The influence of land cover composition and groundwater on thermal habitat availability for brook charr (Salvelinus fontinalis) populations in the United States of America

Abstract – Brook charr (Salvelinus fontinalis) is a sentinel fish species that requires clean, cold water habitats generally resulting from landscapes that allow for surface water flows devoid of sediment and contaminants and high groundwater discharge of cold water. As such, brook charr are impacted by land cover changes that alter stream temperature regimes. We evaluated brook charr populations across their eastern and midwestern range in the United States with reference to thermal habitat availability in relationship to land cover and per cent baseflow. We found that while forest cover does protect brook charr thermal habitat, high levels of groundwater discharge can allow for increased levels of agriculture within a watershed by keeping the water cold in spite of warm ambient summer temperatures. Our study concludes that with enhanced communication among land, water and fisheries managers, society can provide for sustainable stream salmonid populations despite increased threats on cold water resources.     

Projected impacts of climate change on stream salmonids with implications for resilience‐based management

The sustainability of freshwater fisheries is increasingly affected by climate warming, habitat alteration, invasive species and other drivers of global change. The State of Michigan, USA, contains ecologically, socioeconomically valuable coldwater stream salmonid fisheries that are highly susceptible to these ecological alterations. Thus, there is a need for future management approaches that promote resilient stream ecosystems that absorb change amidst disturbances. Fisheries professionals in Michigan are responding to this need by designing a comprehensive management plan for stream brook charr (Salvelinus fontinalis), brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) populations. To assist in developing such a plan, we used stream‐specific regression models to forecast thermal habitat suitability in streams throughout Michigan from 2006 to 2056 under different predicted climate change scenarios. As baseflow index (i.e., relative groundwater input) increased, stream thermal sensitivity (i.e., relative susceptibility to temperature change) decreased. Thus, the magnitude of temperature warming and frequency of thermal habitat degradation were lowest in streams with the highest baseflow indices. Thermal habitats were most suitable in rainbow trout streams as this species has a wider temperature range for growth (12.0–22.5 °C) compared to brook charr (11.0–20.5 °C) and brown trout (12.0–20.0 °C). Our study promotes resilience‐based salmonid management by providing a methodology for stream temperature and thermal habitat suitability prediction. Fisheries professionals can use this approach to protect coldwater habitats and drivers of stream cooling and ultimately conserve resilient salmonid populations amidst global change.     

Are native brook charr and introduced rainbow trout differentially adapted to upstream and downstream reaches?

Abstract— Due to species introductions, brook charr (Salvelinus fontinalis) and rainbow trout (Oncorhynchus mykiss) occur together in many North American streams and typically exhibit a pattern of distribution in which brook charr numerically dominate headwaters and rainbow trout dominate downstream reaches. It has been suggested that 1) the two species compete or 2) the two species do not compete because they are differentially adapted to environmental conditions found in upstream and downstream zones. We assessed whether there were differences in growth and macrohabitat (pool, run and riffle) selection of brook charr and rainbow trout in upper, middle and lower stream zones of a small Pennsylvania stream. Brook charr and rainbow trout placed in replicate paired enclosures set in upstream and downstream reaches showed no significant differences in growth and survival rates upstream, but brook charr had significantly greater growth rates than rainbow trout downstream. Enclosed fish and free-ranging fish both had negative growth rates during the summer. Enclosed fish lost significantly less weight than free-ranging fish. Instantaneous growth rates of free-ranging adult brook charr and rainbow trout from May to August were negative for both species in all stream zones. Underwater observations of adult brook charr and rainbow trout showed both species occurred significantly more often in pool macrohabitats than expected on the basis of macrohabitat availability, except for rainbow trout in the upstream zone. The proportion of pool macrohabitat was not significantly different among stream zones. Brook charr do not appear to be better adapted to upstream environments in Powdermill Run based on growth, survival and macrohabitat selection during summer. Negative biotic interactions acting along with differential environmental adaptations may explain the pattern of distribution of brook charr and rainbow trout in streams, but long-term transplant experiments with additional life stages will be necessary to examine this hypothesis.     

