Spatial distribution patterns of fish egg and larval assemblages in the lower reach of the Yangtze River: Potential implications for conservation and management

1. River fish diversity is threatened by anthropogenic environmental alteration to landscapes. The early life-history stages of fish play an important role in maintaining diversity and population recruitment and can be heavily influenced by landscape patterns. Information on temporal and spatial distribution patterns of fish eggs and larvae is also important for biodiversity conservation and management of fish resources.
2. The Yangtze River possesses a high diversity of fishes, including many commercially important species. The economy along the lower reach of the river is well developed, and most of the area is experiencing high pressure from human impacts. This section of the Yangtze River connects with the largest freshwater lake in China at the upstream end and flows into the estuary at the downstream end. These two landscape features are likely to have a significant impact upon the spatial distributions of fish egg and larval assemblages.
3. Environmental variables, fish eggs, and larval assemblages were sampled in three locations, at Hukou, Anqing, and Jingjiang, in the lower reach of the Yangtze River. The results suggest that the higher number of species and greater abundance in upstream sites reflect the critical function of connectivity of Poyang Lake with the river for fish recruitment in the lower Yangtze. The delayed bloom of larval fish, occurrence of estuarine species, and a lower species number and abundance of freshwater fish downstream reflect the influence of tidal intrusion from the estuary.
4. This study highlights the value of maintaining natural river–lakes connectivity in the Yangtze River as a conservation measure. The connected river–lake system should be designated as a priority area for fish resource protection in the lower reach of the Yangtze River. We recommend further measures to break down barriers between the river and other lakes and to restore the natural lateral connectivity of the floodplain ecosystem.

     

Río de la Plata voyagers: Deciphering the migration ecology of a vulnerable marine catfish (Genidens barbus) in a large subtropical river (lower Uruguay River)

1. Genidens barbus is a vulnerable marine migrant catfish with low fecundity, a complex life cycle (i.e. mouth breeding), and is the target of industrial and artisanal fisheries of several countries. This species regularly migrates from marine to freshwater environments of the south-western Atlantic.
2. The aim of this work was to delve deeper into the migration ecology of G. barbus, characterizing both its timing and potential environmental drivers. Furthermore, aspects of the population structure and reproduction of migrants in the lower Uruguay River were studied and the presence of juveniles in the adjacent estuarine recruitment area was evaluated.
3. Data from 11 years (2008–2018) of records of adult G. barbus captured by artisanal fisheries were used alongside relevant environmental variables that were recorded monthly. Reproductive biology (i.e. sex ratio, gonadosomatic index, fecundity, and oocyte size) was analysed for a period of 3 years (2016–2018). The juvenile abundance in the Río de la Plata estuary was evaluated seasonally.
4. A total of 935 adult individuals of G. barbus were captured, representing a total biomass of 3,123 kg. The migration timing was from early spring to early summer. The abundance of migrants strongly increased with river discharge, suggesting that this variable regulates the upriver migration. Furthermore, pre- and post-spawn females and males displaying mouth breeding were recorded during the study period, confirming G. barbus reproduction in the lower Uruguay River.
5. The results obtained suggest that G. barbus ascend to spawn in the freshwater environments upstream from the mouth of the Uruguay River. Then, adult males incubate and carry the embryos downstream, releasing juveniles in the Río de la Plata estuary.
6. This relevant information will help with the implementation of effective management polices (e.g. fishing restrictions during the reproductive period) for the presently unregulated fishery of this vulnerable species in the lower Uruguay River.

     

Assessing the relative impacts of land‐use change and river regulation on Burdekin River (Australia) floodplain wetlands

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Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion,northern Australia

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The nutrient status of the agriculturally impacted Gamtoos Estuary,South Africa,with special reference to the river‐estuarine interface region (REI)

