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Zeb Tonkin Adrian Kitchingman Ben Fanson Jarod Lyon Renae Ayres Joanne Sharley Wayne M. Koster Justin O'Mahony Graeme Hackett Paul Reich Robin Hale 《水产资源保护:海洋与淡水生态系统》2020,30(7):1385-1396
- Removal of instream woody habitat (IWH) is one factor attributed to declines in fish populations worldwide. Restoration of IWH to help fish populations recover is now common; however, quantitative predictions about the outcomes of these interventions is rare. As such, quantitative links between IWH and fish abundance is of interest to managers to inform conservation and restoration activities.
- Links between instream habitat attributes, especially IWH, and selected fish species of recreational, cultural, and ecological significance were explored at 335 sites spanning eight streams across south‐eastern Australia. Data were collected on fish abundance and length, IWH density and a range of other habitat attributes at a scale that incorporated at least one of each of the major mesohabitat types (functional river elements). The data were analysed using Bayesian hierarchical generalized linear mixed models to examine fish habitat associations and used to make quantitative predictions of responses to future restoration.
- Strong positive relationships were found between fish abundance and IWH density and the strength of this relationship varied between species and waterways. Murray cod (Maccullochella peelii), a species commonly targeted by IWH interventions, displayed the strongest association with IWH density. River blackfish (Gadopsis marmoratus) also showed a significant relationship with IWH, but this effect was waterway specific. Fish length was only related to IWH for river blackfish. These results may reflect differences in the life histories of these two species. We suggest that differences in habitat association through ontogeny may be more relevant at smaller spatial scales.
- The results generated in this study can be used to guide waterway restoration and develop quantitative predictions about how fish might respond to IWH interventions across south‐eastern Australia. This approach provides a powerful quantitative framework within which to explore management options and objectives, and to test our predicted responses to habitat restoration.
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- Habitat loss and degradation together represent one of the five major factors contributing to the rapid decline of the Yangtze finless porpoise in the Yangtze River. Protecting key habitat patches and maintaining migration corridors between habitat patches are major conservation objectives to ensure the in situ viability of the Yangtze finless porpoise. Baseline information essential for addressing these two objectives includes that pertaining to distribution and habitat preference.
- To investigate the distribution and habitat preferences of the Yangtze finless porpoise, five transect surveys were conducted in the Anqing section of the Yangtze River, which has the highest porpoise density among all sections of the river. Porpoise abundance estimates were calculated, and preferences for different habitat types were evaluated.
- The calculated porpoise abundance in the Anqing section was 181 (95% CI 125–239) animals on average. The inter‐annual and inter‐seasonal differences in porpoise abundance estimates were not significant. The natural river banks and sandbar shores were the most preferred habitats, representing 46.3 and 29.8% of the porpoise observations, respectively. In contrast, 8.1% of the porpoises were observed in habitats along reinforced river banks, which account for 38.7% of the total coastline. In subsections with natural habitat patches, porpoises were observed in almost every survey, while porpoise occurrence became highly stochastic in subsections with long reinforced river banks. These results indicate a significant tendency of the Yangtze finless porpoise to prefer natural habitats with natural river bank or sandbars but to keep away from reinforced river‐bank habitats.
- According to porpoise density in different subsections, free migration may be impeded or only one migration corridor remains in some subsections.
- Although protecting finless porpoise habitats has become a primary conservation objective, this study highlights the need to protect frequently used habitat patches and migration corridors, particularly those near natural river banks and sandbars, and to restore ecological environments along reinforced river banks.
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- 1. An abundance gradient from high inside to low outside a no‐take marine reserve may indicate net emigration of adult fish from the reserve (‘spillover’).
- 2. We examined spatial patterns of abundance of fish across two ～900 m long sections of coral reef slope at each of two small Philippine islands (Apo and Balicasag). One section sampled the entire length of a no‐take reserve and extended 200–400 m outside the two lateral reserve boundaries. The other section, without a reserve, was a control. The reserves had had 20 (Apo) and 15 (Balicasag) years of protection when sampled in 2002.
- 3. Significant spatial gradients of decreasing abundance of target fish occurred across only one (Apo Reserve northern boundary = ARNB) of four real reserve boundaries, and across none of the control ‘boundaries’. Abundance of non‐target fish did not decline significantly across reserve boundaries.
