Assemblage structure and habitat use of fishes in a Central European submontane stream: a patch-based approach

Abstract –  We examined macrohabitat patch level assemblage composition and habitat use patterns of fishes over four seasons in a second-order submontane stream (Danube drainage, Hungary). Rainfall data indicated that our study included both high- and low-water periods, and hence our results may be applicable to broader time scales. Principal component analysis of physical habitat data from 13 macrohabitat patches indicated that these patches represented a riffle-pool continuum. Correspondence analysis of fish assemblage structure data from these patches identified a continuum in assemblage composition that was positively correlated with the habitat continuum. The riffle fauna was dominated by stone loach ( Barbatula barbatula ), whereas chub ( Leuciscus cephalus ) were most abundant in pool patches. We detected little evidence of seasonality in either fish assemblage structure or habitat use. Fish density did not differ significantly among macrohabitat patches in two (summer and autumn 1999) of three seasonal samples, although riffle patches displayed significantly higher fish abundance in late spring 2000. This difference primarily was due to higher abundance of juvenile stone loach in riffles. Two species, stone loach and minnow ( Phoxinus phoxinus ), displayed generalized habitat use patterns, whereas chub and rare species (i.e., gudgeon, Gobio gobio ; dace, Leuciscus leuciscus ; Barbus petenyi ; and burbot, Lota lota ) were significantly over-represented in pool habitats. We hypothesized that pool specialists (i.e., chub and rare species) were responding primarily to the increased depth of these habitats. Nevertheless, our data did not demonstrate the presence of separate pool and riffle habitat guilds. In conclusion, we believe that our understanding of stream fish ecology will be greatly facilitated by use of a 'patch-based approach'.     

Mixed stream channel morphologies: implications for fish community diversity

• 1. Stream classification systems are widely used in stream management and restoration. Whereas the principal morphological types of these classification systems are increasingly recognized for their ecological connections, the roles of intermediate and mixed morphologies are still poorly understood, yet may be biologically significant.
• 2. Twenty‐five stream reaches in north‐western Vermont were classified by channel morphology to determine whether fish community diversity differed among pool‐riffle, mixed (i.e. pool‐riffle/cascade, pool‐riffle/other) and forced pool‐riffle stream morphological groups. Stream reach surveys included cross‐sectional surveys, longitudinal profiles, bed substrate characterization, and fish surveys.
• 3. Three fish community diversity measures were calculated: (1) species richness (S); (2) Shannon–Weaver Index (H′); and (3) Simpson's Index (1/D). Multivariate analysis of covariance (MANCOVA) followed by analysis of variance (ANOVA) were used to explore potential differences in fish diversity among stream morphological groups. Fish diversity was significantly different for all three community diversity measures (P?0.05), with pool‐riffle/cascade morphology consistently exhibiting the greatest fish diversity and forced pool‐riffle the lowest.
• 4. These results suggest that fish community diversity is significantly associated with distinct channel morphologies. Generally, pool‐riffle/cascade and pool‐riffle/other stream morphological groups supported habitats that fostered greater species diversity than more homogeneous and uniform pool‐riffle reaches. The observed patterns of diversity are likely to be the result of habitat patches created by variations in flow and other physical characteristics in reaches of mixed morphologies.
• 5. These results support fish sampling schemes that incorporate morphological heterogeneity, such as proportional‐distance designation. Sampling strategies that focus on homogeneous reaches may underestimate diversity, and misrepresent stream condition when fish community data are used in indices of biological integrity (IBIs). Reaches of mixed stream morphologies should be recognized as areas of biological importance in stream and catchment management and in conservation efforts.

Copyright © 2008 John Wiley & Sons, Ltd.     

基于河流网络体尺度的皖河河源溪流鱼类群落的空间格局

2013年7-8月对大别山皖河河源1～3级溪流的鱼类进行了调查,着重从河流网络体空间尺度研究了鱼类多样性及群落结构的空间格局,探讨了局域栖息地条件和支流空间位置对鱼类群落的影响.1～3级溪流间,鱼类物种数随溪流级别增大显著增多,但个体数无显著变化(P＞0.05);长河、潜水和皖水3条支流间鱼类物种数和个体数均无显著差异(P＞0.05).鱼类物种数受局域栖息地条件(海拔)和支流空间位置(河流级别和下游量级)的联合影响,但鱼类个体数仅受局域栖息地条件(海拔)的影响.不同溪流级别和不同支流间的群落结构均无显著差异(P＞0.05).同物种数类似,鱼类群落结构也受局域过程(海拔)和空间过程(汇合量级和下游量级)的联合影响.本研究表明,总体上皖河河源溪流网络体中的鱼类群落是局域过程和空间过程联合作用的产物.因此,为合理保护和管理皖河河源的溪流鱼类物种,有必要兼顾局域栖息地条件与河流网络连通性的保护和恢复.     

