The ecoresponsive genome of Daphnia pulex

We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the Daphnia lineage. The coexpansion of gene families interacting within metabolic pathways suggests that the maintenance of duplicated genes is not random, and the analysis of gene expression under different environmental conditions reveals that numerous paralogs acquire divergent expression patterns soon after duplication. Daphnia-specific genes, including many additional loci within sequenced regions that are otherwise devoid of annotations, are the most responsive genes to ecological challenges.     

Production and dissolution rates of earthworm-secreted calcium carbonate

Earthworms secrete granules of calcium carbonate. These are potentially important in soil biogeochemical cycles and are routinely recorded in archaeological studies of Quaternary soils. Production rates of calcium carbonate granules by the earthworm Lumbricus terrestris L. were determined over 27 days in a range of soils with differing chemical properties (pH, organic matter content, water holding capacity, bulk composition, cation exchange capacity and exchangeable cations). Production rate varied between soils, lay in the range $0–0.043{\text{mmol}}_{{\text{CaCO}}_3}$ (0–4.3 mg) earthworm^?1 d^?1 with an average rate of $8\times {10}^{?3}{\text{mmol}}_{{\text{CaCO}}_3}$ (0.8 mg) earthworm^?1 d^?1 and was significantly correlated (r = 0.68, P ≤ 0.01) with soil pH. In a second experiment lasting 315 days earthworms repeatedly (over periods of 39–57 days) produced comparable masses of granules. Converting individual earthworm granule production rates into fluxes expressed on a per hectare of land per year basis depends heavily on estimates of earthworm numbers. Using values of 10–20 L. terrestris m^?2 suggests a rate of $18–3139{\text{mol}}_{{\text{CaCO}}_3}{\text{ha}}^{?1}{\text{yr}}^{?1}$. Data obtained from flow-through dissolution experiments suggest that at near neutral pH, granule geometric surface area-normalised dissolution rates are similar to those for other biogenic and inorganic calcites. Fits of the data to the dissolution relationship r = k(1 ? Ω)ⁿ where r = dissolution rate, k = a rate constant, Ω = relative saturation and n = the reaction order gave values of k = 1.72 × 10^?10 mol cm^?2 s^?1 and n = 1.8 for the geometric surface area-normalised rates and k = 3.51 × 10^?13 mol cm^?2 s^?1 and n = 1.8 for the BET surface area-normalised rates. In 196 day leaching column experiments trends in granule dissolution rate referenced to soil chemistry corresponded to predictions made by the SLIM model for dissolution of limestone in soil. If soil solution approaches saturation with respect to calcium carbonate, granule dissolution will slow or even stop and granules be preserved indefinitely. Granules have the potential to be a small but significant component of the biogeochemical cycling of C and Ca in soil.     

Comparison of digital and optical hand-held refractometers for the measurement of feline urine specific gravity

Measuring urine specific gravity (USG) is an important component of urine analysis as it evaluates renal concentrating capability. The objective of this study was to quantify the difference in USG values between a hand-held optical analogue refractometer and a cat-specific digital instrument. Urine samples from 55 cats were assessed. There was a statistically significant difference between these two refractometers (P<0.001), with the optical refractometer (mean USG=1.031) consistently reading higher than the digital refractometer (mean USG=1.027). Results for a random subset of the samples (n=10) were compared with urine osmolality and both the optical and digital instruments demonstrated excellent correlation. While an accurate USG reading is important, it is unlikely that the statistical significance between the two instruments is clinically significant and, therefore, unlikely to result in a change in patient evaluation or treatment plans. While both the digital and optimal refractometers are highly correlated to the urine osmolality, making both devices valid for assessment of USG in clinical practice, this digital device is easier to read and eliminates the variability of subjective interpretation.     

Effects of dredged spoils on selected microbial activities in lake column simulators

Four Lake Column Simulators were filled with hypolimnetic water from Lake Ontario and inoculated with algae and fish. Various microbial processes were monitored before and after the addition of dredged spoils. Loading rates of dredged spoils of 0.33, 3.3 or 33 g day^?1 were used for each of three columns and one column with no addition of dredged spoils was maintained as a control. The effects of dredged spoils on microbial activities were most pronounced at the highest loading rate. ³²P-PO₄ was rapidly removed from the control water but the presence of suspended particles from dredged material increased both biological assimilation and physical adsorption processes. The influence of dredged spoils on ³²P-PO₄ uptake was most pronounced immediately following loading. Dredged spoils also increased ¹⁴C-acetate mineralization in water and the effects were again more pronounced immediately following loading. A 3 fold increase in heterotrophic activity during a 1 h incubation at 20°C was observed following addition of a 33 g day^?1 loading. Dredged spoils increased the levels of N₂-fixation in the columns as indicated by the C₂H₂-reduction assay procedure. Suspended dredged material reduced light penetration and decreased primary production in the columns. The increased availability of dissolved and particulate organic and inorganic nutrients from continuous addition of dredged spoils was responsible for a general stimulation of microbial activities in the epilimnetic and hypolimnetic regions of the simulated lake columns.     