- 4. Abundance of target fish declined sharply 50 m outside the ARNB, but enhanced abundance extended 100–350 m beyond this boundary, depending on fish mobility.
- 5. Density of sedentary target fish declined 2–6 times faster than density of highly vagile and vagile target fish across the ARNB.
- 6. Habitat factors could not account for these ARNB results for target fish, but did influence abundance patterns of non‐target fish.
- 7. The lack of abundance gradients of target fish at Balicasag may reflect reduced fishing outside the reserve since it was established.
- 8. Apo Reserve had a gradient of abundance of target fish across at least one boundary, a result consistent with spillover.
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- 1. Detailed knowledge of habitat requirements is particularly relevant to the conservation of rare and threatened fish species because habitat fragmentation and loss are usually the major threats to species with limited distributions and restricted habitat requirements, and habitat restoration is typically the first step in species' recovery plans. This paper documents the macro‐, meso‐ and microhabitat habitat associations of a small threatened percichthyid, the Oxleyan pygmy perch, Nannoperca oxleyana, in south‐eastern Queensland and north‐eastern New South Wales (NSW), Australia.
- 2. The species' range encompasses approximately 530 km of coastline from Coongul Creek on Fraser Island, Queensland (25° 16′S, 153° 09′E) south to Tick Gate Swamp near the township of Wooli, NSW (29° 54′S, 153° 15′E). It is confined primarily to dystrophic, acidic, freshwater systems draining through sandy coastal lowlands and Banksia ‐ dominated heath ecosystems.
- 3. Both lentic and lotic environments provide habitat for N. oxleyana but the species is found only in slow‐flowing pools and backwaters of river channels and tributaries as well as in swampy drainages, lakes, ponds and dams.
- 4. Trapping studies found that an abundance of structural aquatic habitat was a defining microhabitat feature either in the form of beds of emergent or submerged plants or the presence of steep/undercut banks fringed with the semi‐submerged branches and fine rootlets of riparian vegetation. When present, leaf litter and snags also provided cover.
- 5. Recent and historical survey data suggest that human activities have had a significant influence on contemporary species presence/absence patterns and may have been responsible for the prominent gaps within the Queensland‐NSW distribution of N. oxleyana.
- 6. The distinctive relationships of N. oxleyana with features of aquatic habitat at the macro‐, meso‐ and microhabitat scale demonstrate principles applicable to any study focused on the conservation of an endangered fish species.
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- 1. Incised stream channel aquatic habitats typically are severely degraded. After the primary knickpoints or knickzones have passed, base flows are limited to shallow channels flanked by sandy berms within the enlarged high-flow channel. Riparian vegetation, woody debris and pool habitat are in short supply, and stream systems become disengaged from their floodplains.
- 2. We hypothesized that habitat recovery might be accelerated in channels that have incised and are regaining equilibrium through deposition of sandy berms by placing rock spurs in the channel and by planting woody vegetation on the berms. On the basis of literature review and a pilot study, planting designs were developed for a large-scale field experiment: 2550 1.5 m long cuttings of native willow (Salix spp.) 2–25 cm in diameter were planted 1–1.2 m deep along the base-flow channel of an incised stream. A ridge of stone was placed on the water side of the plantings, and 17 rock spurs were constructed by extending existing spur dikes from the opposite bank.
- 3. Woody cover along the treated bank increased from 38% to 66% of bankline after one growing season. Survival of individual plantings was reduced from an estimated 60% to an observed 34% by competition from the exotic kudzu vine, Pueraria lobata. Mean depth and mean scour hole depth, corrected for stage variation, increased 44% and 82%, respectively. Mean scour hole width increased 130%. The mean length of fish and the number of fish species approximately doubled, while the total weight of fish captured by a unit of sampling effort increased by an order of magnitude.
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- 1. A classification scheme for ecohydraulic‐based mesohabitat units was developed for a summer low‐flow period. Mesohabitat unit designations were based on the integration of three‐dimensional channel hydraulics, geomorphic maintenance processes of bed morphology, and biological resource needs of fish. Ecological relevance of the units was evaluated by a study of fish mesohabitat use patterns, and species relationships to feeding guild. By portraying the stream as a mosaic of hydraulic habitat patches that provide specific biotic resource needs, this study's aim was to advance how ecological information may be incorporated into the stream restoration design process.
