Seasonal patterns of downstream movement in partially migratory stream‐dwelling Dolly Varden

Migration is a common behaviour among salmonids, but not all individuals within a population migrate, instead becoming residents and remaining in their natal streams. This phenomenon, known as “partial migration,” is well studied among sea‐run and lake‐run populations; however, the lower migratory benefits and costs for mainstem‐run individuals question whether the same mechanisms can be applied for stream‐dwelling salmonids. In this study, we investigated main stem‐run timing and body condition of partially migratory stream‐dwelling Dolly Varden charr (Salvelinus malma) in the Shiisorapuchi River in central Hokkaido, Japan. Based on commonly observed patterns in sea‐run and lake‐run salmonids, we predicted that migration would occur during spring and consist predominantly of age 1 +  females with some small subordinate males. Traps were placed at the mouths of two small tributaries along the Shiisorapuchi River periodically from May to December 2015. Adipose fin samples were taken for DNA to sex the individuals. Consistent to initial predictions, downstream movement occurs only once in the spring, dominated by age‐1 +  females. Trapped fishes (presumed migrants) were slightly longer but slimmer compared to the fish caught in the tributaries (presumed resident), which may be equivalent to smolts in anadromous populations. Regardless of migratory habitat, mechanisms driving partial migration in salmonids may be the same as long as production between natal stream and feeding habitats is significantly different.     

Fish species composition and host fish density in streams of the thick‐shelled river mussel (Unio crassus) – implications for conservation

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Parr dispersal between streams via a marine environment: A novel mechanism behind straying for anadromous brown trout?

Otolith Sr:Ca profiles demonstrated that juvenile anadromous brown trout (ABT) Salmo trutta may descend to the brackish waters of the Baltic Sea from their natal streams as parr or fry and then migrate into non‐natal streams before transforming into smolt. To our knowledge, no such published documentation exists for ABT. The ecological significance of this life‐history strategy is presently not clear. However, stream shifting through the marine environment should to be considered with regard to stock management and the assessment and restoration of salmonid populations and their potential habitats.     

Response of juvenile Chinook salmon to managed flow: lessons learned from a population at the southern extent of their range in North America

Fourteen years (1996–2009) of juvenile Chinook salmon, Oncorhynchus tschawytscha (Walbaum), migration data on the regulated Stanislaus River, California, USA were used to evaluate how survival, migration strategy and fish size respond to flow regime, temperature and spawner density. An information theoretic approach was used to select the best approximating models for each of four demographic metrics. Greater cumulative discharge and variance in discharge during the migration period resulted in higher survival indices and a larger proportion of juveniles migrating as pre‐smolts. The size of pre‐smolt migrants was positively associated with spawner density, whereas smolt migrant size was negatively associated with temperature and positively associated with discharge. Monte Carlo techniques indicated high certainty in relationships between flow and survival, but relationships with juvenile size were less certain and additional research is needed to elucidate causal relationships. Flow is an integral part of the habitat template many aquatic species are adapted to, and mismatches between flow and life history traits can reduce the success of migration and the diversity of migratory life history strategies. The analyses presented here can be used to assist in the development of flow schedules to support the persistence of salmon in the Stanislaus River and provide implications for populations in other regulated rivers with limited and variable water supply.     

Elemental fingerprinting in otoliths reveals natal homing of anadromous Baltic Sea pike (Esox lucius L.)

We examined the element pattern in the otoliths of a migratory fish species that inhabit the coastal areas in the brackish of the Baltic Sea. The northern pike (Esox lucius) show migratory behaviour, spawning in streams and rivers and foraging in the sea. We examined spawning migration in four nearby streams in the south‐west part of the Baltic. Otolith analysis by microPIXE revealed unique elemental patterns (Sr, Zn, Br, Co and Mn) for the juveniles in each of the different streams. The strontium signal in the otolith of the juveniles was used as an indicator of freshwater origin and the time spent in the stream. Adult pike in their migrating spawning phase were caught in each of the streams. The elemental composition in otoliths in their freshwater phase (using juvenile pike in the streams as references) was determined. A principal component analysis showed that the elemental fingerprint during the freshwater phase several years back in time was similar for the adult fish and for juveniles inhabiting the stream today. The results indicated natal homing of the adults to a specific stream, a conclusion that was strengthened by the fact that marked fish returned to spawn over consecutive years. Anadromous pike in the Baltic Sea may thus be divided in subpopulations. The results of the study may have implications for fishery management, as pike in the Baltic Sea cannot be seen as homogenous population.     