Annual biomass and production of brook charr (Salvelinus fontinalis) introduced into a historically fishless lake

Brook charr 15 months old were introduced in 1985 into one of two self-contained basins of Batchawana Lake, Ontario, Canada, where they survived and reproduced. Population survival rates (ages ≥ 1) remained high (>50%) from 1986 to 1992. Annual growth rates peaked (G^x=3.1) the year following their introduction, and remained between 0.8 and 1.6 thereafter. Brook charr biomass (B) was highest, ～ 55 kg ～ ha^?1 in 1987 and 1990, and production (P) gradually declined from 80–90 in 1986–1987 to ～ 30 kg-ha^?1 -year^?1 in 1990–1991. Initial high P:B ratios for brook charr, ～ 3.0, declined and stabilized to ～ 1.3 in the third year after introduction.     

Effects of reduced summer flows on the brook trout population and temperatures of a groundwater‐influenced stream

Withdrawal of water from streams and groundwater is increasing in Midwestern North America and is a potential threat to coldwater fishes. We examined the effects of summer water withdrawals on brook trout Salvelinus fontinalis populations and water warming rates by diverting 50–90% of summer baseflow from a 602‐m treatment zone (TZ) in a groundwater‐influenced Michigan stream during 1991–1998. We compared density of brook trout in fall, and spring‐to‐fall growth and survival of brook trout, between the TZ and an adjacent reference zone (RZ) whose flows were not altered. Flow reductions had no significant effects on the density of brook trout in fall or spring‐to‐fall survival of brook trout. However, spring‐to‐fall growth of brook trout in the TZ declined significantly when 75% flow reductions occurred. Cold upstream temperatures and the relatively short study reach kept thermal habitat conditions excellent for brook trout in the TZ throughout the dewatering experiments. These findings suggest that brook trout can tolerate some seasonal loss of physical habitat if temperature conditions remain suitable. In summer 1999, we experimentally assessed the influence of flow reduction on the warming rate through the TZ by diverting from 0% to 90% of flow around the TZ in 3‐ or 4‐day trials on a randomised schedule. Average daily temperature increased exponentially as stream flows declined from normal summer levels. Our findings suggest the risk of trout habitat loss from dewatering is potentially large and proportional to the magnitude of withdrawal, especially as thermal conditions approach critical levels for trout.     

Association of brook trout and Oncorhynchus spp. with large wood jams in a Lake Superior tributary in a northern old‐growth watershed

Wood in streams functions as fish habitat, but relationships between fish abundance (or size) and large wood in streams are not consistent. One possible reason for variable relationships between fish and wood in streams is that the association of fish with wood habitat may depend on ecological context such as large‐scale geomorphology. We studied the relationship between salmonid assemblages and large wood jams (LWJ) in four settings that differed geomorphically at the scale of the stream corridor along a tributary to Lake Superior in old‐growth conifer–hardwood forest in northern Michigan. The focal fish species of this study were brook trout (Salvelinus fontinalis), which were wild in the stream. Relocation efforts for coaster brook trout (an adfluvial life history variant of brook trout) were ongoing in the study stream. We measured fish abundance and length in pairs of pools of similar size and substrate, but varying in the presence of LWJ; this allowed us to evaluate associations of fish simply with the presence of LWJ rather than with other channel or flow‐shaping functions of LWJ. The length of Oncorhynchus spp. and young introduced brook trout was not strongly correlated with LWJ presence; however, the presence of LWJ in pools was positively correlated with larger wild brook trout. We also found that the correspondence of LWJ with the abundance of salmonids appears to be moderated by the presence of alternative habitat in this relatively natural, old‐growth forest stream.     

