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1.
2.
  1. The freshwater pearl mussel (Margaritifera margaritifera) and the thick‐shelled river mussel (Unio crassus) are relatively widespread across Europe, but are strongly declining and are now protected by the European Habitats Directive. In the course of this study, 20 pearl mussel and 14 thick‐shelled river mussel streams in Bavaria, Germany, were investigated.
  2. The mussel populations were mapped to determine population size and age structure. For the assessment of habitat quality, host fish abundance and physicochemical parameters were investigated, e.g. substratum quality, water chemistry, redox potential, and turbidity. Furthermore, potential risks for the populations such as predation or river maintenance were also recorded and assessed.
  3. The average population size and recruitment rates of M. margaritifera populations were lower than in U. crassus populations, with 3517 (2.2% juveniles) compared with 5566 (41.4% juveniles) individuals, respectively. On average, 22.3% of particles were smaller than 0.85 mm in diameter at M. margaritifera sites, whereas the mean proportion of fine particles at U. crassus sites was twice as high, at 41.3%. Other parameters such as redox potential or electric conductivity also indicated more favourable habitat conditions in M. margaritifera streams. Unio crassus seems to be less vulnerable to adverse substratum texture and increased nutrient levels than M. margaritifera.
  4. The main threats for U. crassus were physical habitat destruction, predation by muskrat, or a lack of host fish, whereas M. margaritifera mainly suffered from siltation leading to a lack of oxygen supply to the interstitial zone, affecting recruitment. Consequently, conservation strategies need to be species‐specific and address stream‐specific reasons for decline. As a basis, accurate and comparable monitoring data are necessary, which implies the standardization of monitoring protocols.
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3.
Abstract –  The crystal darter, Crystallaria asprella (Jordan), is a benthic, riverine specialist, rare throughout its range and critically imperiled in the state of Mississippi. Construction of the Tennessee–Tombigbee Waterway has fragmented a once continuous population of this species into several subpopulations in remaining, free-flowing tributaries of the system. In spite of this fragmentation and population subdivision, we collected numerous individuals from the waterway during summer 2004 and 2005. Because of the lentic conditions in the waterway, we questioned whether a dietary shift accompanied darters occupying this new environment. We also obtained museum specimens from the Tombigbee River before waterway construction and quantified and compared diets among the historical, tributary (contemporary) and waterway specimens. We hypothesised that waterway specimens would differ significantly in diet from both historical and tributary specimens, and that the latter two groups would have similar diets. Multiresponse permutation procedures indicated that all three groups were significantly different from each other and indicator species analysis identified significant indicator taxa for waterway and tributary specimens. Using a null model approach, dietary overlap was significantly greater than expected for tributary and waterway specimens, and significantly less than expected for waterway and historical specimens. Dietary plasticity was evident for crystal darters across space and time, but it remains unknown whether waterway individuals represent a population sink or are actively dispersing from nearby population sources.  相似文献   

4.
  • 1. This paper documents a diverse, reproducing freshwater mussel community (20 species) in Lower Lake — an impounded, regulated portion of the Little Tallahatchie River below Sardis Dam in Panola Co., Mississippi, USA.
  • 2. Despite being regulated and impounded, the lake has a heterogeneous array of habitats that differ markedly in mussel community attributes. Four distinct habitat types were identified based on current velocity and substrate characteristics, representing a gradient from habitats having lotic characteristics to lentic habitats. All four habitat types supported mussels, but habitats most resembling unimpounded, lotic situations (relatively higher current velocity and coarser substrate) had the highest mussel abundance and species density (10.1 mussels m?2, 1.8 species m?2, respectively). Lentic habitats (no flow, fine substrate) were characterized by lower abundance and species density (2.0 mussels m?2, 0.8 species m?2, respectively), but supported mussel assemblages distinctive from lotic habitats.
  • 3. Evidence of strong recent recruitment was observed for most species in the lake and was observed in all four habitat types.