Overdose during chemical restraint in a black rhinoceros (Diceros bicornis)

A juvenile female black rhinoceros (Diceros bicornis) was successfully treated after overdose of drugs used for chemical restraint. Subsequent general anaesthesia for surgical reduction of a recurrent rectal prolapse was uneventful. Over a 25-minute period before transportation to the veterinary hospital, the animal received a total dose of 1.225 mg etorphine, 30 mg acepromazine and 30 mg detomidine. Based on an estimated mass of 200 kg, these corresponded to doses of 6.1 microg kg(-1) etorphine, 150 microg kg(-1) acepromazine, and 150 microg kg(-1) detomidine which constitutes considerable overdose for each drug given separately, notwithstanding the synergy that probably resulted when the three drugs were present concurrently. The estimated body mass may have substantially overestimated the actual body mass and exacerbated overdosage. The animal was recumbent and apnoeic on arrival at the hospital. Heart sounds were auscultated and a weak peripheral pulse was palpated; no pulse deficits were detected, although the heart rate was low. The trachea was intubated, inspired breath was enriched with oxygen and the lungs ventilated manually. Diprenorphine (1.5 mg) was given intravenously and spontaneous breathing resumed 11 minutes later. After induction of general anaesthesia using isoflurane, emergency surgery for correction of rectal prolapse was performed, from which the animal recovered uneventfully. The case highlights some of the practical problems that may be encountered in dealing with dangerous and unfamiliar species.     

Evaluation of enzyme-linked immunosorbent assays performed on milk and serum samples for detection of paratuberculosis in lactating dairy cows

OBJECTIVE: To determine whether results obtained for milk and serum samples with ELISAs intended for diagnosis of paratuberculosis in dairy cows were comparable to results obtained by means of mycobacterial culture of fecal samples. DESIGN: Cross-sectional study. ANIMALS: 689 lactating dairy cows in 9 Ontario herds. PROCEDURE: Milk, serum, and fecal samples were obtained from all cows. Fecal samples were submitted for mycobacterial culture. Serum samples were tested with a commercially available ELISA for antibodies against Mycobacterium paratuberculosis, and preserved milk samples were tested with an indirect ELISA for antibodies against M paratuberculosis. RESULTS: Results were positive for 130 of the 689 (18.9%) serum samples, 77 of the 689 (11.1%) milk samples, and 72 of the 689 (10.4%) fecal samples. The level of agreement between results for milk and serum samples was only moderate. Proportions of positive results for serum and fecal samples were significantly different, but proportions of positive results for milk and fecal samples were not significantly different. In addition, results for milk samples had a higher level of agreement with results of mycobacterial culture than did results for serum samples. CONCLUSIONS AND CLINICAL RELEVANCE: Results suggest that the indirect ELISA used on milk samples may be a convenient method of detecting paratuberculosis in dairy herds.     

Suspected toxoplasma-associated myocarditis in a cat

Clinical toxoplasmosis is commonly reported in the cat, with the most consistent findings being ocular, pulmonic, hepatic, neurological, gastrointestinal and muscular abnormalities. Myocarditis, whilst frequently identified at post-mortem examination, has not been identified ante-mortem. In immunocompromised humans, myocarditis associated with toxoplasmosis is not an uncommon complication. In such cases, lymphocytic myocardial infiltration can lead to depressed myocardial function, which can be associated with congestive heart failure, rhythm disturbances and pericardial effusions. In addition, myocardial failure has been reported in immunocompetent humans associated with active toxoplasmosis [Chandenier J, Jarry G, Nassif D, Douadi Y, Paris L, Thulliez P, Bourges-Petit E, Raccurt C (2000) Congestive heart failure and myocarditis after seroconversion for toxoplasmosis in two immunocompetent patients. European Journal of Clinical Microbiological Infectious Disease 19, 375-379]. Here we describe a cat with echocardiographic changes consistent with infiltrative or inflammatory disease, and elevated IgG and IgM titres to Toxoplasma gondii. There was resolution of these myocardial changes once the toxoplasmosis was treated.     

Natural control of the cereal cyst nematode, Heterodera avenae Woll., by soil fungi at three sites

Populations (eggs/g dried soil) of the cereal cyst nematode Heterodera avenae Woll. failed to increase at two sites on susceptible spring barley but increased slightly at another on spring oats. Nematode multiplication was not related to the numbers of females produced on roots in summer; fewer female nematodes were produced where populations increased than where they declined. The failure of the nematode to multiply was due to few (less than 40%) of the females forming cysts containing eggs, a reduction in fecundity and an increase in the number of encysted eggs containing fungi. Verticillium chlamydosporium was the main fungus causing the decline in nematode numbers. Nematophthora gynophila was present at all sites but was most active at Woburn where irrigation was used to keep soils moist. V. chlamydosporium was the main parasite of encysted eggs at all sites but soil-borne saprophytic fungi were also isolated. These fungi were not found in many eggs and were considered to be only weak parasites. Differences in resting fungal spore densities in soil were not always related to differences in rates of parasitism. The activity of N. gynophila is affected by soil moisture and density of females as well as the density of spores in soil. The production of chlamydospores by V. chlamydosporium may also depend on the isolate of fungus present: some isolates produce no such spores on artificial media or, possibly, in soil. This work has shown that V. chlamydosporium and N. gynophila can reduce cereal cyst nematode populations under susceptible cereals but it is difficult to predict at present if they will give an effective control in a given soil or season.