Modelling functional fish habitat connectivity in rivers: A case study for prioritizing restoration actions targeting brown trout

1. Throughout the world, decreased connectivity of fluvial habitats caused by artificial river channel alterations such as culverts, weirs and dykes is seen as an important threat to the long‐term survival of many aquatic species. In addition to assessing habitat quality and abundance, wildlife managers are becoming increasingly aware of the importance of taking into account habitat connectivity when setting priorities for restoration. In this paper, a new approach of spatial analysis adapted to rivers and streams is proposed for modelling 2D functional habitat connectivity, integrating distance, costs and risk of travelling between habitat patches (e.g. daily use, spawning, refuge) for particular fish species, size classes and life stages.
2. This approach was applied to a case study in which brown trout (Salmo trutta) habitat accessibility was examined and compared under various scenarios of stream restoration in a highly fragmented stream in Ile‐de‐France. Probabilities of reaching spawning habitats were estimated from a trout‐populated area located downstream of the barriers and from potential daily‐use habitat patches across the stream segment.
3. The approach successfully helped prioritize restoration actions by identifying options that yield the greatest increase in accessible spawning habitat areas and connectivity between spawning habitat and daily‐use habitat patches. This case study illustrates the practical use of the approach and the software in the context of river habitat management.

     

Comparison of population dynamics of Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) in a small tributary of the River Scorff (Brittany, France)

The population dynamics of Atlantic salmon (Salmo salar L.) and brown trout (Salmo trutta L.) were compared in a small tributary of the River Scorff (Brittany, France) from spawning time to the beginning of the third growing season. The spawning and fry emergence of the two species took place at approximately the same time. In the first autumn, the densityof 0+ juveniles and settling rate from the egg stage were much higher in trout than in salmon. The emigration rate from 0+ population was much higher in trout than in salmon. The size of resident and migrating fish was always smaller in salmon than in trout, whatever the age. The low level of salmon production in the brook, compared with trout, was the result of low survival from egg to 0+ stage in autumn, combined with the small proportion of juveniles migrating after the first growing season. This was not compensated by a high number of migrants the next year. The role of physical habitat, inter-and intraspecific competition, predation and migration dependence on size and early sexual maturity is discussed. Indications are that small tributaries of the type studied are of great value for recruitment in trout but not very productive for juvenile salmon.     

Broad‐scale habitat classification variables predict maximum local abundance for native but not non‐native trout in New York streams

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Use of first‐order tributaries by brown trout (Salmo trutta) as nursery habitat in a cold water stream network

Many investigators have examined the importance of suitable in‐stream habitat and flow regime to salmonid fishes. However, there is much less known about the use of small (<5 l·s^?1 discharge) first‐order streams within a larger stream network by salmonids. The purpose of this study was to evaluate the use of small headwater streams by juvenile brown trout Salmo trutta in the Emmons Creek stream network in Wisconsin, USA, and to determine whether abundance was related to habitat variables in these streams. Fishes in eight spring‐fed first‐order streams were sampled during a 7‐month period using a backpack electroshocker and measured for total length. Habitat variables assessed included stream discharge, water velocity, sediment composition and the abundance of cover items (woody debris and macrophytes). Densities of YOY trout ranged from 0 to 1 per m² over the course of the study and differed among first‐order streams. Stepwise multiple regression revealed discharge to be negatively associated with trout density in spring but not in summer. All other habitat variables were not significantly related to trout density. Our results demonstrate the viability of small first‐order streams as nursery habitat for brown trout and support the inclusion of headwater streams in conservation and stream restoration efforts.     

Country‐wide analysis of large wood as a driver of fish abundance in Swedish streams: Which species benefit and where?

