The number of pods per plant, the length of pods, the number of grains per pod, the weight of grains per plant, the yield of grains, 1000 seed weight, the number of grains per plant, protein yield, arbuscular mycorrhizal fungi rate have been evaluated as yield and growth criteria in the study. In the experiment, as well as the treatment x irrigation interaction, the plant height, pod number per plant, pod lenght, grain number per pod, grain weight per plant, grain yield, 1000 seed weight, grain number per plant, protein rate/grain, protein yield, root weight and AMF colonization parameters, were the other studied properties that were found to be significant. The results obtained were 877.6 mm for I₁₀₀ irrigation treatment, 512.2 mm for I₅₀ irrigation treatment and 40.19 mm water for I₃₀ irrigation treatment. Regarding the growth parameters of dry bean, the highest PH was in ERS + Mg (67.66 cm), the lowest PH was in ERS (54.33 cm); In I₅₀, the highest Plant Height (PH) was in ERS + Mg (65.66 cm), the lowest PH was in TF-Control (53.00 cm); and in I₃₀, the highest PH was in TF-Control (50.66 cm), and the lowest PH was again in ERS + Mg (44.33 cm). For protein yield (PY) value, ERS + Mg, ERS + TF, TF + Mg have been placed in the same group, in I₁₀₀ and I₅₀ irrigation treatment. The highest value was ERS + TF (34.90 kg da^?1) in I₁₀₀, The lowest value was TF-control (19.90 kg da^?1) in I₃₀ irrigation treatment. In terms of mycorrhiza colonization ratio, ERS has been ranked first in all irrigation treatments, while the highest mycorrhiza colonization has been observed in I₃₀ irrigation treatment (26.30%). ERS was followed by ERS + Mg (23.33%). As expected, the lowest mycorrhiza colonization ratio in all irrigation treatments have been observed in TF-control treatment, while the highest mycorrhiza colonization ratio has been respectively observed in I₃₀ and I₅₀ irrigation topics. The highest root weight (RW) in I₁₀₀ irrigation treatment was observed in ERS (15.06 g plant^?1) and it was observed in ERS (19.05 g plant^?1; 26.30 g plant^?1) in I₅₀ and I₃₀ irrigation treatments. The lowest RW in all irrigation treatments has been observed in TF + Mg (4.43 g plant^?1, 6.40 g plant^?1, 10.26 g plant^?1), respectively.     

基于模糊综合评价法的海洋牧场综合效益测算

聚焦于海洋牧场综合效益的评价,采用组合赋权法和模糊综合评价法从生态、经济、社会三个角度构建海洋牧场综合效益评价指标体系,并以青岛、威海、烟台、东营四市为例进行实证分析。研究表明,提高海洋牧场综合效益的关键在于保持经济与生态的协同发展,与此同时需关注国家级海洋牧场数量、优质渔获比例和劳动力从业结构等重要指标,另外研究发现青岛、威海、烟台、东营四市海洋牧场综合效益均有较大提升空间。在此基础上,从生态效益升级、经济效益发展及社会效益扩大三个维度提出可行的建设方案。