Effects of within-patch habitat structure and variation on fish assemblage characteristics in the Bernecei stream, Hungary

Abstract –  Over a 3-year period we examined variability in physical habitat structure and species richness, abundance and assemblage composition of fishes in 13 habitat patches in the Bernecei stream, Hungary. Principal component analysis of habitat structure data from patches elucidated a riffle-run-pool habitat gradient across patches. Temporal habitat variability increased significantly from riffle to pool patches. Fish assemblage characteristics displayed relatively continuous change over the habitat gradient and were relatively stable within patches. Assemblage structure properties (e.g., species richness) displayed different responses to the habitat gradient and to within-patch habitat variability. In general, pool patches had more diverse assemblages and greater within-patch assemblage variability than riffle patches. However, within-patch dynamics were largely determined by the population dynamics of a habitat generalist (i.e., minnow). Broad scale environmental variability (i.e., a catastrophic 100-year flood) also appeared to affect within-patch fish assemblage characteristics. Our results demonstrate that fish assemblage structure is influenced by physical variability (i.e., both floods and spatio-temporal habitat variability) within the Bernecei stream.     

Spatio‐temporal patterns of fish assemblage structure in a coastal plain stream: appropriate scales reveal historic tales

Quantifying assemblage structure across spatio‐temporal scales is ecologically important and further aids in the understanding of community organisation processes. Currently, few studies have assessed assemblage structure across generous magnitudes of scale, and influences of processes (biotic and abiotic) responsible for structuring assemblages are still questioned. Using community and hydrologic data collected over a 22‐year period from a stretch of river nearing 150 km, we examined spatio‐temporal fish assemblage structural patterns in a temperate coastal plain stream. Results indicated that significant changes in assemblage structure across time were influenced by environmental disturbances, including drought and hurricane events. Assemblages were restructured in a punctuated manner directly following these events, and complete recovery of initial assemblage structure did not occur across the study period. Additionally, we found spatial differentiations between upstream and downstream assemblages, which were driven by greater abundances of several species in downstream sites. Our results suggest that assemblage structure is influenced by environmental variation, specifically, extreme disturbance events and spatial habitat heterogeneity.     

Fish assemblages in Atlantic Forest streams: the relative influence of local and catchment environments on taxonomic and functional species

Streams are under environmental pressures acting at different scales that influence the ecological organisation of their fish assemblages. However, the relative influence of the different scale‐related variables on assemblage composition and function is poorly understood. We evaluated the importance of local‐ and catchment‐scale environmental variables, as well as the spatial structure of the sampling sites, in shaping fish assemblages in Atlantic Forest streams. Local‐scale variables were those measured at the sampling sites, describing the local habitat conditions (e.g. depth, substrate type, altitude). Catchment‐scale variables were those integrating the upstream landscape of the sampling sites (e.g. catchment land use). Spatial distances were calculated from watercourse distance using principal coordinates of neighbour matrices. Altogether, 28 local and seven catchment variables were initially subjected to two processes of eliminating co‐linearity. Redundancy analysis was applied to the three matrices (spatial, local and catchment) to quantify the variance in the structure of the fish assemblages explained by each matrix. Local variables explained more variability in both taxonomic and functional assemblage structure, than catchment and spatial variables. Local variables also changed along the longitudinal gradient, which consequently influenced fish assemblage structure. This pattern was also influenced by anthropogenic alteration and non‐native species, which were more abundant in downstream sites. These results highlight the need to assess Atlantic Forest streams under different environmental scales, especially through the use of quantitative local‐scale metrics, and to consider the effects of longitudinal patterns in structuring fish assemblages when developing and implementing monitoring programmes, impact studies and conservation plans.     

Long‐term stability of eelgrass fish assemblages in two highly developed coastal estuaries

Changes in fish assemblages were tracked in representative eelgrass (Zostera marina L.) beds within two estuaries on the urbanised coast of southern California, USA, San Diego Bay and Mission Bay, from 1987 to 2010. Assemblages were sampled twice yearly (spring and summer) at day and night using beach seines. Assemblage stability was examined over time along with changes in assemblage structure across time of day and season, including the influence of temporally variable abiotic variables. Only the occasionally occurring fish, those present in <70% of samples, in Mission Bay appeared to be shifting to a new assemblage. Although season and sampling time significantly affected assemblages, correlations with abiotic factors were low. Given the long history of urban development of these estuaries, community shifts may have occurred prior to the onset of sampling, giving the appearance of stability. Alternatively, eelgrass habitat may be providing a refuge from long‐term disturbances.     