• 1. Ecological water reserves are part of the new water management philosophy in South Africa. The estuaries are threatened by excessive water abstraction from their rivers and the consequent reduction in freshwater input. This study was conducted to further improve our understanding of freshwater requirements in terms of nutrients for South African estuaries.
• 2. The Gamtoos Estuary was sampled between November 1996 and November 1998 to determine its nutrient status and freshwater input rates. Furthermore, the possible existence of a distinct river‐estuarine interface (REI) in terms of nutrients has been investigated. Nutrients analysed included phosphate, nitrate, nitrite, ammonia, dissolved organic nitrogen (DON), dissolved organic carbon (DOC), particulate organic nitrogen (PON) as Kjieldahl nitrogen, total particulate phosphorus and total particulate carbon.
• 3. The Gamtoos River was found not to be the ultimate source of nutrients to the estuary, but non‐point sources such as the seepage of fertilisers from adjacent agricultural fields determined to a great extent the nutrient status of the estuary.
• 4. Results showed that it was not possible to identify a defined river‐estuarine interface region for all nutrients. Most were measured in higher concentrations in the lower salinity reaches (<17‰) where we observed the combined effect of inputs from the Gamtoos River, an agricultural drainage pipe, and fertilizer seepage from non‐point sources on nutrient concentration.
• 5. Prolonged water withdrawal for human use impacts the continuous renewal of the nutrient pool so important to other South African estuaries with relative pristine catchment areas. However, reduced fresh water inputs could enhance eutrophication in polluted estuaries due to a decreased flushing potential of the estuary. In this case the Gamtoos Estuary has a freshwater requirement for freshets and floods to “clean” the estuary of accumulated nutrients and other organic material.
• 6. This should be a consideration in further freshwater abstraction policies. Conservation issues arise since the Gamtoos Estuary is one of the few permanently open estuaries along the South African coast and serve in this study as an example and as a first attempt to relate freshwater requirements to nutrient dynamics in a South African context.

Copyright © 2002 John Wiley & Sons, Ltd.     

To sea or not to sea? Multiple lines of evidence reveal the contribution of non‐diadromous recruitment for supporting endemic fish populations within New Zealand's longest river

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Effects of flow variation on channel and floodplain biota and habitats of the Sacramento River,California, USA

• 1. Despite progress in the development of conceptual models of river processes, the validation and application of these models to conservation may be limited by a deficit of tools for intermediate‐scale (1–100km) reaches. A model was developed to examine the effect of variation in flow on the responses of two trophic levels in a large temperate river (Sacramento River) and its seasonal floodplain (Yolo Bypass). Field data and hydrologic simulations were evaluated for three hydrologically diverse years.
• 2. The simulations showed much more hydrologic variability in the floodplain than the river, with greater total surface and shallow area, longer hydraulic residence times, and lower water velocities for the floodplain.
• 3. Chlorophyll a levels were significantly higher in the floodplain than in the river, and were negatively associated with flow. These results were consistent with longer hydraulic residence times, increased surface area of shallow water, and warmer water temperatures.
• 4. Copepods and cladoceran densities were similar in the river and its floodplain, and were mostly negatively associated with flow.
• 5. There were significantly higher densities of Diptera and terrestrial invertebrates in the floodplain than the river. Diptera densities in the floodplain were positively associated with flow.
• 6. These results provide evidence of the incremental value of floodplain habitat to the conservation of large rivers. In particular, it appears that providing river–floodplain connectivity can enhance production of lower trophic levels at relatively rapid time scales, probably benefitting secondary consumers, including Chinook salmon (Onchyrhynchus tshawytscha).

Copyright © 2004 John Wiley & Sons, Ltd.     

Subtidal macrozoobenthic assemblages along the River Minho estuarine gradient (north‐west Iberian Peninsula)

• 1. The community composition and spatial distribution of the macrobenthic fauna in relation to abiotic factors was investigated at 20 sites along the River Minho estuarine gradient, in the north‐west Iberian Peninsula.
• 2. A total of 68 taxa were identified and the non‐indigenous invasive species Corbicula fluminea dominated both numerically (43.1%) and by biomass (97.7%).
• 3. Multivariate analysis identified spatial differences in structure and composition of assemblages and suggests a continuum between five distinct assemblages along the length of the estuary. This situation fits the two‐ecocline model in which an ecocline from the sea to mid‐estuary overlaps with an ecocline from freshwater to mid‐estuary.
• 4. Each assemblage was found in a particular physico‐chemical environment and had a specific composition. The distribution and diversity patterns were linked to salinity. However, inside each assemblage the sediment characteristics (granulometry and organic matter content) played an important role.
• 5. The highest abundances, biomasses and total species numbers were recorded from upstream freshwater tidal areas, indicating the importance of these habitats within estuarine ecosystems.