Factors affecting fish assemblage structure during seasonal stream drying

Abstract –  We evaluated fish assemblage structure during stream drying in north west Arkansas in 2002 and 2003. We sampled fish with a seine and backpack electrofisher and measured habitat variables along transects. Linear regression models were selected a priori and ranked according to Akaike's Information Criterion. In 2002, total fish density was negatively related to pool area and maximum depth, and positively related to canopy openness and substrate diversity. Similarly, central stoneroller ( Campostoma anomalum , Rafinesque) and creek chub ( Semotilus atromaculatus , Mitchill) densities were negatively related to maximum pool depth. In 2003, fish species richness was positively related to pool area whereas total fish, central stoneroller, and creek chub densities were negatively related to maximum pool depth. In addition, total fish density was negatively related to substrate diversity. Results indicated that physical factors are important predictors of fish assemblage structure during stream drying. However, differences among response variables between years indicated that the magnitude of stream drying might be critical in intermittent streams.     

Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes

Dibble ED, Pelicice FM. Influence of aquatic plant‐specific habitat on an assemblage of small neotropical floodplain fishes.
Ecology of Freshwater Fish 2010: 19: 381–389. © 2010 John Wiley & Sons A/S Abstract – This study investigated the effects of plant‐specific habitat on the distribution of young and small adult fishes in lagoons of the Upper Paraná River floodplain, Brazil. We compared fish catch per unit effort (CPUE) and species richness and used an indirect gradient analysis to investigate fish‐plant relationships within three aquatic macrophytes beds (Cabomba furcata, Eichhornia azurea, Nymphaea amazonum), and explored microhabitat influence (indexed by eight variables related to physical structure and water quality) on the structure of fish assemblages. Rarefaction analysis was used to compare fish species richness among the vegetated habitats. We captured a total of 1599 fish constituting 23 species, 7 families and 3 orders. Fish CPUE and species richness increased relative to microhabitat structure innate to the macrophytes; higher CPUE and richness were observed in C. furcata beds, a submerged aquatic macrophyte with finely dissected leaves. On the contrary, N. amazonum, a species that provides low microhabitat complexity, harbored fewer individual fish and number of species. Reproduction dynamics, hydrology and the amount of available plant‐generated habitat structure (surface effect) contributed to the disproportionally high number of individuals captured during the dry season. Our data suggest that the microhabitat physical structure (e.g., edge distance, stem density and patch size) provided by macrophyte beds in the lagoons of the Upper Paraná River may play a more important role than physicochemistry (e.g., oxygen, temperature and pH) at mediating distribution patterns of small‐sized fishes.     

Habitat-specific effects of interstitial space between stream substrate particles on the colonization of aquatic organisms

We examined the effects of interstitial space between stream substrate particles on the colonization of aquatic organisms using three types of substrates (gravel, a cobble, and a cobble on gravel) in a riffle and pool of a temperate stream. Significantly greater abundance, wet weight, diversity (H′), taxonomic richness, and evenness of aquatic organisms were found in the riffle than in the pool, and the interstitial space substrate (i.e., a cobble on gravel) had significantly greater abundance, wet weight, and taxonomic richness of aquatic organisms than did the cobble substrate. Of the 13 families observed in the experiments, larval net-spinning caddisfly (Hydropsychidae) dominated the riffle in terms of the abundance and wet weight; chironomid larvae dominated both the riffle and the pool in terms of abundance. Simple main effect tests indicated significant effects of substrate on the abundance and wet weight of larval caddisfly in the riffle, and post hoc tests on substrate in each habitat indicated that the abundance and wet weight of larval caddisfly on interstitial space substrate were significantly greater than those on cobble substrate in the riffle. Our results suggest the importance of interstitial space between stream substrates in riffles to ensure higher colonization rates of aquatic organisms such as larval net-spinning caddisflies characterized as filter feeders.     