The relative influence of spatial context and catchment‐ and site‐scale environmental factors on stream fish assemblages in a human‐modified landscape

Abstract – Environmental factors act in a hierarchical manner at multiple spatial scales to influence the organisation of ecological assemblages; however, the relative influence of the different scale‐related factor groups is poorly known. We evaluated the importance of catchment‐scale and site‐scale environmental variables, as well as the spatial context of the sampling sites, in shaping stream fish assemblages in an agriculture‐dominated landscape in Hungary. Beside the variables describing spatial context (principal coordinates of a truncated distance matrix among sites), altogether 60 environmental variables were used to predict variability using a variance‐partitioning procedure in redundancy analysis. Presence–absence‐ and relative abundance‐based data were examined at two assemblage levels (entire assemblage and native assemblage) at 54 stream sites. Incorporation of spatial variables increased largely the total explained variability in case of relative abundance, but not for presence–absence data. Of the environmentally explained variance, catchment‐scale variables (e.g., land cover types, patch density) were relatively more influential for the native assemblage‐level analyses, than for analyses at the entire assemblage level, where site‐scale variables (e.g., altitude, depth) proved to be more influential. In addition, pure catchment‐ and pure site‐scale variables have the primary role in determining fish assemblage patterns, whereas the influence of shared variance and that of site‐scale riparian variables proved to be less important. Our findings demonstrate the importance of incorporating the spatial context of the sampling sites in predicting fish assemblage patterns and the effects of channelisation (dikes) in shaping assemblage–environment relationships in this human‐influenced landscape.     

Systematic point sampling of fish communities in medium‐ and large‐sized rivers: sampling procedure and effort

Compared with small rivers and streams, the study of fish communities in large rivers remains challenging as spatial and temporal data variability can be greatly influenced by sampling strategy and operator choice. In an attempt to limit this variability, a new sampling protocol for fish communities in medium‐ to large‐sized rivers was developed, based on point sampling by electric fishing and using standardised procedures and effort. Here, change in data quality (assemblage abundance, richness, structure and biotic index) with increasing sampling effort (from 1 to 100 sampling points) was evaluated. A total of 75 sampling points are proposed as the standard number of samples per site. Broadly, the results show that the application of 75 sampling points provides a reproducible representation of fish community structure in medium and large rivers, with little additional information provided by further sampling except under certain conditions, when 100 points are recommended to maintain data quality.     

Effects of an extreme flash flood on the native fish assemblages across a Mediterranean catchment

Abstract  The effects of an extreme flash flood on the native fish assemblages across a Mediterranean catchment in Southwest Portugal were investigated. The fish community structure and habitat were surveyed at 10 sites pre- and post-flood. Overall species richness and rank abundances changed little after the flood, despite there being a consistent decline in the abundance of small cyprinids. Pre- and post-flood habitat correlates of abundance changed for at least some species, and variability in assemblage structure was associated with flood, depth and pH. These results indicate that extreme floods occurring early in the wet season may have little disruptive effects on the overall structure of native fish assemblages in Mediterranean streams, although may at least partially influence population dynamics for some species. Habitat quality and complexity are likely to play a role in mediating species responses to flooding.     

Concurrent assessment of fish and habitat in warmwater streams in Wyoming

Abstract  Fisheries research and management in North America have focused largely on sport fishes, but native non-game fishes have attracted increased attention due to their declines. The Warmwater Stream Assessment (WSA) was developed to evaluate simultaneously both fish and habitat in Wyoming streams by a process that includes three major components: (1) stream-reach selection and accumulation of existing information, (2) fish and habitat sampling and (3) summarisation and evaluation of fish and habitat information. Fish are sampled by electric fishing or seining and habitat is measured at reach and channel-unit (i.e. pool, run, riffle, side channel, or backwater) scales. Fish and habitat data are subsequently summarised using a data-matrix approach. Hierarchical decision trees are used to assess critical habitat requirements for each fish species expected or found in the reach. Combined measurements of available habitat and the ecology of individual species contribute to the evaluation of the observed fish assemblage. The WSA incorporates knowledge of the fish assemblage and habitat features to enable inferences of factors likely influencing both the fish assemblage and their habitat. The WSA was developed for warmwater streams in Wyoming, but its philosophy, process and conceptual basis may be applied to environmental assessments in other geographical areas.     