Copyright © 2007 John Wiley & Sons, Ltd.     

Seasonal use of a macrotidal estuary by the endangered dwarf sawfish,Pristis clavata

1. Sawfishes (Family: Pristidae) are one of the most imperilled fish families worldwide. There is an increasingly urgent need to better understand the biology, ecology, and population status of the five sawfish species to develop more effective conservation measures. The dwarf sawfish, Pristis clavata, is one of the least researched members of the pristids, with literature limited to analysing disparate datasets or collations of rare encounters in northern Australia.
2. This study examined the spatial ecology of dwarf sawfish using targeted surveys and acoustic telemetry to determine its habitat use in a macrotidal estuary in northern Australia. Seventeen dwarf sawfish were tagged with acoustic transmitters and monitored in the Fitzroy River estuary and adjacent King Sound (Kimberley, Western Australia) between August 2015 and November 2017.
3. Dwarf sawfish observed within the Fitzroy River estuary and King Sound were juveniles, ranging between 740 and 2,540 mm in total length. Catch per unit effort of dwarf sawfish in the late dry season was relatively high in the estuary, with the catch rate in 2015 being one of the highest reported for any sawfish species.
4. Acoustic detections revealed a distinct seasonal pattern in the use of different parts of the estuary and King Sound, which was found to be driven by salinity. Dwarf sawfish predominately occupied a single large pool near the terminus of the tidal limit in the late dry season (August–November), before transitioning to regions in closer proximity to the river mouth or in King Sound in the wet and early dry seasons (December–July).
5. Given the high abundance and residency of dwarf sawfish in the Fitzroy River estuary, this area is an important nursery for the species during the late dry season and should be formally recognized as a habitat protection area for the species.

     

Integrating freshwater wetland science into planning for Great Barrier Reef sustainability

1. The paper ‘Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion, northern Australia’, published in Aquatic Conservation: Marine and Freshwater Ecosystems in 2015, has contributed in several ways to the integration of freshwater wetland science within new catchment management policies and practices for Great Barrier Reef (GBR) sustainability.
2. The Tully–Murray biodiversity study developed novel protocols to sample larval, juvenile, and adult fish life‐history stages in floodplain lagoons using a combination of boat‐based backpack electrofishing and fyke netting. In addition, hydrological and hydrodynamic models were applied in a completely new way to quantify the timing, extent, and duration of water connectivity across floodplain streams, cane drains, and wetlands. Combining the two novel approaches enabled an analysis of lagoon fish assemblage patterns in relation to environmental gradients, especially floodplain hydrology, connectivity patterns, and measures related to agricultural land use.
3. In demonstrating the importance of different levels of connectivity for different biodiversity outcomes in freshwater floodplain lagoons of the Tully–Murray catchment, the subject paper established that floodplain connectivity needs to be taken into consideration in wetland management practices.
4. The timing of the subject publication was fortuitous. It coincided with the preparation of the evidence‐based 2017 Scientific Consensus Statement on land‐based water quality impacts on the GBR. As one of the few freshwater wetland ecology publications for the catchments of the GBR at that time, this paper played an important role in demonstrating freshwater wetland values, fish conservation options, and management imperatives to sustain wetland ecological health and services in GBR catchments.
5. By advancing the understanding of factors driving biodiversity patterns, and the importance of connectivity and ecohydrological processes in freshwater floodplain wetlands of the GBR catchment, the Tully–Murray study helped to drive new policy directives for the protection and restoration of catchment, floodplain, and estuary functions, and connectivity, now embedded in the Reef 2050 Long‐Term Sustainability Plan 2018, an overarching strategy for managing the GBR over the next 35 years, and complementary Queensland environmental legislation.