Latitudinal variation in growth and otolith‐inferred field metabolic rates of Canadian young‐of‐the‐year Arctic charr

Countergradient variation (CGV) is defined as genetic variation that counteracts the negative influences of the physical environment, minimising phenotypic variability along an environmental gradient. CGV is thought to have relevance in predicting the response of organisms to climate variability and change. To test the hypothesis that growth rate increased with latitude, consistent with CGV, young‐of‐the‐year (YOY) Arctic charr, Salvelinus alpinus, were examined along a ~27° latitudinal gradient in central and eastern Canada. Growth rates were estimated from fork lengths standardised by the thermal opportunity for growth based on experienced water temperatures derived using otolith oxygen stable isotopes. Results demonstrated patterns consistent with CGV, where northern populations demonstrated faster growth rates. A secondary aim was to test for similar geographical patterns in otolith‐inferred metabolic rates, which reflect the energetic costs of standard metabolic rate (SMR) and other processes such as feeding, locomotion, thermoregulation, reproduction and growth. Results demonstrated a significant, positive relationship between otolith‐inferred metabolic rate and latitude, which may reflect an increase in one, or a combination, of the above‐noted physiological processes. The similar latitudinal pattern in growth and otolith‐inferred metabolic rates suggests greater intake of food per unit of time by northern fish. The phenotypic variation in physiological traits observed here demonstrates the significant adaptability of Arctic charr to different thermal regimes with different growing season lengths. Determining the relative contributions of phenotypic plasticity and genetic variation to the observed latitudinal variation will be critical to predicting the responses of Arctic charr to climate change more accurately.     

Seasonal movement,growth and survival of brook trout in sympatry with brown trout in Midwestern US streams

Seasonal patterns in growth, survival and movement of brook trout Salvelinus fontinalis were monitored in two southeastern Minnesota streams divided into study reaches based on brown trout Salmo trutta abundance. We estimated survival and movement while testing for effects of stream reach and time using a multistrata Cormack–Jolly–Seber model in Program MARK. Multistrata models were analysed for three age groups (age‐0, age‐1 and age‐2+) to estimate apparent survival, capture probability and movement. Survival varied by time period, but not brown trout abundance and was lower during flood events. Age‐0 brook trout emigrated from reaches with low brown trout abundance, whereas adult brook trout emigrated from downstream brown trout‐dominated reaches. Growth was highest in spring and summer and did not differ across streams or reaches for the youngest age classes. For age‐2+ brook trout, however, growth was lower in reaches where brown trout were abundant. Interspecific interactions can be age or size dependent; our results show evidence for adult interactions, but not for age‐0. Our results suggest that brook trout can be limited by both environmental and brown trout interactions that can vary by season and life stage.     

Food composition, habitat use and growth of stocked and native Arctic charr, Salvelinus alpinus, in Lake Muddusjärvi, Finland

Habitat use, growth and food composition of native and stocked Arctic charr, Salvelinus alpinus (L.), were studied in the subarctic Lake Muddusjärvi, northern Finland, to investigate reasons for poor stocking success. Samples were collected with pelagic and epibenthic gill nets. Stocked and native charr occurred in similar epibethic habitats, whereas pelagic habitat was avoided. Native charr grew fast after shifting to piscivory. Growth rate of stocked charr was slow because only a small proportion of stocked fish became piscivorous during the first year after stocking. During the first lake year, stocked charr divided into slow-growing planktivores and fast-growing piscivores. Piscivorous stocked and native charr consumed only whitefish, Coregonus lavaretus (L.), as their prey. Small-sized (<10 cm) whitefish were preferred when shifting to piscivory.     

Changes in native bull trout and non‐native brook trout distributions in the upper Powder River basin after 20 years,relationships to water temperature and implications of climate change

Many bull trout populations have declined from non‐native brook trout introductions, habitat changes (e.g. water temperature) and other factors. We systematically sampled the distribution of bull trout and brook trout in the upper Powder River basin in Oregon in the 1990s and resampled it in 2013–2015, examined temperature differences in the habitats of the two species and analysed trends in temperatures in the light of possible increases associated with climate change. The species’ distributions are currently similar to those in the 1990s, except in one stream where bull trout declined. However, bull trout consisting of resident forms remain restricted to a few kilometres of habitat at the upper end of fish distribution. In streams where both species occur, the typical pattern was an intermediate zone of mixed bull trout, brook trout, and hybrids downstream of allopatric bull trout and allopatric brook trout extending farther downstream. Temperature differences between where bull trout and most brook trout occurred were small (0.5–1.0°C August mean). There were no statistical increases in water temperatures in nearby streams since the 1990s and no warming trends in air temperatures for the past 25–60 years. However, peak summer water temperatures are occurring about 3 weeks earlier than 25 years ago. Future effects of climate change, including possible increases in temperature, changes in timing and other factors (e.g. snowpack, flow and extreme events) remain a concern for the persistence of these populations. However, it is difficult to precisely predict where those changes will occur and what they will be.     