Fish assemblage structure in relation to seasonal environmental variation in sub‐lakes of the Poyang Lake floodplain,China

The Yangtze River and its watershed have undergone vast changes resulting from centuries of human impacts, yet ecological knowledge of the system is limited. The seasonal variation and spatial variation of three sub‐lakes of Poyang Lake, a huge wetland in the middle Yangtze Basin, were investigated to examine how fish assemblages respond to seasonal hydrology and associated environmental conditions. In all three sub‐lakes, fish assemblage structure revealed strong variations associated with seasonal water level fluctuation. Fish species richness in all sub‐lakes was highest during the middle of the monsoon season and lowest during the dry season. Fish numerical abundance and biomass varied significantly, with several of the most common species having inconsistent patterns of seasonal variation among sub‐lakes. Fish assemblage structure was significantly associated with environmental gradients defined by water level, aquatic macrophyte coverage, conductivity and dissolved oxygen concentration. Assemblage composition in all three sub‐lakes underwent strongest shifts between December and April, the period when water levels were lowest and fishing has the greatest impact on fish stocks. Future impacts that change the hydrology of the middle Yangtze would alter the dynamics of habitat connectivity and affect environmental conditions and fish assemblages of the Poyang Lake wetland system.     

Long-term variability in the fish assemblage around Japan over the last century and early warning signals of regime shifts

The marine ecosystems around Japan are very productive and have typical wasp-waist structure dominated by small pelagic fishes such as sardine, exhibiting large low-frequency fluctuations in biomass. Whereas studies on the variability in abundance of individual species such as sardine and anchovy are popular, only a few studies focused on the long-term variability of fish assemblage around Japan. In this study, 13 species/taxa ranging from small forage to large predatory species and from warm- to cold-water species were selected to indicate essential characteristics of the fish assemblage and their drivers were analysed based on fishery, oceanographic and climatic data sets from 1901 to 2018. Results show that two outstanding peaks during the 1930s and 1980s were characterized by abundant sardine. Additionally, species composition showed high similarities during similar temperature regimes while exhibiting contrasts during different temperature regimes. Variations and regime shifts in dominant patterns and fish community indices coincided well with the Atlantic Multidecadal Oscillation (AMO) and regional sea surface temperature (SST). Furthermore, gradient forest analysis identified AMO and regional SSTs as most important predictors of dominant patterns and fish community indices, suggesting that the decadal and multidecadal variability in the fish assemblage around Japan was forced by basin-scale climate variability as inherent in the AMO through its connections with regional SSTs. Autocorrelation coefficient demonstrated that the ecological indicators have the potential to be early warning signals of regime shifts, which suggests the possibility of coming cold regime since around 2015 and has important implications for fisheries management.     

基于河流网络体尺度的皖河河源溪流鱼类群落的空间格局

2013年7-8月对大别山皖河河源1～3级溪流的鱼类进行了调查,着重从河流网络体空间尺度研究了鱼类多样性及群落结构的空间格局,探讨了局域栖息地条件和支流空间位置对鱼类群落的影响.1～3级溪流间,鱼类物种数随溪流级别增大显著增多,但个体数无显著变化(P＞0.05);长河、潜水和皖水3条支流间鱼类物种数和个体数均无显著差异(P＞0.05).鱼类物种数受局域栖息地条件(海拔)和支流空间位置(河流级别和下游量级)的联合影响,但鱼类个体数仅受局域栖息地条件(海拔)的影响.不同溪流级别和不同支流间的群落结构均无显著差异(P＞0.05).同物种数类似,鱼类群落结构也受局域过程(海拔)和空间过程(汇合量级和下游量级)的联合影响.本研究表明,总体上皖河河源溪流网络体中的鱼类群落是局域过程和空间过程联合作用的产物.因此,为合理保护和管理皖河河源的溪流鱼类物种,有必要兼顾局域栖息地条件与河流网络连通性的保护和恢复.     