1. Rivers are heavily affected by human impacts that threaten many fish species. Among restoration measures, the addition of large wood (LW) in streams has been shown to increase fish abundance, yet which species benefit from LW, to what extent relative to other drivers, and which factors influence LW quantity is not clear, and these uncertainties limit our ability to use LW as an effective restoration measure.
2. Here, a time series (from 1993 to 2016) of electrofishing data, including 3641 streams across Sweden, was used to investigate the beneficial effects of LW on the abundance of juvenile brown trout, Salmo trutta, juvenile Atlantic salmon, Salmo salar, and juvenile and adult sculpins, Cottus gobio and Cottus poecilopus, while accounting for other abiotic and biotic factors, and the drivers of LW abundance at a country‐wide scale.
3. Large wood benefitted brown trout, and the effects were greater with decreasing shaded stream surface. LW effects were comparable in magnitude to the positive effects of average annual air temperature and the negative effects of stream depth and predator abundance – factors where the influence was second only to the negative effects of stream width. LW did not benefit salmon abundance, which was correlated positively with stream width and negatively with altitude, nor did it benefit sculpin abundances, which mainly decreased with annual average air temperature and altitude.
4. The quantity of LW strongly diminished with stream width, and, to a lesser extent, with stream depth, altitude, annual average air temperature, and forest age, whereas it increased with stream velocity, slope, and forest cover.
5. The results suggest that LW can be used as an effective restoration tool for brown trout in shallow and narrow streams, especially in areas with little shade. Here, the addition of LW may help to alleviate the impacts of forest clearance and climate change.

     

Parr dispersal between streams via a marine environment: A novel mechanism behind straying for anadromous brown trout?

Otolith Sr:Ca profiles demonstrated that juvenile anadromous brown trout (ABT) Salmo trutta may descend to the brackish waters of the Baltic Sea from their natal streams as parr or fry and then migrate into non‐natal streams before transforming into smolt. To our knowledge, no such published documentation exists for ABT. The ecological significance of this life‐history strategy is presently not clear. However, stream shifting through the marine environment should to be considered with regard to stock management and the assessment and restoration of salmonid populations and their potential habitats.     

The effect of competition among three salmonids on dominance and growth during the juvenile life stage

Although non‐native species can sometimes threaten the value of ecosystem services, their presence can contribute to the benefits derived from the environment. In the Great Lakes, non‐native brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) support substantial recreational fisheries. With current efforts underway to restore once‐native Atlantic salmon (Salmo salar) to Lake Ontario, there is some concern that Atlantic salmon will impede non‐native contributions to the recreational fishery because Atlantic salmon exhibit niche overlap with brown trout and rainbow trout, particularly during the juvenile life stage. We therefore examined competition and growth of juvenile Atlantic salmon, brown trout and rainbow trout in semi‐natural streams. We found that brown trout were the most dominant and had the greatest growth rate regardless of what other species were present. Rainbow trout were more dominant than Atlantic salmon and consumed the most food of the three species. However, in the presence of brown trout, rainbow trout fed less frequently and exhibited negative growth as compared to when the rainbow trout were present with only Atlantic salmon. These data suggest that, outside of density‐dependent effects, Atlantic salmon will not impact stream production of brown trout and rainbow trout.     

Density of juvenile brown trout and Atlantic salmon in natural and man-made riverine habitats

The density of juvenile brown trout (Sulmo trutta L.) and Atlantic salmon (Salmo salar L.) was significantly higher along river bank areas protected against erosion than along natural river banks in the River Gaula, Central Norway. A habitat shift appeared in Atlantic salmon, and a behavioural shift was demonstrated by brown trout from August October. The effect of habitat on densities of juvenile salmonids should be taken into account as mitigation measures on eroded river banks and when assessing fish production in rivers.     

Impact of origin and condition of host fish (Salmo trutta) on parasitic larvae of Margaritifera margaritifera

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Distribution modelling to guide stream fish conservation: an example using the mountain sucker in the Black Hills National Forest,USA

• 1. Conservation biologists need tools that can utilize existing data to identify areas with the appropriate habitat for species of conservation concern. Regression models that predict suitable habitat from geospatial data are such a tool. Multiple logistic regression models developed from existing geospatial data were used to identify large‐scale stream characteristics associated with the occurrence of mountain suckers (Catostomus platyrhynchus), a species of conservation concern, in the Black Hills National Forest, South Dakota and Wyoming, USA.
• 2. Stream permanence, stream slope, stream order, and elevation interacted in complex ways to influence the occurrence of mountain suckers. Mountain suckers were more likely to be present in perennial streams, and in larger, higher gradient streams at higher elevations but in smaller, lower gradient streams at lower elevations.
• 3. Applying the logistic regression model to all streams provided a way to identify streams in the Black Hills National Forest most likely to have mountain suckers present. These types of models and predictions can be used to prioritize areas that should be surveyed to locate additional populations, identify stream segments within catchments for population monitoring, aid managers in assessing whether proposed forest management will potentially have impacts on fish populations, and identify streams most suitable for stream rehabilitation and conservation or translocation efforts.
• 4. When the effect of large brown trout (Salmo trutta) was added to the best model of abiotic factors, it had a negative effect on the occurrence of mountain suckers. Negative effects of brown trout on the mountain sucker suggest that management of recreational trout fisheries needs to be balanced with mountain sucker conservation in the Black Hills. However, more spatially explicit information on brown trout abundance would allow managers to understand where the two species interact and where recreational fisheries need to be balanced with fish conservation.