     

The impact of catastrophic channel change on freshwater mussels in the Hunter River system,Australia: a conservation assessment

• 1. Australia has a distinct suite of endemic freshwater mussel species, several of which are restricted to south‐eastern Australia, an intensively modified region supporting much of the nation's population and where pressures on freshwater ecosystems are increasing.
• 2. Surveys were made of 78 sites in the Hunter River system to determine the distribution and abundance of the six mussel species occurring in the region, to identify threatening processes and to locate populations of high conservation value.
• 3. Mussel populations were mainly distributed in the hydrologically stable southern Barrington rivers, where those in the Williams River have the highest conservation value. Strongholds for Hyridella drapeta were found in Wollombi Brook.
• 4. Mussels were not detected at 40% of the sites, some of which supported mussels in the past. These were mainly reaches that have undergone river metamorphosis.
• 5. Where found, most mussel populations had low densities and were highly fragmented. Major threats to these remnant populations are degradation of riparian and instream condition from agricultural activities, extreme climatic events (flood and drought) and the introduced macrophyte, Salvinia molesta.
• 6. While threat mitigation can be achieved by habitat protection and strategies to reconnect mussel populations, managers are largely unaware of this invertebrate group. Formal recognition of regionally threatened mussel populations would do much to focus efforts on conservation.
• 7. The proposed construction of a large dam on the Williams River is a potential threat to the most important mussel populations in the Hunter River system. Copyright © 2009 John Wiley & Sons, Ltd.

     

Distribution and establishment of the alien Australian redclaw crayfish,Cherax quadricarinatus,in the Zambezi Basin

1. Crayfish are invasive polytrophic keystone species, which are phylogenetically unique on the African continent. The Australian redclaw crayfish Cherax quadricarinatus is invasive in southern African freshwater systems including the Zambezi River Basin. Surveys conducted across the Zambezi Basin (Botswana, Zimbabwe, Namibia and Zambia) between 2017 and 2019 showed that C. quadricarinatus is broadly distributed across the Upper and Middle Zambezi and is rapidly spreading through natural and human-mediated means across several ecoregions.
2. The probability of capture (P_capture), catch per unit effort (CPUE) and population characteristics of C. quadricarinatus from the recent Barotse floodplain invasion were compared with older invasions from Lake Kariba and Kafue River.
3. The P_capture and CPUE of C. quadricarinatus in the recently invaded region of the Barotse floodplain were similar to those of the older invasions. Mass and carapace length of C. quadricarinatus from the Barotse floodplain were significantly lower than those of C. quadricarinatus from the older invasions. Sex ratios differed significantly between the three invasive populations. The Barotse floodplain population had a disproportionate investment in females (65.3%) and intersex individuals (8.4%). No crayfish were detected in the Zambezian Headwaters or the Okavango Floodplains ecoregions, but current spread rates are 49 km yr⁻¹ downstream and 12 km yr⁻¹ upstream.
4. Investment in population management and the prevention of spread will have high conservation value across the invaded regions in order to restrict crayfish ecological impacts via direct predation and competition. In areas where crayfish are in high abundance, existing fisheries are affected through damage to nets, leading to increased net abandonment and ghost gear pollution in invaded regions.
5. The emphasis should be on developing cohesive transboundary biosecurity policies in southern Africa to limit further spread that will threaten the integrity of freshwater ecosystems. However, long-term monitoring is needed to gauge invasion risk to sensitive areas such as the Okavango Floodplains ecoregion and determine field-based ecological impacts.

     

Impacts of artificial structures on the freshwater pearl mussel Margaritifera margaritifera in the River Dee,Scotland

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Effects of trap fishing on reef fish communities