Spatial and temporal variations in fish larvae assemblages of Ilha Grande National Park,Brazil

For understanding the reproductive dynamics of fish assemblages and their relationship with environmental conditions, we need to know more about spawning areas and periods. Studies on temporal and spatial patterns of occurrence of fish eggs and larvae are important for obtaining this kind of information quickly and accurately. In this study, we analysed spatial and temporal patterns of fish larvae in different biotopes in a stretch of the floodplain of Upper Parana River, in Ilha Grande National Park, southern Brazil. We carried out night sampling during six spawning periods, from 2001 to 2008. We selected 18 sampling sites distributed in the mainstream, tributaries and lagoons, encompassing several types of biotopes. We observed significant spatial and temporal differences among biotopes in the composition and structure of the fish larvae assemblages. Lentic environments favoured the development of sedentary and migratory species, whereas tributaries were used as migratory routes and spawning areas. The assemblage in period I differed from the assemblages of other periods, probably because of the presence of dams in the Parana River. No association was observed between environmental variables and spatial and temporal patterns of the ichthyoplankton assemblages. Hence, conservation measures are essential to maintain the environmental integrity of spawning (tributaries) and development areas (lagoons) for the maintenance of biodiversity in the floodplain of Upper Paraná River.     

Fish assemblages structure and function along environmental gradients in rivers of Gabon (Africa)

Abstract –  We examined patterns in fish species assemblages structure and function along environmental gradients in rivers of Gabon. Species presence–absence data from 52 sites were first analysed by canonical correspondence analysis. Results showed that the position of sites along the upstream–downstream gradient, together with elevation and water conductance were the most important predictors of local fish assemblage composition. Assemblage richness and trophic structure were further investigated using regression tree analysis. Results revealed a general increase in species richness from upstream to downstream areas and a transition from insectivorous to omnivorous, herbivorous and piscivorous species along this longitudinal gradient. There were several similarities between these previous patterns and those observed in other temperate streams suggesting a potential convergence in fish assemblage along environmental gradients in tropical and temperate riverine systems. From a conservation standpoint, these results highlight the need to evaluate all habitat types along rivers longitudinal gradient to integrate the full spectrum of species assemblages within conservation plans.     

Fish assemblages as influenced by environmental factors in streams in protected areas of the Czech Republic

Abstract –  Three streams of comparable size located in different landscape-protected areas were selected for studying the effect of environmental factors on fish assemblages using indirect (detrended correspondence analysis, DCA) and direct (canonical correspondence analysis, CCA) gradient analysis. DCA of species showed well a gradient of assemblage changes in the longitudinal profile. DCA of sites stressed the variability between the fish assemblages of the three streams. This pattern was then confirmed by the highly significant between-stream CCA. In the within-site CCA, environmental factors explained 50.7% variability for presence–absence data and 58.3% for the relative abundance data. The analysis revealed that number of ponds and land use are the most influential factors of the strongest environmental gradient. However, in the partial CCAs, factor substratum type explained the largest proportion of the variability affecting fish in their habitat choice. Generally, presence–absence and relative abundance data of fish gave similar results in both DCA and CCA analyses; the same environmental factors proved to be important in both data type analyses. The environmental factors explain more variability than the regional (between-stream) one. The total proportion of variability explained by the presence–absence data analysis was 71.9% and in the relative abundance analysis even 80.8%. The environmental factors measured during the field survey explain 2.1- and 3.4-times more assemblages' variability than factors measured from a hydrological map.     

A review of existing fish assemblage indicators and methodologies

Abstract  Fish assemblage indicators developed throughout the world were reviewed and key differences in methodologies depending on ecoregions, basins and contrasting fish fauna summarised. Common elements of existing Indices of Integrity were identified to support the development of a European-wide fish index. These include, using reference condition, accounting for natural fish assemblage variability, evaluating metric precision and selecting the most sensitive and complementary metrics. For future developments, it was recommended to pay more attention to temporal variability in fish assemblages, age structure of key (sentinel) species and fish migration. Testing hypotheses at different steps of the process seems to be the appropriate way to design fish indices.     