Copyright © 2008 John Wiley & Sons, Ltd.     

Linking habitat characteristics with juvenile density to quantify Salmo salar and Salmo trutta smolt production in the river Sävarån,Sweden

Abstract Habitat mapping along 85 km of river was related to juvenile (15 years of electric fishing) and smolt (3 years of screw‐trapping) abundance data to estimate salmon, Salmo salar L., and sea trout, Salmo trutta L., smolt production in the River Sävarån, northern Sweden. Spawning site selection by radio‐tagged salmon (n = 12) and sea trout (n = 4) was also assessed. Fifty‐one hectares of potential spawning and nursery habitat was found in the main stem river, representing 25% of the total river area. These areas were estimated to yield 1300–7580 salmon and 630–3540 sea trout smolts based on juvenile densities, equating with 3 years of screw‐trap data (2990–5080 salmon and 680–2520 trout smolts, respectively). A hypothetical maximum production of about 19 900 salmon smolts was predicted for the river at a density of 40, 0+ salmon 100 m^?2. Tracking adults during the spawning period identified optimal and potential reproductive areas.     

Failure of predator conditioning: an experimental study of predator avoidance in brown trout (Salmo trutta)

Many studies have documented that hatchery‐reared salmonids generally have inferior survival after being stocked compared with wild conspecifics, hatchery and wild salmonids have been observed to differ in their antipredator responses. The response of brown trout (Salmo trutta) juveniles (0+) of differing backgrounds to a live predator was compared in two experiments. First, the antipredator behaviour of predator‐naïve hatchery‐reared brown trout and wild‐exposed brown trout were assessed in behavioural trials which lasted for eight days. Second, predator‐naïve and predator‐conditioned hatchery‐reared brown trout were assessed in identical behavioural trials. Brown trout were ‘predator‐conditioned’ by being held in a stream‐water aquarium with adult Atlantic salmon (Salmo salar) and adult brown trout for two days prior to behavioural trials. Predator‐conditioned hatchery‐reared brown trout spent more time in shelters in the trial aquaria than predator‐naïve hatchery‐reared fish, but did not differ in time spent in the predator‐free area. Predator conditioning may account for the increased time spent in the shelter, but does not appear to have affected time spent in the predator‐free area. However, even if significant alteration in behaviour can be noted in the laboratory, the response might not be appropriate in the wild.     

Ontogenetic and spatial variations in brown trout habitat selection

Ayllón D, Almodóvar A, Nicola GG, Elvira B. Ontogenetic and spatial variations in brown trout habitat selection.
Ecology of Freshwater Fish 2010: 19: 420–432. © 2010 John Wiley & Sons A/S Abstract – Habitat quality and quantity determine many biological processes and traits that directly affect the population dynamics of stream fishes. Understanding how habitat selection is adjusted to different ecological conditions is essential to improve predictive modelling of population dynamics. We describe brown trout Salmo trutta summer habitat selection patterns through univariate and multivariate habitat selection functions across defined river reach typologies. We sampled 44 sites and performed a principal component analysis that defined eight reach types differing in both local site and catchment‐scale physical features. We observed ontogenetic changes in habitat selection, as trout preferred deeper and slower flowing water as they increased in size. Likewise, selectivity for different types of structural habitat elements changed through ontogeny. Both patterns were consistent across reach types. Moreover, we detected spatial variations in habitat selection patterns within age‐classes among different reach types. Our results indicate that brown trout is a habitat generalist and suggest that spatial variations in habitat selection patterns are driven by physical and environmental factors operating at multiple spatial scales.     