- 2. Nine mesohabitat units were designated, including pool‐front, ‐mid, and ‐rear units, scour pool, simple and complex riffles, glide, submerged point bar, and channel expansion marginal deadwater. Physical habitat structure differed among the nine mesohabitat units by length, water depth, and bed slope and complexity. Fish were collected in specific unit volumes by use of prepositioned areal electrofishing devices, in which distinct patterns of fish mesohabitat use were observed.
- 3. A key finding was the differences in fish assemblages among the pool units, in which fish densities were greatest in the pool‐front and scour pool units. Also, fish density in the pool‐front unit was positively correlated with pool entrance slope. Biomass was greatest in the pool‐front and ‐mid units, and it was correlated with maximum mid‐pool depth. Density and biomass were generally lowest in the pool‐rear unit. Other unique relationships were also observed among the mesohabitat units.
- 4. Based on feeding guild, patterns of fish mesohabitat use were observed for this summer low‐flow period; insectivores dominantly used pool‐front and scour pool units, herbivores dominantly used complex riffle units, and piscivores used pool‐front and ‐mid units.
- 5. Useful ecological information was derived from fish species‐habitat relationships observed in this study, linking mesohabitat units with species requirements for food resources. Such findings support advancements to ecological design strategies for stream restoration that promote hydraulic habitat diversity.
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Nixie C. Boddy Kevin M. Fraley Helen J. Warburton Phillip G. Jellyman Doug J. Booker Dave Kelly Angus R. McIntosh 《水产资源保护:海洋与淡水生态系统》2020,30(1):159-172
- Abstractions and diversions are prevalent in river networks worldwide; however, specific mechanisms and measures reflecting changes in functional characteristics of aquatic assemblages in response to flow abstraction have not been well established. In particular, the influence of small takes on fish assemblages is poorly understood.
- Field surveys and stable‐isotope analyses were used to evaluate the impact of differing levels of flow abstraction on fish assemblage structure, and native–non‐native patterns of coexistence, associated with small surface water abstractions in four streams in New Zealand. Study design accounted for longitudinal processes (spatial autocorrelation) to isolate the effects of abstractions on fish assemblages.
- Reaches with reduced flows downstream of abstraction points had significantly lower fish abundances per metre of stream length, probably because of decreased habitat size, altered interspecific interactions and barriers to movement. The loss of larger fish in reaches with high abstraction resulted in shallower mass–abundance slopes and shorter stable isotope‐derived food‐chain lengths, likely to have been caused by fewer trophic links in the food web. The large fish absent from these reaches were flow‐sensitive introduced salmonids, resulting in higher relative abundances of small‐bodied native fish, probably as a result of predatory and competitive release.
- Quantification of metrics designed to characterize ecosystem functioning as well as abundance and species composition indicated that small water abstractions can alter both the structure and composition of stream fish assemblages and modify the outcomes of native–non‐native species interactions. Thus, a better understanding of the effects of small abstractions could be used to improve the strategic management of fish in invaded riverscapes.
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- 1. Studies dealing with the fish fauna of coastal streams are scarce in the scientific literature, particularly those from Mediterranean climates. Owing to their small size, these systems suffer extreme seasonal fluctuations, following the typical Mediterranean flood–drought cycle and leading to a high risk of extinction to freshwater fish.
- 2. This work analyses fish distribution in 14 stream stretches belonging to eight basins in the northern sector of the Strait of Gibraltar (southern Spain). Fish–habitat relationships were studied through multivariate ordination techniques at two scales: basin and stretch.
- 3. A principal components analysis clearly discriminated larger and more sinuous basins from smaller and steeper ones. This ordination was related to the non‐migratory freshwater fish species richness and to the total number of fish species present in the middle reaches of each basin.
- 4. The main sources of variation in community composition and habitat characteristics in the different stretches were related to a clear upstream–downstream gradient, along which total species richness increased.
- 5. These small coastal basins are inhabited by two highly endangered species, Andalusian toothcarp (Aphanius baeticus) and Iberian chub (Squalius pyrenaicus), and have similar or higher overall freshwater species richness than larger adjacent basins. The near absences of flow regulation and introduced species make these streams one of the few types of Iberian aquatic system where unaltered fish–habitat relationships can be studied.
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- 1. Habitat suitability criteria that fail to incorporate temporal variability in habitat preferences of stream fish may mis‐represent critical habitat requirements and lead to setting of inappropriate flow targets when used in instream flow assessments. Developing suitability criteria from daytime observations alone relies on the assumption that habitat preferences are constant over the diel cycle. Few studies have tested these assumptions, particularly for small‐bodied, cryptic, benthic species.