  • 4. Although impounded and regulated, Lower Lake represents one of the few areas of stable large‐stream habitat in the region. The presence of a diverse, healthy mussel community in this highly modified habitat suggests that a large component of the regional mussel fauna is relatively resilient and adaptable and is limited primarily by the absence of stable river reaches. Management actions that increase stream stability are likely to result in expansion of the mussel fauna and restoration of a valuable component of ecosystem function in this region.
Published in 2006 by John Wiley & Sons, Ltd.  相似文献   

5.
  • 1. The freshwater pearl mussel, Margaritifera margaritifera, is a threatened species. One of the threats faced by this species is direct extermination by poachers, and therefore some researchers conceal information on the locations of pearl mussel habitats. For example, some researchers do not publish the names of the rivers where pearl mussels occur, whereas other researchers do.
  • 2. Concealing the names of rivers containing pearl mussels makes them unknown not only to potential offenders but also to administrators, nature conservation practitioners, and ordinary citizens. As a result, no protection measures are undertaken, which is all the more regrettable as damage to pearl mussel habitats can occur accidentally.
  • 3. Concealing details of the location of pearl mussel habitats in publications has an adverse impact on the work of specialists, as they do not have access to enough information to study and analyse the biology and distribution of these molluscs.
  • 4. One river with pearl mussels in the Gulf of Finland was initially described anonymously (as ‘River B’). Unfortunately, the river was subject to severe human impact, and the largest aggregation of pearl mussels was almost exterminated in the process of constructing a new electric supply line.
  • 5. Concealing information on pearl mussel habitats in the Russian section of the Baltic Sea basin was also shown to have been a poor decision. Although the threat from potential poachers was insignificant because of the low commercial value of pearl mussels, the authorities remained uninformed about the existence of valuable habitats.
  • 6. The question of whether the locations of pearl mussel habitats should be concealed or revealed in scientific publications does not have an unambiguous answer and should be considered on a case‐to‐case basis; however, the cases for which disclosure is reasonable seem to be more numerous.
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6.
  1. Amphidromy is a form of migratory life history typified by the reproduction of fish in freshwater environments, the early downstream dispersal of post‐hatch larvae to marine environments, and the return of small‐bodied young juveniles to freshwater environments for growth to adulthood. Island freshwater fish communities are frequently dominated by fish species with amphidromous life histories.
  2. Amphidromous life cycles leave fish communities highly susceptible to habitat modification and disruptions to connectivity across marine and freshwater environments. This means that managing waterway connectivity is fundamental to their conservation; however, the unique and often geographically restricted amphidromous communities that characterize many small island nations have received little consideration in the development of strategies for the management of fish passage.
  3. The ecology and locomotory capabilities of amphidromous species are often poorly studied, partly because their small size at migratory life stages renders current state‐of‐the‐art in situ biotelemetry methods unsuitable. The small size of fish also means that seemingly small obstructions can severely impede migrations.
  4. The steps necessary to advance the management of fish passage for island fish communities are: curating and maintaining barrier inventories; evaluating barrier permeability; developing effective barrier mitigation options; and prioritizing restoration and conservation efforts.
  5. New methods for understanding the ecology and locomotory capabilities and behaviour of amphidromous fishes are required to advance the management of fish passage for island fish communities. Fish passage solutions that imitate natural streams, such as those promoted in new guidelines in New Zealand, may be the most effective way of improving waterway connectivity; however, integrated approaches to freshwater fish conservation that account for meta‐population dynamics, in combination with the management of fish passage, are necessary to optimize conservation outcomes for amphidromous species.
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7.
  1. Removal of instream woody habitat (IWH) is one factor attributed to declines in fish populations worldwide. Restoration of IWH to help fish populations recover is now common; however, quantitative predictions about the outcomes of these interventions is rare. As such, quantitative links between IWH and fish abundance is of interest to managers to inform conservation and restoration activities.