Potential for reintroduction of lake sturgeon in five northern Lake Michigan tributaries: a habitat suitability perspective

• 1. Conservation and rehabilitation efforts for lake sturgeon Acipenser fulvescens throughout the Great Lakes include the re‐establishment of self‐sustaining stocks in systems where they have been extirpated.
• 2. Information on the suitability of potential lake sturgeon habitat in tributaries is important for determining their capacity to support lake sturgeon stocking and to develop system‐specific rehabilitation strategies.
• 3. Geo‐referenced habitat information characterizing substrate composition, water depth, and stream gradient were applied to a life‐stage specific lake sturgeon habitat suitability index in a geographic information system to produce spatially explicit models of life‐stage specific habitat characteristics in five northern Lake Michigan tributaries from which lake sturgeon have been extirpated.
• 4. Habitat models indicated that high quality lake sturgeon spawning and staging habitat comprised 0 to 23% and 0 to 9% of the available habitat, respectively, whereas high quality juvenile lake sturgeon habitat was relatively ubiquitous throughout each river and comprised 39 to 99%.
• 5. Comparison of these data to lake sturgeon habitat availability in Lake Michigan tributaries currently supporting populations indicated that spawning and staging habitats may limit the ability of these systems to support spawning. Efforts to re‐establish lake sturgeon populations in these systems should consider the creation of spawning and staging habitat to increase reproductive and recruitment potential prior to the initiation of stocking efforts.

Copyright © 2007 John Wiley & Sons, Ltd.     

Projected impacts of climate change on stream salmonids with implications for resilience‐based management

The sustainability of freshwater fisheries is increasingly affected by climate warming, habitat alteration, invasive species and other drivers of global change. The State of Michigan, USA, contains ecologically, socioeconomically valuable coldwater stream salmonid fisheries that are highly susceptible to these ecological alterations. Thus, there is a need for future management approaches that promote resilient stream ecosystems that absorb change amidst disturbances. Fisheries professionals in Michigan are responding to this need by designing a comprehensive management plan for stream brook charr (Salvelinus fontinalis), brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) populations. To assist in developing such a plan, we used stream‐specific regression models to forecast thermal habitat suitability in streams throughout Michigan from 2006 to 2056 under different predicted climate change scenarios. As baseflow index (i.e., relative groundwater input) increased, stream thermal sensitivity (i.e., relative susceptibility to temperature change) decreased. Thus, the magnitude of temperature warming and frequency of thermal habitat degradation were lowest in streams with the highest baseflow indices. Thermal habitats were most suitable in rainbow trout streams as this species has a wider temperature range for growth (12.0–22.5 °C) compared to brook charr (11.0–20.5 °C) and brown trout (12.0–20.0 °C). Our study promotes resilience‐based salmonid management by providing a methodology for stream temperature and thermal habitat suitability prediction. Fisheries professionals can use this approach to protect coldwater habitats and drivers of stream cooling and ultimately conserve resilient salmonid populations amidst global change.     

Issues for the conservation and management of Falkland Islands freshwater fishes

• 1. The Falkland Islands, in the cool‐temperate south‐western Atlantic Ocean, have an impoverished freshwater fish fauna, with only two indigenous species certainly present there: the Falklands minnow, Galaxias maculatus, and the zebra trout, Aplochiton zebra. Additional species whose presence there is uncertain are the southern pouched lamprey, Geotria australis, and the Patagonian puyen, Galaxias platei. Brown trout, Salmo trutta, were introduced in the mid‐20th century, and sea‐migratory (diadromous) populations are widespread.
• 2. Distributions of zebra trout and brown trout, particularly, are complementary, suggesting that brown trout are having detrimental impacts on zebra trout. Zebra trout have suffered massive decline over the past few decades and remain largely in restricted areas that brown trout have not yet invaded.
• 3. Owing to their sea‐migratory habits, it can be expected that brown trout will eventually invade all significant streams on the Falkland Islands. This raises issues of serious concern since zebra trout are also probably sea‐migratory, and therefore need access to and from the sea to complete their life cycles. Therefore, any streams accessible to zebra trout are potentially accessible also to brown trout, raising the spectre that eventually brown trout will invade all the streams where zebra trout persist.
• 4. The existence of landlocked populations of zebra trout provides some form of protection from brown trout invasion, though a landlocked stock does not represent the full behavioural and genetic diversity of zebra trout in Falkland's waters, and must be regarded as a last resort means for conservation.

Copyright © 2001 John Wiley & Sons, Ltd.     