Habitat heterogeneity in eelgrass fish assemblage diversity and turnover

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Flood pulse and the dynamics of fish assemblage structure from neotropical floodplain lakes

Abstract – The dynamics of fish assemblages from seven floodplain lakes of Salado River (Argentina) was monthly analysed during two contrasting hydrological seasons. Partial canonical correspondence analysis indicated that assemblage structure was predictably linked to environmental characteristics that varied along temporal and spatial scales. Species distributed differentially along an environmental gradient of temperature, hydrometric level, conductivity, macrophyte cover and transparency in relation to their sensory capabilities (following piscivory‐transparency‐morphometry model) and life history strategies. During high water season, assemblages were associated with temperature and hydrometric level, factors which varied mainly across temporal scales and exhibit a regional range of action. During low waters, assemblage structure correlated with macrophyte cover and transparency, factors that varied fundamentally on spatial scales and have local impact. These results indicate that the determinism of fish assemblages does not vary substantially between hydrometric periods, although the environmental variables affecting fish assemblages and their scale of action are clearly different.     

Fish assemblage shifts and species declines in Alabama, USA streams

Abstract –  Recognition of faunal changes requires long-term monitoring, which is lacking for all but a very few streams. Fish surveys are often focused on single, often imperiled, species. While such studies meet the goals of monitoring single species, assemblage-based data are required for detection of assemblage change and declines in common species, and yet these studies are relatively rare. Assemblage-based data may be important in identifying potential ecosystem problems before the loss of ecosystem function that results from catastrophic biodiversity decline. In 2005–2006, we sampled fishes in three streams in the Chattahoochee River drainage, Alabama in order to assess fish assemblage persistence and individual species declines. To achieve these comparisons we used historic data from two time periods, 1970s and 1995. Although comparisons to historical collections were used conservatively, we found dramatic assemblage shifts over time, even using conservative metrics. Examination of individual species persistence over time in these watersheds uncovered species losses at both the site and stream scale. Metrics of similarity, persistence, and Spearman's rank correlation indicated low similarity of fish assemblages and high species turnover over time. Specifically, cyprinid species have been lost and have been replaced with more cosmopolitan species. Comparison of three time periods allowed the estimation of when assemblages changed through time. Changes in land use, increases in the human population and less overall water availability may be agents of habitat degradation partially responsible for fish faunal changes.     

Implications of spatial variability of fish assemblages for monitoring of Australia's tropical estuaries

1. Although often seen as ideal targets for monitoring environmental change because of their high public profile, fish assemblages rarely appear as indicators in monitoring and reporting. 2. Published data were evaluated to develop a simple approach to quantifying the temporal consistency in assemblage structure suitable for routine monitoring and assessment. Data were examined as catch per unit effort (CPUE) and probability of encounter (PoE), and compared using three approaches with the potential to produce simple indices quantifying the patterns of similarity within an estuary over time: species richness, Bray‐Curtis Similarities and a new approach, DeltaPoE. Indices derived from published data were then tested against a time series of data from two estuarine lakes with a history of fish kills. 3. Multidimensional scaling based on PoE emphasizes the temporal consistency of fish assemblages within estuaries at least as well as one based on mean CPUE while providing operational advantages. Similarities based on PoE were more sensitive to change from ‘natural’ assemblage structure than the simpler indices and showed comparable results with Similarities from (log) CPUE data. The one drawback to Similarities is that their complex statistical formulation often makes them less effective vehicles for reporting and communication. Where this is the case the conceptual simplicity of DeltaPoE and its performance relative to Similarities suggests it is a good candidate from which to develop monitoring indices suitable for routine reporting. 4. The performance of each of the indices were considered against the known fish kills. Species richness tracked the observed changes, an expected outcome in this case because a major impact directly removed species. Both indices based on Similarities also tracked the changes faithfully. Of the two, Similarities based on PoE seemed to react more strongly to assemblage changes. Copyright © 2010 John Wiley & Sons, Ltd.