  2. Links between instream habitat attributes, especially IWH, and selected fish species of recreational, cultural, and ecological significance were explored at 335 sites spanning eight streams across south‐eastern Australia. Data were collected on fish abundance and length, IWH density and a range of other habitat attributes at a scale that incorporated at least one of each of the major mesohabitat types (functional river elements). The data were analysed using Bayesian hierarchical generalized linear mixed models to examine fish habitat associations and used to make quantitative predictions of responses to future restoration.
  3. Strong positive relationships were found between fish abundance and IWH density and the strength of this relationship varied between species and waterways. Murray cod (Maccullochella peelii), a species commonly targeted by IWH interventions, displayed the strongest association with IWH density. River blackfish (Gadopsis marmoratus) also showed a significant relationship with IWH, but this effect was waterway specific. Fish length was only related to IWH for river blackfish. These results may reflect differences in the life histories of these two species. We suggest that differences in habitat association through ontogeny may be more relevant at smaller spatial scales.
  4. The results generated in this study can be used to guide waterway restoration and develop quantitative predictions about how fish might respond to IWH interventions across south‐eastern Australia. This approach provides a powerful quantitative framework within which to explore management options and objectives, and to test our predicted responses to habitat restoration.
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8.
  1. Intensive agricultural land use may have adverse impacts on freshwater mussel assemblages.
  2. Before European settlement, the Minnesota River Basin (MRB) was home to dense and diverse assemblages of freshwater mussels. Of the 40 species that occurred there, 43% have been extirpated. the St. Croix Basin (SCB) in Minnesota/Wisconsin, in contrast, has maintained a dense and diverse mussel assemblage, probably owing to the maintenance of a higher‐quality ecosystem.
  3. Mussels were sampled in four rivers representing an agricultural land‐use gradient. Timed searches were conducted in each of three rivers of the MRB, and in one river in the SCB in 2015. These were previously sampled by the Minnesota Department of Natural Resources (1998–2008).
  4. Mussel abundance and richness were lower in the MRB compared with the SCB. There were negligible changes in mussel density in the SCB, whereas abundances declined 17–83% in the MRB over the same period. Rates of decline were greatest for rivers with higher agricultural land use. Individuals of species that inhabited both basins were larger in tributaries with higher agricultural land use.
  5. MRB rivers with increased agricultural land use harboured a greater proportion of individuals displaying opportunistic (low life‐span, age and high fecundity) and periodic life‐history traits (moderate to high growth rates, low to intermediate fecundity, life span and age at maturity), whereas SCB assemblages had a greater percentage of mussels displaying equilibrium life‐history traits (long life‐span, late maturity and low reproductive effort). Also, rivers with higher amounts of suspended sediment contained more individuals classified as disturbance tolerant.
  6. This study provides evidence that agricultural land use contributes to the loss of mussel diversity and abundance, especially in mussel species that are long lived or slow to reproduce. These life‐history traits may be correlated with increased sensitivity to disturbances commonly observed in agricultural basins, including more and larger flood events.
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9.
10.
  1. In spite of their conservation importance, only a fraction of lakes and streams globally – including their catchments – are currently covered by conservation areas. To identify conservation gaps, assessing the spatial distribution of biodiversity in relation to conservation areas is a promising approach. A gap‐analysis approach was used to evaluate the protection status of the habitats of two endangered freshwater mussel species, Margaritifera margaritifera (Linnaeus, 1758) and Unio crassus (Philipsson, 1788), in the Federal State of Bavaria, Germany.
  2. First, ecological niche models (ENMs) were developed for both mussel species based on presence‐only data in order to identify suitable habitats. Second, binary maps of suitable and unsuitable habitats for the species were used to compare different categories of currently protected areas in a gap analysis.
  3. The ENMs for M. margaritifera revealed a spatially restricted distribution with good model performance, whereas the spatial distribution of U. crassus was wider and the model performance was weaker. For M. margaritifera, a higher percentage of suitable habitat is already under some sort of protection, whereas for U. crassus only half of the suitable habitats are under protection.
  4. The results suggest that suitable habitats of both species are not sufficiently protected. More effective conservation of M. margaritifera and U. crassus requires separate management: increasing the respective protection categories of already protected habitats of M. margaritifera and incorporating an increased area of suitable habitats under legal protection for U. crassus.