Is the winter period a severe bottleneck of anadromous riverine Arctic charr parr?

Abstract –  Winter growth and survival of wild individually tagged juvenile Arctic charr (1+ age) from a riverine anadromous stock, were studied in a small ice-covered (∼6 months) ground water brook (temperature ∼1 °C) connected to Skibotnelva in subarctic northern Norway. The overall winter survival was estimated to be 68% from late October 2005 to early May 2006. The recaptured charr were not significantly different in initial length or weight compared with the nonrecaptured fish suggesting low size-dependent mortality. The majority (98%) of the recaptured charr showed significant increase in size, with a mean increment of 62% from their initial bodyweight and 12% of the charr parr had more than doubled their weight. The mean specific growth rate was calculated to be slightly lower (0.27) than estimated values from a growth model (∼0.35). In addition, the condition factor increased significantly during the field experiment. These results are the first individual growth data on riverine anadromous Arctic charr parr under natural winter conditions, and indicate that charr can grow relatively fast during periods with low temperature and also that ground water brooks can be good over-wintering habitat for juvenile Arctic charr. These results suggest that the winter period is perhaps a less severe bottleneck than previously recognised for the cold-adapted Arctic charr.     

Brook trout (Salvelinus fontinalis) movement and survival after removal of two dams on the West Branch of the Wolf River,Wisconsin

Dam removals allow fish to access habitats that may provide ecological benefits and risks, but the extent of fish movements through former dam sites has not been thoroughly evaluated for many species. We installed stationary PIT antennas in 2016 and 2017 to evaluate movements and survival of brook trout Salvelinus fontinalis in the West Branch of the Wolf River (WBWR) in central Wisconsin following removal of two dams and channel modifications designed to promote fish movement. These changes provided access to lacustrine habitats that might provide suitable winter habitat or act as ecological sinks. We used multistate models to estimate transition probabilities between river sections, to determine whether brook trout: (a) moved between multiple river sections and (b) entered lacustrine habitats as seasonal refuges, but eventually returned to lotic habitat. We also used a Cormack-Jolly-Seber model to evaluate whether apparent survival of brook trout in the WBWR was comparable to other populations. Few fish moved among river sections or used lacustrine habitat (<5% of tagged fish); most brook trout remained in sections where they were initially tagged, potentially due to quality habitat located throughout the river. Like other studies, brook trout in the WBWR appear to experience high mortality based on low number of detections, few physical recaptures and an estimated eight-month apparent survival rate of 0.27. In scenarios where fish can already access suitable habitat, removal of dams may not result in substantial increases in fish movement and colonisation of newly accessible habitat may not occur immediately.     

Microhabitat use by southern brook trout (Salvelinus fontinalis) in a headwater North Carolina stream

Brook trout are the one of the only Salvelinus species native to eastern North America and range from Canada to Georgia. Very little is known, however, about the ecology of the southern form of this species. We quantified microhabitat use of southern brook trout in Ball Creek NC, a third‐order stream, during six seasonal samples (summer 2010, autumn 2010, spring 2011, summer 2011, autumn 2011 and spring 2012). In general, trout preferentially occupied deeper microhabitats with lower mean velocities and higher amounts of erosional substrata than were randomly available. Older trout (1+ and 2+) occupied deeper microhabitats with lower mean velocities than yearling trout. These microhabitats typically represent ‘plunge pools’. Southern brook trout also occupied focal point velocities that were statistically indistinguishable from optimal velocities calculated for rainbow trout in the same system and thus may chose microhabitats that maximise net energy gain. Southern brook trout are found in isolated populations, and management strategies should focus on the preservation of plunge pool habitat for conservation of this subspecies.     