Reliance on lakes by salmon,trout and charr (Oncorhynchus,Salmo and Salvelinus): An evaluation of spawning habitats,rearing strategies and trophic polymorphisms

Salmonid fishes may reside within or migrate between stream and lake habitats, or undergo anadromous migrations between freshwater and the ocean. While the degree of anadromy of salmonids has been thoroughly compared, no analogous review has examined the degree of lake use. To assess the extent of reliance on lake habitat in this family, we considered 16 species of salmon, trout and charr from the genera Oncorhynchus, Salmo and Salvelinus, comparing their (a) use of lakes as spawning habitat, (b) rearing strategies in lakes, and (c) occurrence and diversity of lacustrine trophic polymorphism. In identifying the primary life‐history patterns of each species and exploring the lesser‐known lacustrine behaviours, we found that the extent of reliance on lakes exhibits a negative association with the degree of anadromy. Oncorhynchus rely least on lakes, Salmo to an intermediate level and Salvelinus the most, opposite of the general prevalence of anadromy among these genera. Lakes are critical to adfluvial and lake‐resident salmonids, but they also support anadromous and fluvial life histories by providing spawning, rearing, overwintering and/or summer refuge habitat. Adfluviality, although a non‐anadromous life history, consists of similar migration‐related traits and behaviours as anadromy, including the parr–smolt transformation, sex‐biased patterns of migration and residency, and the presence of precocious males. Lakes support life‐history variants, reproductive ecotypes and trophic morphs unique to lacustrine habitat. Therefore, conservation of salmonids is dependent on maintaining the diversity and quality of their habitats, including lakes.     

Assessing connectivity patterns among management units of the Newfoundland and Labrador shrimp population

The Eastern Canadian northern shrimp population, representing one of the most important fisheries in the region, decreased dramatically since the mid‐2000s to a historical low in 2017, but changes were not spatially uniform. Applying a biophysical model within Newfoundland and Labrador (NL) management areas, we investigated connectivity processes during the long pelagic larval phase (2–3 months) of Pandalus borealis and key drivers of larval dispersal in different environmental conditions. We selected 3 years representative of contrasting North Atlantic Oscillation (NAO) phases to assess potential larval dispersal patterns of the northern shrimp population in NL, and hierarchically assessed the impact of the timing of release (yearly and daily), release location, and vertical migration behaviour on shrimp larval dispersal. Overall, we found that populations located on the northern Newfoundland and Labrador shelf supplied potential settlers to southern populations because of the dominant Labrador Current. Ocean circulation and current velocities during the NAO positive year differed from other years, generating contrasting settlement spatial patterns. Larval release location and vertical migration behaviour were the two most important influences on the strength of larval supply and settlement patterns. Inclusion of diel and ontogenic swimming behaviour increased settlement success of larvae released from inshore areas, regardless of study years. Our study improves understanding of northern shrimp stock‐recruitment relationships, their sensitivity to changing environmental conditions, and spatially non‐homogeneous population decline for bentho‐pelagic species with a long larval phase, which could potentially help improve management strategies.     

Competitive release modifies the impacts of hydrologic alteration for a partially migratory stream predator

Understanding ecological effects of altered stream flows is an essential objective. In a comparative field study of juvenile steelhead trout (Oncorhynchus mykiss) that compared natural‐ and reduced‐flow sites, we used mark–recapture modelling and information theory to quantify spatially and temporally explicit patterns of density, specific growth rate, survival and outmigration; and test predictions for biotic and abiotic drivers. Densities were lower in water withdrawal treatments, resulting in lower intraspecific competition and, higher specific growth rate and survival. We observed yearly differences in density and intraspecific competition, with a negative relationship between density and specific growth rate over a wide range of densities, but reductions in survival only at the highest densities. Moreover, individual variability within sites was important. At high density (sites and years), survival related negatively to body size. In contrast, when overall density was lower, specific growth rate was negatively related to body size. Lastly, individuals were more likely to outmigrate when they had larger body size, lower survival or reared in habitats with reduced flows, and these patterns appeared mediated by the intensity of intraspecific competition. Our results underscore the harsh bioenergetic conditions induced by higher temperatures and densities during summer baseflow (relative to other seasons), particularly for larger fish demanding more resources, and suggest a density‐dependent mechanism for why this period is important for regulating salmonid populations. We found that a complex combination of natural (e.g., density) and anthropogenic (e.g., withdrawal) factors affected juvenile salmon populations and life history expression in the face of altered flows.     