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11.
  1. Deforestation can modify stream habitat and the functional structure of fish assemblages. The aims of this study were (a) to identify whether deforestation has a similar effect on local habitats from two biogeographically distinct river basins in a tropical region; (b) to identify how fish trait–habitat relationships were influenced by deforestation; and (c) to compare functional redundancy patterns in these basins.
  2. Environmental and biological variables were obtained for 160 stream reaches, 85 located in the Alto Paraná River basin and 75 in the Machado River basin. Traits were associated with body size, habitat preference, food items and foraging period. Linear models were constructed to verify the environmental convergence of habitats across streams from the Alto Paraná and the Machado basins. An RLQ and a fourth‐corner analysis were conducted to investigate how deforestation affected habitat variables and trait–habitat relationships. The nearest relative index (NRI) was used as a functional redundancy measure.
  3. Deforestation led to a similar habitat gradient from streams with a higher proportion of coarse roots in more forested catchments to streams with streamside grasses, bare soil and unconsolidated substrate in more deforested catchments; however, a general pattern of fish trait–habitat relationships was not identified across basins. Functional redundancy was associated with a long history of habitat loss in the Alto Paraná streams, whereas functional complementarity was related to more recent and less intense habitat loss in Machado streams.
  4. We believe that differences in regional species pools and historical processes between the basins influenced the fish functional responses to deforestation. Nevertheless, the results highlighted the importance of stream habitat heterogeneity and the presence of preserved forest fragments in a region to prevent the loss of unique traits. Decision‐makers should therefore maintain large forest fragments and restore riparian forests to preserve stream habitat and the functional structure of fish assemblages.
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12.
  1. Habitat loss and degradation together represent one of the five major factors contributing to the rapid decline of the Yangtze finless porpoise in the Yangtze River. Protecting key habitat patches and maintaining migration corridors between habitat patches are major conservation objectives to ensure the in situ viability of the Yangtze finless porpoise. Baseline information essential for addressing these two objectives includes that pertaining to distribution and habitat preference.
  2. To investigate the distribution and habitat preferences of the Yangtze finless porpoise, five transect surveys were conducted in the Anqing section of the Yangtze River, which has the highest porpoise density among all sections of the river. Porpoise abundance estimates were calculated, and preferences for different habitat types were evaluated.
  3. The calculated porpoise abundance in the Anqing section was 181 (95% CI 125–239) animals on average. The inter‐annual and inter‐seasonal differences in porpoise abundance estimates were not significant. The natural river banks and sandbar shores were the most preferred habitats, representing 46.3 and 29.8% of the porpoise observations, respectively. In contrast, 8.1% of the porpoises were observed in habitats along reinforced river banks, which account for 38.7% of the total coastline. In subsections with natural habitat patches, porpoises were observed in almost every survey, while porpoise occurrence became highly stochastic in subsections with long reinforced river banks. These results indicate a significant tendency of the Yangtze finless porpoise to prefer natural habitats with natural river bank or sandbars but to keep away from reinforced river‐bank habitats.
  4. According to porpoise density in different subsections, free migration may be impeded or only one migration corridor remains in some subsections.
  5. Although protecting finless porpoise habitats has become a primary conservation objective, this study highlights the need to protect frequently used habitat patches and migration corridors, particularly those near natural river banks and sandbars, and to restore ecological environments along reinforced river banks.
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13.
  • 1. Microhabitat preferences of freshwater mussels and associated substrate characteristics were investigated across a range of geomorphic reaches in the Hawkesbury–Nepean River, Australia.
  • 2. The structure of substratum patches available was strongly influenced by geomorphic reach type. In each reach type, mussel distribution was most frequently correlated with coarse sand and a roughness element characteristic for that reach. Roughness elements such as boulders and cobbles create a flow refuge and were linked with mussel size.