• 1. Trap fishing is widespread on coral reefs but the sustainability of this practice is causing concern because it is efficient and unselective. The effects of trap fishing were investigated by comparing fish assemblages among six Caribbean islands subject to different trapping pressures. These ranged from none in Bonaire and Saba increasing through Puerto Rico, St Lucia, Dominica and Jamaica respectively.
• 2. Fish were censused at depths of 5 m and 15 m on fore‐reef slopes by counting the numbers within replicate 10 m diameter areas for 15 min. Between 64 and 1375 counts were made in each country.
• 3. In St Lucia and Jamaica abundance of fish censused on the reef was compared to representation in traps which were visually sampled underwater in the area of fish counts. Twenty‐three traps were sampled in Jamaica and 75 in St Lucia. For some comparisons between these islands, St Lucian sampling effort was reduced to that of Jamaica (23 traps and 112 counts) by randomly sub‐sampling 10 times.
• 4. Traps contained 54 different species in St Lucia and 22 in Jamaica, while there were 90 and 57 respectively in counts. After reducing St Lucian sampling effort to Jamaican levels, an average of 35 species were found in traps and 70 seen in counts. Of these, 76% in St Lucia and 73% in Jamaica were relatively more abundant in traps than they were on the reef.
• 5. Species were considered to be highly susceptible to trapping if the ratio of their abundance in traps compared to that on the reef exceeded 3:1. Trapping pressure was approximately three and a half times greater in Jamaica than St Lucia. After equalizing sampling effort, there was an average of 16 highly trappable species in St Lucia compared to 13 in Jamaica. Species did not always appear highly trappable in both countries. Eleven of St Lucia's highly trappable species were absent from Jamaica (falling to 8.5 on average after equalizing sampling effort), but none vice versa, suggesting that trapping may have contributed to their absence or rarity on Jamaican reefs.
• 6. The Tetraodontiformes, which include many non‐target species, were particularly susceptible to trapping in both countries. Their abundance in the six islands censused was inversely related to trap fishing pressure, as was that of two other non‐target families, butterflyfish (Chaetodontidae) and angelfish (Pomacanthidae).
• 7. To determine whether fish that are common in traps in St Lucia are reaching sexual maturity before capture, size frequency data for 23 species from a sample of trap catches were gathered and examined for their state of maturity. In seven species, more than a third of 705 trapped fish were immature, indicating that trap fishing causes growth over‐fishing (premature removal of fish), and calling into question the sustainability of yields for these species.
• 8. In conclusion, at the intensities seen in this study, trap fisheries cause serious over‐fishing, reduce biodiversity, and alter ecosystem structure. While commonly perceived as low impact, coral reef trap fisheries in the Caribbean and further afield, need tighter regulation and control.

Copyright © 2006 John Wiley & Sons, Ltd.     

Fishing for conservation of freshwater tropical fishes in the Anthropocene

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Connectivity,habitat, and flow regime influence fish assemblage structure: Implications for environmental water management in a perennial river of the wet–dry tropics of northern Australia

1. Environmental water management seeks to balance competing demands between the water needed to sustain human populations and their economic activities and that required to sustain functioning freshwater ecosystems and the species they support. It must be predicated on an understanding of the environmental, hydrological, and biological factors that determine the distribution and abundance of aquatic species.
2. The Daly River of the wet–dry tropics of northern Australia consists of a perennially flowing main stem and large tributaries, as well as many small to large naturally intermittent tributaries, and associated off‐channel wetlands. Increased groundwater abstraction to support irrigated agriculture during the dry season threatens to reduce dry‐season flows that maintain perenniality and persistence of freshwater fishes.
3. Fish assemblages were surveyed at 55 locations during the dry season over a 2‐year period with the goal of establishing the key landscape‐scale and local‐scale (i.e. habitat) drivers of fish species distribution.
4. Longitudinal (upstream/downstream) and lateral (river/floodplain) gradients in assemblage structure were observed with the latter dependent on the position in the river landscape. Underlying these gradients, stream flow intermittency influenced assemblage composition, species richness, and body size distributions. Natural constraints to dispersal were identified and their influence on assemblage structure was also dependent on position within the catchment.
5. Eight distinct assemblage types were identified, defined by differences in the abundance of species within five groups differing in functional traits describing body size, spawning requirements, and dispersal capacity. These functional groups largely comprised species widely distributed in northern Australia.
6. The results of the study are discussed with reference to the environmental flow needs of the Daly River and other rivers of northern Australia. The findings may also be applied to environmental flow management in savannah rivers elsewhere.