Seasonal floodplain‐tidal slough complex supports size variation for juvenile Chinook salmon (Oncorhynchus tshawytscha)

Population diversity is a mechanism for resilience and has been identified as a critical issue for fisheries management, but restoration ecologists lack evidence for specific habitat features or processes that promote phenotypic diversity. Since habitat complexity may affect population diversity, it is important to understand how population diversity is partitioned across landscapes and among populations. In this study, we examined life history diversity based on size distributions of juvenile Central Valley Chinook salmon (Oncorhynchus tshawytscha) within the Yolo Bypass, a remnant transitional habitat from floodplain to tidal sloughs in the upper San Francisco Estuary (SFE). We used a generalized least squares model with an autoregressive (AR1) correlation structure to describe the distribution of variation in fish size from 1998 to 2014, and tested the effect of two possible drivers of the observed variation: (i) environmental/seasonal drivers within the Yolo Bypass, and (ii) the juvenile Chinook source population within the Sacramento River and northern SFE. We found that the duration of floodplain inundation, water temperature variation, season, and sampling effort influenced the observed time‐specific size distribution of juvenile Chinook salmon in the Yolo Bypass. Given the lack of seasonally inundated habitat and low thermal heterogeneity in the adjacent Sacramento River, these drivers of juvenile size diversification are primarily available to salmon utilizing the Yolo Bypass. Therefore, enhancement of river floodplain‐tidal slough complexes and inundation regimes may support the resilience of imperiled Central Valley Chinook salmon.     

Migratory salmon smolts exhibit consistent interannual depensatory predator swamping: Effects on telemetry‐based survival estimates

Migrations of juvenile salmon smolts are generally high‐risk, with predation often implicated in reduced survival. In theory, smolts can maximise survival via depensation, or synchronising movements to swamp predators. Depensation, however, is difficult to assess in the wild. Accounting for depensation could also generate more realistic telemetry‐based survival estimates for management. Here, we assess six years (2010–2014, 2016) of acoustic telemetry and outmigration density data for sockeye salmon (Oncorhynchus nerka) from Chilko Lake, British Columbia, Canada. Prevoiusly, depensation for this population wasassessed for a single year, but interannual consistency is not known. We found evidence of depensation in each year, although its strength varied. In addition, by integrating depensation with outmigration densities, annual population‐level survival estimates in this initial (14‐km) migratory segment increased by 0.02–0.24 relative to previously published estimates. However, when extending these survival rates from the first 14 km through the entire tracked migration (1,044 km), increases in estimates were small (~0.01). Potential conservation and management applications of depensation include implications for recovering imperiled populations and informing hatchery release strategies.     

Diverse juvenile life‐history behaviours contribute to the spawning stock of an anadromous fish population

Habitat quality often varies substantially across space and time, producing a shifting mosaic of growth and mortality trade‐offs across watersheds. Traditional studies of juvenile habitat use have emphasised the evolution of single optimal strategies that maximise recruitment to adulthood and eventual fitness. However, linking the distribution of individual behaviours that contribute to recruitment at the population level has been elusive, particularly for highly fecund aquatic organisms. We examined juvenile habitat use within a population of sockeye salmon (Oncorhynchus nerka) that spawn in a watershed consisting of two interconnected lakes and a marine lagoon. Otolith microchemical analysis revealed that the productive headwater lake accounted for about half of juvenile growth for those individuals surviving to spawn in a single river in the upper watershed. However, 47% of adults had achieved more than half of their juvenile growth in the downstream less productive lake, and 3% of individuals migrated to the estuarine environment during their first summer and returned to freshwater to overwinter before migrating back to sea. These results describe a diversity of viable habitat‐use strategies by juvenile sockeye salmon that may buffer the population against poor conditions in any single rearing environment, reduce density‐dependent mortality and have implications for the designation of critical habitat for conservation purposes. A network of accessible alternative habitats providing trade‐offs in growth and survival may be important for long‐term viability of populations.     