  • 3. Small mussels tended to be associated with boulder‐stabilized habitats and medium sized mussels with cobble habitats. Large mussels rarely co‐occurred with any particular roughness element. Individual species were strongly linked to geomorphic reach type. This association may be due to species' differences in ability to colonize available microhabitat types.
  • 4. The highly tolerant Velesunio ambiguus dominated shale reaches, characterized by fine sediments and human impacts. In contrast, Hyridella depressa dominated in gorges, utilizing small flow refuges among boulders, while H. australis were present in low densities across a range of substrate conditions.
  • 5. The persistence of multispecies assemblages in mussel beds throughout the Hawkesbury–Nepean River implies similar niche utilization among species. Partitioning of habitats across species on the basis of size suggests some degree of habitat selection, or differential survival. At the local scale, microhabitat characteristics influenced the size distribution and densities of mussel assemblages. Continuing declines in mussel densities are likely to result from ongoing channel modification and increased siltation resulting from changes to riparian vegetation.
Copyright © 2008 John Wiley & Sons, Ltd.  相似文献   

14.
  1. Glossy, broad‐leaved, evergreen (lucidophyllous) forests are found mainly in humid subtropical regions of East Asia and are recognized as a biodiverse biome harbouring numerous endemic species. To date, however, few studies have considered the conservation importance of rivers draining these unique environments. In this study, lotic Odonata were used as indicators to examine factors affecting riparian forest–stream linkages in a lucidophyllous forest in south‐western Japan.
  2. Lotic odonates of 10 species, including seven endemic species, and their habitats were studied along 30 stream reaches with varying environmental characteristics.
  3. Odonate species richness was greatest in shadier reaches as well as in heterogeneous locations in larger streams. In contrast, larger streams modified by channel enlargement for flood control had few or no odonate species.
  4. Protecting larger streams with less human impact and streams in dense riparian forest are the best options for conserving lotic odonates and their habitats in this globally unique forest type.
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15.
  1. Freshwater pearl mussels (family Margaritiferidae) are sensitive to human impact and environmental changes. Large declines in their abundance have prompted studies of distribution and estimations of population densities.
  2. Iturup Island, a part of Kuril Islands, Russia, is considered to be within the distribution area of freshwater pearl mussels, but this information is based on only two specimens collected several decades ago. Detailed survey of the island is challenging as most of its territory is nearly impassable.
  3. A preliminary analysis of island rivers was carried out prior to the surveys to discover potential freshwater pearl mussel habitats. Based on previous experience from European Russia, freshwater pearl mussel habitat was expected to occur in rivers flowing out of lowland lakes.
  4. Live individuals of Margaritifera laevis were found during surveys in one river together with the unionid Beringiana beringiana, which were also found in two other rivers where the predicted habitat occurred. Based on prediction and surveys, the occurrence of freshwater pearl mussels in other rivers of Iturup Island is unlikely.
  5. Pearl mussels were concentrated in a small section of the Zmeika River with a population of about 100,000 mussels. Present threats to the population include overharvest of host fish masou salmon (Oncorhynchus masou).
  6. Surveys using similar methods can help to reveal unknown freshwater mussel populations on other Kuril Islands and on the mainland.
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16.
  1. Terrapins are integral to many freshwater ecosystems, yet are imperilled at a global scale. In Sri Lanka, terrapins are understudied; thus, much of their natural history and distribution status remain unknown. Such paucity of studies impedes conservation.
  2. In this study, 79 freshwater habitats located outside the protected area network of south‐western Sri Lanka were surveyed to document current population densities and habitat use of two terrapin species: Indian black terrapin (Melanochelys trijuga thermalis ) and flap‐shelled terrapin (Lissemys ceylonensis ). Local inhabitants were interviewed to assess human threats towards terrapins.
  3. Both species were recorded in low densities: 1–2 individuals ha?1. Indian black terrapin was found in half of the surveyed sites while flap‐shelled terrapin occurred in one‐third of the surveyed sites. Highly urbanized river basins had the lowest densities for both species while rural basins supported higher numbers. Basking was the predominant behaviour of both species and large woody debris and boulders were preferred as basking substrates, together with sparse‐canopy aquatic habitats with intact marshlands.