Concurrent assessment of fish and habitat in warmwater streams in Wyoming

Abstract  Fisheries research and management in North America have focused largely on sport fishes, but native non-game fishes have attracted increased attention due to their declines. The Warmwater Stream Assessment (WSA) was developed to evaluate simultaneously both fish and habitat in Wyoming streams by a process that includes three major components: (1) stream-reach selection and accumulation of existing information, (2) fish and habitat sampling and (3) summarisation and evaluation of fish and habitat information. Fish are sampled by electric fishing or seining and habitat is measured at reach and channel-unit (i.e. pool, run, riffle, side channel, or backwater) scales. Fish and habitat data are subsequently summarised using a data-matrix approach. Hierarchical decision trees are used to assess critical habitat requirements for each fish species expected or found in the reach. Combined measurements of available habitat and the ecology of individual species contribute to the evaluation of the observed fish assemblage. The WSA incorporates knowledge of the fish assemblage and habitat features to enable inferences of factors likely influencing both the fish assemblage and their habitat. The WSA was developed for warmwater streams in Wyoming, but its philosophy, process and conceptual basis may be applied to environmental assessments in other geographical areas.     

Fish assemblage dynamics in an intermittent river of the northern Australian wet–dry tropics

Intermittent rivers make up a large portion of the global river network and are the dominant river type in northern Australia. Increased pressure is being placed on such systems, and a better understanding of their ecology is needed. We examined, over a 7‐year period, the fish fauna of the intermittent Fergusson River, a major tributary of the Daly River of the northern Australia. Changes in habitat structure with the onset of the dry season involved contraction of the riffle/run/pool habitat to a single refugial pool, the size of which was determined by antecedent wet season hydrology. The fishes present comprised a subset of species present within the Daly River main channel and consisted of the most widely distributed of northern Australia's freshwater fishes. The Fergusson River provides suitable spawning habitat for species during the wet season (e.g. Hephaestus fuliginosus, Leiopotherapon unicolor and Neosilurus catfishes) and during the dry season for a different set of species (e.g. Amniataba percoides, Melanotaenia australis and Glossogobius aureus). Little year‐to‐year variation in assemblage structure was observed early in the dry season, whereas interannual variation in late dry season assemblages was substantial. Dry season recruitment imparted some of the interannual variability in assemblage structure recorded between late dry season samples. Piscivorous fishes were an important, but temporally variable, component of the assemblage present in the late dry season refugial habitat, and predation was potentially another important source of variation in assemblage structure.     

Effects of an extreme flash flood on the native fish assemblages across a Mediterranean catchment

Abstract  The effects of an extreme flash flood on the native fish assemblages across a Mediterranean catchment in Southwest Portugal were investigated. The fish community structure and habitat were surveyed at 10 sites pre- and post-flood. Overall species richness and rank abundances changed little after the flood, despite there being a consistent decline in the abundance of small cyprinids. Pre- and post-flood habitat correlates of abundance changed for at least some species, and variability in assemblage structure was associated with flood, depth and pH. These results indicate that extreme floods occurring early in the wet season may have little disruptive effects on the overall structure of native fish assemblages in Mediterranean streams, although may at least partially influence population dynamics for some species. Habitat quality and complexity are likely to play a role in mediating species responses to flooding.     

Seasonal variation in habitat use by marsh fishes

Abstract— We used I-m² throw traps to examine habitat use by smallsized fishes within a mosaic of wet prairies and sloughs in the headwaters of the St. Johns River, Florida between August 1992 and November 1995. Estimates of total fish density and biomass varied temporally, but did not differ significantly between habitats. Patterns of habitat use, however, differed among the five numerically dominant species. Bluefin killifish, mosquitofish, and golden topminnows were more abundant in sloughs than in wet prairies. In contrast, Everglades pygmy sunfish were more abundant in wet prairies than in sloughs. Finally, the abundance of least killifish did not differ between habitats. Fish densities were positively correlated with plant biomass (i. e., habitat complexity) and negatively correlated with water depth (i. e., hydrology). Species richness and composition were similar among habitats. However, consistent differences in the relative abundance of numerically dominant species between habitats indicated some degree of habitat-specific assemblage structure. Most species were concentrated into deeper sloughs during drying events. This assemblage of small-sized fishes appears to respond relatively rapidly to changes in habitat structure and hydrologic conditions. We therefore recommend that resource managers consider using fishes as indicator taxa to evaluate the efficacy of ongoing restoration and management efforts in wetland systems.     