- 2. During summer in two gravel‐bed rivers, bluegill bullies (Gobiomorphus hubbsi), torrentfish (Cheimarrichthys fosteri) and upland bullies (Gobiomorphus breviceps) exhibited strong preferences with respect to water depth, velocity and substratum size. All three species underwent a diel shift in microhabitat preference for at least two of these variables.
- 3. Microhabitat preferences were generally weaker when fish were active at night; bluegill bullies, upland bullies and especially torrentfish were observed over a broader range of depths, velocities and substratum sizes at night than during the day. Observations of fish in a stream simulator confirmed that bluegill bullies and torrentfish showed a preference for runs at dusk and return to riffles before dawn, but habitat preferences of upland bullies remained static across the diel cycle.
- 4. Diel microhabitat shifts affected the assessment of flow requirements. Instream habitat analysis of the Waipara River using separate day and night suitability criteria predicted differing amounts of habitat available at a given flow, and the relationships between fish abundance, fish density and flow. The presence of diel microhabitat shifts in stream fishes suggests that instream habitat analyses will produce more effective and defensible flow recommendations when patterns of nocturnal microhabitat preferences are known and critical habitat bottlenecks can be identified. Copyright © 2011 John Wiley & Sons, Ltd.
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Syed Ainul Hussain 《水产资源保护:海洋与淡水生态系统》2009,19(2):127-133
- 1. The species diversity of inland waters is among the most threatened of all ecosystems and in many parts of the world it is in continuing and accelerating decline. Such decline could be restrained by acknowledging the scope of target species, so that all relevant stages in their life cycle are considered.
- 2. The gharial Gavialis gangeticus is a prominent riverine species of the Indus, Ganges, Brahmaputra and Mahanadi river systems that is becoming increasingly rare due to reduction in water flow and available nesting beaches, modification of river morphology and increased mortality in fishing nets. Despite these threats, scientific information on habitat selection by gharial is still inadequate, which hinders conservation measures.
- 3. This paper presents the population status, basking site selection and water depth preferences of different size‐classes of gharial based on a study conducted in the National Chambal Sanctuary, India.
- 4. Between 1992 and 2007 a 40% decline in the gharial population was observed in the National Chambal Sanctuary. The decline was prominent in the recruitment class (<120 cm), which primarily comes from the nests laid in the wild, and also in sub‐adults (>180 to 270 cm) comprising both wild and reintroduced gharial.
- 5. Along the Chambal River, gharial preferred sandy parts of the river banks and sand bars for basking and showed less preference for rocky river banks and rocky outcrops. Clay river banks were least preferred.
- 6. Juvenile gharials <120 cm and 120–180 cm preferred water depths 1–3 m and 2–3 m, respectively. Gharial >180 cm (including sub‐adults and adults) preferred water depths >4 m.
- 7. Increasing demands for sand for development activities, and water abstraction for irrigation and energy generation coupled with mortality in fishing nets, are likely to affect gharial and other aquatic species, and steps need to be taken to maintain the minimum river flow necessary to sustain ecosystem processes.
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Travis Keenan Sterne David Retchless Rebecca Allee Wesley Highfield 《水产资源保护:海洋与淡水生态系统》2020,30(4):846-859
- Effective management of marine resources requires an understanding of the spatial distribution of biologically important communities.
- The north‐western Gulf of Mexico contains diverse marine ecosystems at a large range of depths and geographic settings. To better understand the distribution of these marine habitats across large geographic areas under consideration for marine sanctuary status, presence‐only predictive modelling was used.
- Results confirmed that local geographic characteristics can accurately predict the probability of occurrence for marine habitat types, and include a novel technique for assigning a single, most likely habitat in areas where multiple habitats are predicted.
- The highest resolution bathymetric data (10 m) available for the region was used to develop raster layers that represent characteristics that have been shown to influence species occurrence in other settings.
- A georeferenced historical photo record collected via remotely operated vehicle was classified according to six commonly found mesophotic habitats across the 18 reefs and banks under consideration for Flower Garden Banks National Marine Sanctuary boundary expansion.
- Using maximum entropy modelling, the influence of local geographic characteristics on the presence of these habitats was measured and a spatial probability distribution was developed for each habitat type across the study area.