     

Freshwater mollusc assemblages and habitat associations in the Danube River drainage,Hungary

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Fishers,dams, and the potential survival of the world's rarest turtle,Rafetus swinhoei,in two river basins in northern Vietnam

1. Next to cetaceans and megafishes, freshwater turtles are the most iconic endangered freshwater species.
2. A detailed questionnaire survey conducted with more than 100 individuals from fishing communities in northern Vietnam was used to investigate the current status of Southeast Asian turtles and provides new hope concerning the survival of Rafetus swinhoei, for which recent official records in the wild are limited to a single individual in Vietnam.
3. The survey included the entire Vietnamese portion of the Da River in Hoa Binh and Son La provinces, as well as the Chu and Ma river system in Thanh Hoa Province, as they are the last sites where the world's rarest and largest Asian softshell turtle has been seen. The questionnaire, conducted in Vietnamese, focused on demographic details, fishing intensity and gear, the status of fishing grounds, and the frequency of interaction with turtles.
4. The great majority of fishers could recognize different turtle species from photographs and describe their preferential breeding habitats; not all knew that they are protected. A few confirmed that more than once each year they still encounter freshwater turtles during their fishing activities.
5. This survey provides detailed information on sites where freshwater turtles are still seen in northern Vietnam and broadens our hope that wild individuals of the extremely rare R. swinhoei may still be present in the remaining riparian wetlands of these biodiverse, dammed, and controlled river basins in North Vietnam.

     

Using otolith microchemistry to reconstruct habitat use of American eels Anguilla rostrata in the St. Lawrence River–Lake Ontario system

Catadromy among freshwater eels is increasingly recognised as being facultative, with some individuals carrying out growth exclusively in brackish or coastal marine waters, or switching between brackish or marine waters and freshwater habitats. In an attempt to reconstruct habitat use of yellow‐stage American eels in a large river‐lake ecosystem, trace element line scans were obtained, using LA‐ICP‐MS, from the otoliths of 110 eels sampled at various locations throughout the St. Lawrence River–Lake Ontario (SLRLO) system. Elemental profiles for strontium (Sr), barium (Ba), manganese (Mn) and magnesium (Mg) enabled us to distinguish three chemical signatures that appear to represent three distinct habitats within the SLRLO. Of these, one was shown to likely correspond to the brackish estuary (high strontium values). The other two signatures, characterised by low strontium but variable concentrations of barium and manganese, may correspond to habitats within the main‐stem St. Lawrence River and one or more of its tributaries. Most (78%) of the switches among habitats occurred within the first four years after recruitment suggesting an increasing likelihood for eels to maintain residence in one habitat as they grow older. This suggests that tributaries may provide important habitats for American eels during the first several years after recruiting to the SLRLO. In addition, our results suggest that a small proportion American eels in the SLRLO can undertake movements on the order of at least 200 km during the early growth stage. This information has important implications for the management and conservation of this species in the system.     

The shadow of the Balbina dam: A synthesis of over 35 years of downstream impacts on floodplain forests in Central Amazonia

1. The Balbina hydropower dam in the Central Amazon basin, established in the Uatumã River in the 1980s, is emblematic for its socio-environmental disaster. Its environmental impacts go far beyond the reservoir and dam, however, affecting the floodplain forests (igapó) in the downstream area (dam shadow), which have been assessed using a transdisciplinary research approach, synthesized in this review.
2. Floodplain tree species are adapted to a regular and predictable flood pulse, with high- and low-water periods occurring during the year. This was severely affected by the operation of the Balbina dam, which caused the suppression of both the aquatic phase at higher floodplain elevations and the terrestrial phase at lower floodplain elevations (termed the ‘sandwich effect’).
3. During the period of construction and reservoir fill, large-scale mortality already occurred in the floodplains of the dam shadow as a result of reduced stream flow, in synergy with severe drought conditions induced by El Niño events, causing hydraulic failure and making floodplains vulnerable to wildfires.
4. During the operational period of the dam, permanent flooding conditions at low topographical elevations resulted in massive tree mortality. So far, 12% of the igapó forests have died along a downstream river stretch of more than 125 km. As a result of flood suppression at the highest elevations, an encroachment of secondary tree species from upland (terra firme) forests occurred.
5. More than 35 years after the implementation of the Balbina dam, the downstream impacts caused massive losses of macrohabitats, ecosystem services, and diversity of flood-adapted tree species, probably cascading down to the entire food web, which must be considered in conservation management.
6. These findings are discussed critically, emphasizing the urgent need for the Brazilian environmental regulatory agencies to incorporate downstream impacts in the environmental assessments of several dam projects planned for the Amazon region.