Juvenile coho salmon movement,growth and survival in a coastal basin of southern Oregon

Juvenile salmonids display highly variable spatial and temporal patterns of early dispersal that are influenced by density‐dependent and density‐independent factors. Although juvenile coho salmon (Oncorhynchus kisutch) movement patterns in streams and their relationship with body mass and growth have been examined in previous studies, most observations were limited to one season or one stream section. In this study, we monitored the movement of juvenile coho salmon throughout their period of residence in a coastal basin to identify prevalent dispersal strategies and their relationships with body mass, growth rates and survival. Our results revealed seasonally and spatially variable movement patterns. Juvenile coho salmon that dispersed to tidally affected reaches soon after emergence remained more mobile and expressed lower site fidelity than those individuals that remained in upper riverine reaches. We did not detect significantly different growth rates between sedentary and mobile individuals. Although a greater proportion of sedentary than mobile fish survived winter to emigrate from the creek in the spring, reach of residence at the onset of winter influenced these survival estimates. Hence, apparent summer‐to‐smolt survival for mobile individuals was greater than for sedentary fish in tidally influenced reaches, whereas in riverine reaches the sedentary strategy seemed to be favoured. Our research identified complex movement patterns that reflect phenotypic and life history variation, and underscores the importance of maintaining diverse freshwater and estuarine habitats that support juvenile coho salmon before marine migration.     

Landscape features determine brown trout population structure and recruitment dynamics

Variation in brown trout (Salmo trutta L.) population recruitment and structure is related to migratory patterns, which should depend on ease of access to habitats providing increased opportunity for growth. We quantified the number of young of year (YOY) as a proportion of the total number of brown trout at 24 locations on 11 streams within the Taieri catchment, New Zealand, including back calculated growth rates and emergence dates from otoliths. Locations with high absolute and relative abundance of YOY fish were related to elevation and distance from the river mainstem (habitat used by migratory fish), fish density, and the interaction between invertebrate food biomass, distance and elevation. Hatch date and growth were not related to the proportion of YOY fish, though growth was negatively correlated to total fish density. We suggest landscape features play a large role in determining recruitment and population structure. Locations at lower elevations have a high YOY density, high competition and lower growth, likely prompting out‐migration. These conditions could be created by successful return migration and spawning of large fecund fish resulting in YOY densities exceeding the habitat carrying capacity. Environmental factors, such as food availability, also played a role in determining population structure. These results provide an example of how population structure and recruitment might be controlled by local conditions and access to high growth environments in wild populations of introduced brown trout across a catchment.     

Early ocean distribution of juvenile Chinook salmon in an upwelling ecosystem

Extreme variability in abundance of California salmon populations is often ascribed to ocean conditions, yet relatively little is known about their marine life history. To investigate which ocean conditions influence their distribution and abundance, we surveyed juvenile Chinook salmon (Oncorhynchus tshawytscha) within the California Current (central California [37°30′N) to Newport, Oregon (44°00′N]) for a 2‐week period over three summers (2010–2012). At each station, we measured chlorophyll‐a as an indicator of primary productivity, acoustic‐based metrics of zooplankton density as an indicator of potential prey availability and physical characteristics such as bottom depth, temperature and salinity. We also measured fork lengths and collected genetic samples from each salmon that was caught. Genetic stock identification revealed that the majority of juvenile salmon were from the Central Valley and the Klamath Basin (91–98%). We constructed generalized logistic‐linear negative binomial hurdle models and chose the best model(s) using Akaike's Information Criterion (AIC) to determine which covariates influenced the salmon presence and, at locations where salmon were present, determined the variables that influenced their abundance. The probability of salmon presence was highest in shallower waters with a high chlorophyll‐a concentration and close to an individual's natal river. Catch abundance was primarily influenced by year, mean fork length and proximity to natal rivers. At the scale of sampling stations, presence and abundance were not related to acoustic indices of zooplankton density. In the weeks to months after ocean entry, California's juvenile Chinook salmon population appears to be primarily constrained to coastal waters near natal river outlets.     

Otolith geochemistry in young‐of‐the‐year peacock bass Cichla temensis for investigating natal dispersal in the Rio Negro (Amazon – Brazil) river system

This study examined otolith geochemistry as a natural marker of natal origins in young‐of‐the‐year (YOY) Cichla temensis in the Negro River Basin of Brazil. We analysed trace element and isotopic composition of otoliths of YOY collected off spawning nests from the main stem and major tributaries. These were compared with regional bedrock geologic composition to explore underlying mechanisms of differences in otolith geochemistry. Our results suggest that spatial differences in otolith geochemistry can be used to distinguish natal origins based on ⁸⁷Sr/⁸⁶Sr, Sr/Ca and Ba/Ca ratios. This approach allowed us to correctly classify 99% of juvenile fish to their natal streams using cross‐validation in a linear discriminant function analysis (LDFA). Patterns of otolith isotopic composition correspond with patterns in regional geology as expected based on previously demonstrated correlations, although some fine‐scale spatial differences cannot be accounted for by available geologic information. These results demonstrate that otolith chemistry is valuable as a natural marker of natal origins in this system and suggest that inferences from geologic maps may be useful for interpreting movements based on otolith geochemical signatures. This information provides the basis for future work to investigate the early life history and spatial ecology of this important cichlid.     