Associations between stream hydrogeomorphology and co‐dependent mussel–fish assemblages: evidence from an Ohio,USA river system

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Multiple watershed alterations influence fish community structure in Great Plains prairie streams

Stream fish distributions are commonly linked to environmental disturbances affecting terrestrial landscapes. In Great Plains prairie streams, the independent and interactive effects of watershed impoundments and land cover changes remain poorly understood despite their prevalence and assumed contribution to declining stream fish diversity. We used structural equation models and fish community samples from third‐order streams in the Kansas River and Arkansas River basins of Kansas, USA to test the simultaneous effects of geographic location, terrestrial landscape alteration, watershed impoundments and local habitat on species richness for stream‐associated and impoundment‐associated habitat guilds. Watershed impoundment density increased from west to east in both basins, while per cent altered terrestrial landscape (urbanisation + row‐crop agriculture) averaged ~50% in the west, declined throughout the Flint Hills ecoregion and increased (Kansas River basin ~80%) or decreased (Arkansas River basin ~30%) to the east. Geographic location had the strongest effect on richness for both guilds across basins, supporting known zoogeography patterns. In addition to location, impoundment species richness was positively correlated with local habitat in both basins; whereas stream‐species richness was negatively correlated with landscape alterations (Kansas River basin) or landscape alterations and watershed impoundments (Arkansas River basin). These findings suggest that convergences in the relative proportions of impoundment and stream species (i.e., community structure) in the eastern extent of both basins are related to positive effects of increased habitat opportunities for impoundment species and negative effects caused by landscape alterations (Kansas River basin) or landscape alterations plus watershed impoundments (Arkansas River basin) for stream species.     

Fish use of ecohydraulic‐based mesohabitat units in a low‐gradient Illinois stream: implications for stream restoration

• 1. A classification scheme for ecohydraulic‐based mesohabitat units was developed for a summer low‐flow period. Mesohabitat unit designations were based on the integration of three‐dimensional channel hydraulics, geomorphic maintenance processes of bed morphology, and biological resource needs of fish. Ecological relevance of the units was evaluated by a study of fish mesohabitat use patterns, and species relationships to feeding guild. By portraying the stream as a mosaic of hydraulic habitat patches that provide specific biotic resource needs, this study's aim was to advance how ecological information may be incorporated into the stream restoration design process.
• 2. Nine mesohabitat units were designated, including pool‐front, ‐mid, and ‐rear units, scour pool, simple and complex riffles, glide, submerged point bar, and channel expansion marginal deadwater. Physical habitat structure differed among the nine mesohabitat units by length, water depth, and bed slope and complexity. Fish were collected in specific unit volumes by use of prepositioned areal electrofishing devices, in which distinct patterns of fish mesohabitat use were observed.
• 3. A key finding was the differences in fish assemblages among the pool units, in which fish densities were greatest in the pool‐front and scour pool units. Also, fish density in the pool‐front unit was positively correlated with pool entrance slope. Biomass was greatest in the pool‐front and ‐mid units, and it was correlated with maximum mid‐pool depth. Density and biomass were generally lowest in the pool‐rear unit. Other unique relationships were also observed among the mesohabitat units.
• 4. Based on feeding guild, patterns of fish mesohabitat use were observed for this summer low‐flow period; insectivores dominantly used pool‐front and scour pool units, herbivores dominantly used complex riffle units, and piscivores used pool‐front and ‐mid units.
• 5. Useful ecological information was derived from fish species‐habitat relationships observed in this study, linking mesohabitat units with species requirements for food resources. Such findings support advancements to ecological design strategies for stream restoration that promote hydraulic habitat diversity.

Copyright © 2008 John Wiley & Sons, Ltd.     

Fish assemblages structure and function along environmental gradients in rivers of Gabon (Africa)

Abstract –  We examined patterns in fish species assemblages structure and function along environmental gradients in rivers of Gabon. Species presence–absence data from 52 sites were first analysed by canonical correspondence analysis. Results showed that the position of sites along the upstream–downstream gradient, together with elevation and water conductance were the most important predictors of local fish assemblage composition. Assemblage richness and trophic structure were further investigated using regression tree analysis. Results revealed a general increase in species richness from upstream to downstream areas and a transition from insectivorous to omnivorous, herbivorous and piscivorous species along this longitudinal gradient. There were several similarities between these previous patterns and those observed in other temperate streams suggesting a potential convergence in fish assemblage along environmental gradients in tropical and temperate riverine systems. From a conservation standpoint, these results highlight the need to evaluate all habitat types along rivers longitudinal gradient to integrate the full spectrum of species assemblages within conservation plans.     

Evaluating effects of water withdrawals and impoundments on fish assemblages in southern New England streams,USA

Abstract Balancing aquatic conservation and water supply is becoming a major global issue for urban landscapes. The purpose of this study was to evaluate the ecological effects of stream‐flow alterations via water withdrawals and impoundments on fish assemblage structure. Electric fishing data were collected at 33 wadeable streams in Connecticut, located in the Southern New England region of USA. Fish sampling was conducted directly downstream of water withdrawals for municipal and agricultural water supply, and study sites differed in potential water withdrawal rates and the presence of impoundments. Regression analysis showed that water withdrawal rate was more important than other natural and anthropogenic factors (e.g. landcover and stream size) in explaining several fish assemblage metrics. Stream sites with high withdrawal rates were generally characterised by lower proportions of fluvial dependent fishes (fish which need flowing water to complete a portion of their life history) and benthic invertivores (fish which feed on bottom‐dwelling stream insects in riffle habitat), and had a greater percent composition of macrohabitat generalists, particularly members of the family Centrarchidae. Some assemblage metrics responded linearly with increasing magnitude of water withdrawals, but others were non‐linear. Results are consistent with ecological theory that alteration of the natural flow regime will impact stream biota.     