Ageing and growth of charr, Salvelinus alpinus (L.), from three habitat types in Scotland

Abstract. Growth was studied in Arctic charr, Salvelinus alpinus L., from three differing loch habitats in Scotland. Otoliths were more reliable for age determination than scales. Growth rates were variable both among and within populations. Growth in weight was more variable and appeared to be related to richness of the habitat.     

Movement patterns of Brook Trout in a restored coastal stream system in southern Massachusetts

Coastal Brook Trout (Salvelinus fontinalis) populations are found from northern Canada to New England. The extent of anadromy generally decreases with latitude, but the ecology and movements of more southern populations are poorly understood. We conducted a 33‐month acoustic telemetry study of Brook Trout in Red Brook, MA, and adjacent Buttermilk Bay (marine system) using 16 fixed acoustic receivers and surgically implanting acoustic transmitters in 84 individuals. Tagged Brook Trout used the stream, estuary (50% of individuals) and bay (10% of individuals). Movements into full sea water were brief when occurring. GAMM models revealed that transitions between habitat areas occurred most often in spring and fall. Environmental data suggest that use of the saline environment is limited by summer temperatures in the bay. Movements may also be related to moon phase. Compared to more northern coastal populations of Brook Trout, the Red Brook population appears to be less anadromous overall, yet the estuarine segment of the system may have considerable ecological importance as a food resource.     

Growth and recruitment dynamics of young‐of‐year northern pike: Implications for habitat conservation and management

Maximising growth during the months after hatching is critical for fishes to surpass predator gape limits, make ontogenetic shifts in diet and increase overwinter survival. Constraints on growth during early life stages can have population and community‐level implications, yet are rarely addressed by habitat restoration or fishery management efforts. To assess environmental controls on larval growth rates, we sampled adult and young‐of‐year (YOY) northern pike (Esox lucius) emigrating from spawning grounds in six tributaries of Lake Michigan. We found that YOY growth rates differed significantly among natal streams, in parallel with variation in hatch date and water temperatures. Within each stream, individual growth rates were positively associated with trophic position, as measured by nitrogen isotope enrichment and gut contents. Earlier hatching individuals also grew faster, but the strength of this relationship varied with warming water temperatures (i.e., 21–27°C). Ageing of adult spawners indicated no differences among streams in average growth rates later in life. Our findings suggest that restoration efforts should replicate ecological conditions found in habitats producing large numbers of fast‐growing YOY. Key habitat attributes include adequate water level throughout the spring spawning season, and stable, warm water temperature conditions. Providing these environments during early life history could enhance the robustness of northern pike populations by boosting fitness from hatching to emigration to adult habitats.     

Summer habitat use and feeding of juvenile Arctic charr,Salvelinus alpinus,in the Canadian High Arctic

Abstract – Owing to limited knowledge of the habitat use and diet of juvenile Arctic charr from the High Arctic, particularly young‐of‐the‐year (YOY), we assembled data obtained from samples taken in and around Lake Hazen, Nunavut, Canada, to assess juvenile habitat use and feeding. Juvenile charr demonstrated a preference for stream environments, particularly those fed by warm upstream ponds. Charr occupying both stream and nearshore lake habitats were found to feed similarly, with chironomids occurring most frequently in diets. Some older stream‐dwelling charr preyed on smaller, younger Arctic charr. Preferred stream occupancy is likely mediated by physical barriers created mainly by water velocity, and by distance from the lake, lake‐ice dynamics, low water depth, and turbidity. Water velocities resulted in stream habitat segregation by size, with YOY mainly found in low‐velocity pools and back eddies adjacent to stream banks, but not in water velocities >0.1 m·s^?1. Greatest charr densities in streams were found in small, shallow, slow‐flowing side channels, which are highly susceptible to drought. Under predicted climate change scenarios, streams fed by small ponds will be susceptible to intermittent flow conditions, which could result in increased competition among juvenile charr for the remaining stream habitats. In addition, glacier‐fed streams are likely to experience increased flow conditions that will exacerbate physical barriers created by water velocity and further reduce the availability of preferred stream habitat.     