Characteristics and rehabilitation of the spawning habitats of the sea trout, Salmo trutta, in Gotland (Sweden)

Characteristics of the natural spawning habitat of sea trout, Salmo trutta L., were studied in Själsöån, a small stream of Gotland, Sweden, from 1992 to 1999. Each year, trout spawned on 17 ± 7 different areas (156 places ha^?1). Most of the spawning grounds were used every year. Overcutting was evident for at least 60% of the spawning grounds. Fish spawned on a gravel of 19 ± 7 mm in diameter. From 1978 to 1992, 242 artificial spawning grounds were constructed by the Gotland Sport Fishermen Association in four Gotland streams. A sediment trap was dug upstream to the spawning grounds. The artificial spawning ground comprised of a downstream V‐shape stream deflector of large stones with a log weir at the narrowest point of the deflector. Upstream of the dam, 15–60 mm diameter gravel was deposited to constitute the spawning ground substratum. To keep the installation efficient, maintenance is needed every year before the spawning season.     

Addition of structural complexity – contrasting effect on juvenile brown trout in a natural stream

In a field experiment, we examined the effects of structural complexity in the form of added artificial plastic plants and shredded plastic bags on growth and abundance of juvenile brown trout (Salmo trutta). Just after emergence, the added complexity had a positive effect on the density, biomass and condition factor of young‐of‐the‐year (0+) brown trout. This difference in density was not present six weeks later. In contrast, both young‐of‐the‐year and older brown trout generally tended to be larger in the simple habitat. Hence, our data suggest that increased complexity initially is beneficial for young‐of‐the‐year individuals probably due to lower risk of predation and increased densities of prey. However, as density increases in the complex environment, it may induce negative density‐dependent effects, here reflected in smaller sized fish in the complex environment. This might force fish to redistribute to habitats with lower densities of conspecifics as they grow larger. We propose that habitat complexity can increase survival of yearlings in early phases and thereby also affect the overall population structure of brown trout in natural streams.     

Experimental provision of large woody debris in streams as a trout management technique

• 1. The natural stock of large woody debris (LWD) in the afforested Douglas River (Fermoy, Co. Cork) is very low relative to old‐growth forests, which seems to arise from deficiency both of supply and retention. Woody debris is important to the ecology and physical structure of forest streams, so its abundance is relevant to aquatic conservation and the maintenance and size of salmonid fish stocks.
• 2. The physical characteristics and fish stocks of 16 contiguous segments of two 200 m stream reaches were surveyed in spring 1998 prior to the installation of 12 partially spanning debris structures on four of the segments. This study investigated the effect of debris structures on the heterogeneity of flow and substratum, and the distribution of brown trout (Salmo trutta), and assessed the potential use of woody debris manipulation as a tool in the management of forest streams.
• 3. Surveys of stream habitat conditions over a 2 year period following the installation of woody debris showed a change in stream architecture. This created more suitable habitat for trout through development of additional pools in which beds of fine sediment developed, and constraining the main current, increasing the amount of eddies and slack water areas.
• 4. There were significant increases in trout density and biomass in the debris segments relative to control segments without debris dams 1 and 2 years after debris addition, although trout condition was not modified by the addition of LWD. These results suggest that the addition of woody debris offers a positive and practical management technique for enhancing fish in plantation forest streams.

Copyright © 2002 John Wiley & Sons, Ltd.     

A review of ecological models for brown trout: towards a new demogenetic model

Abstract – Ecological models for stream fish range in scale from individual fish to entire populations. They have been used to assess habitat quality and to predict the demographic and genetic responses to management or disturbance. In this paper, we conduct the first comprehensive review and synthesis of the vast body of modelling literature on the brown trout, Salmo trutta L., with the aim of developing the framework for a demogenetic model, i.e., a model integrating both population dynamics and genetics. We use a bibliometric literature review to identify two main categories of models: population ecology (including population dynamics and population genetics) and population distribution (including habitat–hydraulic and spatial distribution). We assess how these models have previously been applied to stream fish, particularly brown trout, and how recent models have begun to integrate them to address two key management and conservation questions: (i) How can we predict fish population responses to management intervention? and (ii) How is the genetic structure of fish populations influenced by landscape characteristics? Because salmonid populations tend to show watershed scale variation in both demographic and genetic traits, we propose that models combining demographic, genetic and spatial data are promising tools for improving their management and conservation. We conclude with a framework for an individual‐based, spatially explicit demogenetic model that we will apply to stream‐dwelling brown trout populations in the near future.