Long-term patterns of microhabitat use by fish in a southern Appalachian stream from 1983 to 1992: effects of hydrologic period, season and fish length

Abstract— We quantified microhabitat use by members of a southern Appalachian stream fish assemblage over a ten-year period that included both floods and droughts. Our study site (37 m in length) encompassed riffle, run and pool habitats. Previous research indicated that species belonged to either benthic or water-column microhabitat guilds. Most species exhibited non-random microhabitat use in all seasons, and benthic and water column species generally were over-represented in the deeper portions of the site. In addition, water column species generally were over-represented in microhabitats with lower average velocities. The majority of seasonal shifts in microhabitat use were passive (i. e. correlated with changes in microhabitat availability), whereas, most shifts associated with hydrological periods appeared to be active responses to changing environmental conditions. Most species exhibited length-related shifts in microhabitat use, which were strongly affected by hydrologic period for four of ten species. Microhabitat use patterns of assemblage members appeared to be a consequence of species-specific responses to changing environmental conditions. The highly flexible patterns of microhabitat use exhibited by these species necessitate that decisions regarding their management be based on data covering a range of environmental conditions.     

Biogeographic freshwater fish pattern legacy revealed despite rapid socio‐economic changes in China

Understanding drivers of freshwater fish assemblages is critically important for biodiversity conservation strategies, especially in rapidly developing countries, which often have environmental protections lagging behind economic development. The influences of natural and human factors in structuring fish assemblages and their relative contributions are likely to change given the increasing magnitude of human activities. To discriminate natural and human drivers of fish diversity and assemblage patterns in developing countries with rapid socio‐economic development, a dataset of 908 freshwater fish species and 13 metrics including three categories of both natural (i.e., biogeographic) and human drivers (i.e., economic growth, inland fisheries) in China were analysed with machine learning algorithms (i.e., self‐organizing map, random forest). Here, we found that biogeographic drivers explained 21.8% of the observed fish assemblage patterns in China and remained stronger predictors when compared to human drivers (i.e., 15.6%, respectively). Freshwater fish species richness was positively correlated to rainfall, air temperature, surface water area and inland fisheries production but negatively correlated with urbanization. In addition, the strong structuring effects of climatic variables on Chinese fish richness patterns suggested that the fish assemblages could be particularly vulnerable to climate change. Our results showed that natural biogeographic factors still dominate in driving freshwater fish assemblage patterns despite increased human disturbances on aquatic ecosystems in a rapidly developing country. These findings consequently suggested that we should consider both natural (e.g., climate) and human (e.g., urbanization, inland fisheries) factors when establishing aquatic conservation strategies and priorities for developing countries that are experiencing rapid socio‐economic changes.     

Dependence of fish on subtropical riverine mangroves as habitat in the Ryukyu Islands,Japan

To examine whether fish were dependent on mangrove habitat in the Ryukyu Islands (southern Japan), fish assemblage structures were compared on the downstream side between mangrove-rich and mangrove-free rivers on Ishigaki and Okinawa Islands in 2014 and 2015. The mean species richness and abundance of fish were significantly higher in mangrove-rich rivers than in mangrove-free rivers. Mangrove-related food feeders (e.g., benthic invertebrate and detritus) were more abundant in mangrove-rich than mangrove-free rivers while mangrove-unrelated food feeders (e.g., zooplankton feeders) showed no difference between river types. Cluster and ordination analyses demonstrated that fish assemblage structures were clearly different between mangrove-rich and mangrove-free rivers. Of all of the fish species collected (88 species), half of the species (45 species, 51%) occurred exclusively in the mangrove-rich rivers, 9 species (10%) in the mangrove-free rivers and 34 species (39%) were common in both types of rivers. Commercially important fish (e.g., Lutjanus fulvus and L. argentimaculatus) showed greater abundance of juveniles in mangrove-rich rivers than in the mangrove-free rivers, indicating that mangrove-rich rivers can provide important habitat for a variety of fish, including those commercially important to fisheries.     

Restricted movement of prairie fishes in fragmented riverscapes risks ecosystem structure being ratcheted downstream

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