Temperature–growth patterns of individually tagged anadromous Arctic charr Salvelinus alpinus in Ungava and Labrador,Canada

Individual measurements of annual, or within‐season growth were determined from tag‐recaptured Arctic charr and examined in relation to summer sea surface temperatures and within‐season capture timing in the Ungava and Labrador regions of Eastern Canada. Differences between two years of growth (2010–2011) were significant for Ungava Bay Arctic charr, with growth being higher in the warmer year. Growth of Labrador Arctic charr did not vary significantly among years (1982–1985). Regional comparisons demonstrated that Ungava Arctic charr had significantly higher annual growth rates and experienced warmer temperatures than Labrador Arctic charr. The higher annual growth of Ungava Bay Arctic charr was attributed to the high sea surface temperatures experienced in 2010–2011 and the localised differences in nearshore productivity as compared to Labrador. Within‐season growth rates of Labrador Arctic charr peaked in June, declined towards August and were negatively correlated with the length of time spent at sea and mean experienced sea surface temperatures. A quadratic model relating growth rate to temperature best explained the pattern of within‐season growth. Collectively, results suggest that increases in water temperature may have profound consequences for Arctic charr growth in the Canadian sub‐Arctic, depending on the responses of local marine productivity to those same temperature increases.     

Growth and production of Pacific ocean perch (Sebastes alutus) in nursery habitats of the Gulf of Alaska

Nursery areas for juvenile fishes are often important for determining recruitment in marine populations by providing habitats that can maximize growth and thereby minimize mortality. Pacific ocean perch (POP, Sebastes alutus) have an extended juvenile period where they inhabit rocky nursery habitats. We examined POP nursery areas to link growth potential to recruitment. Juvenile POP were captured from nursery areas in 2004 and 2008, and estimated growth rates ranged from ?0.19 to 0.60 g day^?1 based on differences in size between June and August. Predicted growth rates from a bioenergetics model ranged from 0.05 to 0.49 g day^?1 and were not significantly different than observed. Substrate preferences and the distribution of their preferred habitats were utilized to predict the extent of juvenile POP nursery habitat in the Gulf of Alaska. Based on densities of fish observed on underwater video transects and the spatial extent of nursery areas, we predicted 278 and 290 million juvenile POP were produced in 2004 and 2008. Growth potential for juvenile POP was reconstructed using the bioenergetics model, spring zooplankton bloom timing and duration and bottom water temperature for 1982–2008. When a single outlying recruitment year in 1986 was removed, growth potential experienced by juvenile POP in nursery areas was significantly correlated to the recruitment time‐series from the stock assessment, explaining ～30% of the variability. This research highlights the potential to predict recruitment using habitat‐based methods and provides a potential mechanism for explaining some of the POP recruitment variability observed for this population.     

Spatial and temporal variation in brook trout and brown trout proportional stock densities in Wisconsin streams

Abstract  Proper interpretation of measures used to describe fish populations requires knowledge of the measure's inherent spatial and temporal variation. Proportional stock density (PSD), the ratio of 'quality-length' fish to 'stock-length' fish multiplied by 100, is commonly used as a measure of population size structure; PSD values range from 0 to 100. Spatial and temporal variation in brook trout, Salvelinus fontinalis (Mitchill), and brown trout Salmo trutta L., PSD scores in Wisconsin are described and tested to determine if variation differed by stream order and ecoregion. Neither stream order nor ecoregion significantly affected variation of PSD scores. The mean standard deviation of PSD scores over time at a site was 12.49 for brook trout populations and 12.95 for brown trout populations. The mean standard deviation of PSD scores between sites in the same stream was 15.07 for brook trout populations and 12.50 for brown trout populations. Sampling frequency required to characterise a PSD score of a single population of trout in Wisconsin streams with a degree of precision equal to the amount of observed temporal variation is approximately 14 sites for brook trout and 20 sites for brown trout.