Riparian defoliation by the invasive green alder sawfly influences terrestrial prey subsidies to salmon streams

Invasive species in riparian forests are unique as their effects can transcend ecosystem boundaries via stream‐riparian linkages. The green alder sawfly (Monsoma pulveratum) is an invasive wasp whose larvae are defoliating riparian thin‐leaf alder (Alnus tenuifolia) stands across southcentral Alaska. To test the hypothesis that riparian defoliation by this invasive sawfly negatively affects the flow of terrestrial prey resources to stream fishes, we sampled terrestrial invertebrates on riparian alder foliage, their subsidies to streams and their consumption by juvenile coho salmon (Oncorhynchus kisutch). Invasive sawflies altered the composition of terrestrial invertebrates on riparian alder foliage and as terrestrial prey subsidies to streams. Community analyses supported these findings revealing that invasive sawflies shifted the community structure of terrestrial invertebrates between seasons and levels of energy flow (riparian foliage, streams and fish). Invasive sawfly biomass peaked mid‐summer, altering the timing and magnitude of terrestrial prey subsidies to streams. Contrary to our hypothesis, invasive sawflies had no effect on the biomass of native taxa on riparian alder foliage, as terrestrial prey subsidies, or in juvenile coho salmon diets. Juvenile coho salmon consumed invasive sawflies when most abundant, but relied more on other prey types selecting against sawflies relative to their availability. Although we did not find effects of invasive sawflies extending to juvenile coho salmon in this study, these results could change as the distribution of invasive sawflies expands or as defoliation intensifies. Nevertheless, riparian defoliation by these invasive sawflies is likely having other ecological effects that merits further investigation.     

Evidence of cormorant‐induced mortality,disparate migration strategies and repeatable circadian rhythm in the endangered North Sea houting (Coregonus oxyrinchus): A telemetry study mapping the postspawning migration

Life history theory predicts a trade‐off between migration and residency where migration is favoured when it infers elevated fitness. Although migration to more favourable environments may offer higher growth rates, migrants often experience increased mortality due to predation. Here, we investigated mortality and migration behaviour of the North Sea houting (Coregonus oxyrinchus), an anadromous salmonid endemic to the Wadden Sea. We used acoustic telemetry to map the migration of the only remaining indigenous population by applying stationary hydrophones combined with manual tracking. Data suggested a total mortality of 26%, with 30% of the total mortality attributed to predation by great cormorants (Phalacrocorax carbo sinensis), highlighting that North Sea houting conservation could be jeopardised by increased cormorant predation. Risk of cormorant predation was size‐dependent, with smaller fish suffering higher risk of predation. The study found North Sea houting to exhibit disparate migration strategies and identified a lentic area in the estuary as an important habitat. Two newly established artificial lakes within the river system significantly reduced the migration speeds, possibly indicating constrained navigation through the lakes. The migration into the Wadden Sea correlated with temperature perhaps indicating osmoregulatory constraints of sea entry. Unlike many salmonid species, migration occurred both day and night. Moreover, fish exhibited repeatable individual differences in diel activity patterns, suggesting that individuals differ consistently in their migratory activity throughout the 24‐hr period. Our study provides novel information on salmonid migration, which is crucial for the development of science‐based conservation strategies.     

Comparing abundance‐based and tag‐based estimates of coho salmon marine survival

Obtaining reliable estimates of marine survival is essential for understanding anadromous salmon population dynamics. Two common approaches to estimating marine survival are (a) dividing abundance of returning adult salmon abundance by abundance of smolts from the same cohort, or (b) tagging a portion of the migrating smolts and estimating the return rate of tagged adults. This study compared these two approaches to estimating marine survival for coho salmon, Oncorhynchus kisutch (Walbaum), across multiple years in three California streams. Abundance‐based survival estimates were higher than tag‐based estimates; average estimates for the two techniques differed from 1.5‐fold to 7.4‐fold across streams. One likely cause for these divergent estimates is migration of juveniles from natal habitat before smolt trapping begins, resulting in an underestimate of smolt abundance and an overestimate of marine survival rate for the abundance‐based method. Estimates of marine survival obtained from abundance estimates and tag returns are not directly comparable.