  4. Overharvesting for meat was a major threat for terrapins. Most local inhabitants were unaware of legislation on terrapin conservation and the ecological importance of terrapins. Human threats such as pollution, modification of aquatic and wetland habitats, and loss of riparian forests were frequently observed in surveyed sites. Terrapin populations outside the protected area are at risk as evidenced by lower population densities and a multitude of human threats.
  5. A landscape‐scale ecosystem‐based conservation approach is recommended for Sri Lanka's terrapins with incorporation of lands with different management regimes (privately owned, municipality managed) into the protected area network. Current environmental legislation should be revised to support buffer zone delineation for aquatic habitats, wetland restoration, and landscape‐scale connectivity.
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17.
  1. The freshwater pearl mussel (Margaritifera margaritifera) is an endangered species in Europe, protected nationally and internationally, but with a steadily declining range and abundance owing to pressures such as pollution, river engineering, and illegal exploitation. Despite this, no consistent approaches have been developed around Europe for monitoring pearl mussel populations and their habitats.
  2. To address this need, experts on pearl mussel ecology from 11 countries met at a series of workshops in order to develop a protocol for monitoring, published under the auspices of the European Committee for Standardization (CEN). This standard is unique, as it is the first CEN standard dedicated to a single species of conservation concern.
  3. The standard is aimed at scientists, conservation bodies, and environmental regulators, and can be used for designing national monitoring programmes as well as reporting on the conservation status of pearl mussel populations under the European Habitats Directive. It contains guidance at the individual site level to determine why populations are failing to recruit, but also addresses the need for a wider‐scale approach to ensure that catchment developments do not have adverse impacts on rivers containing pearl mussels.
  4. A pearl mussel monitoring programme needs to investigate the size and viability of populations, as well as the fish hosts (Atlantic salmon, Salmo salar, or brown trout, Salmo trutta) on which pearl mussel larvae depend. Water quality, including variables such as dissolved oxygen, acid–base chemistry, and nutrient levels, is also an essential monitoring component, together with the physical features of the river bed, river flow regimes, and sediment dynamics.
  5. It is hoped that this pan‐European approach will improve the ability to compare data across many countries, and will ultimately ensure that the results of monitoring are translated into measures for improving the conservation status of the freshwater pearl mussel throughout its range.
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18.
  1. The increasing risk of wildfire has focused attention on the timescale of the impact and recovery of river ecosystems and methods for their bioassessment.
  2. An 18‐year pseudo time‐series was exploited to document patterns in benthic macroinvertebrate impact and recovery and evaluate the efficacy of alternative metrics to assess fire damage. Macroinvertebrates were surveyed by kick‐sampling and data were collected on river habitats. Details of river catchments and wildfire were collated as a GIS database.
  3. Macroinvertebrate richness and abundance recovered rapidly, marked by a phase of dynamic increase, followed by relative stability (0–2 years and 3–18 years, respectively). Across sites, richness and abundance were best explained by time since fire.
  4. A biotic index of general river quality was ineffective as an indicator of fire damage. While a metric of K‐selected taxa (Odonata richness) was generally indicative of fire‐affected assemblages, a contrasting metric of r‐selected taxa (percentage of chironomids, baetids, and simuliids) was not.
  5. Ordination analysis revealed time as a significant determinant of community structure across sites; however, its overall statistical importance was eclipsed by habitat characteristics (water quality, shade, altitude, and latitude) that were associated with ecological variation across both recently affected sites and the putatively recovered communities.
  6. These results highlight the stochastic processes – environmental and ecological – that frame the macroinvertebrate response to wildfire. This probabilistic context emphasizes the difficulties of developing indicator taxa for wildfire bioassessment and reinforces the importance of standardized survey protocols and the use of contrasting metrics in the assessment of wildfire impact on the ecological quality of rivers.
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19.
  1. Strategic conservation of imperilled species faces several major challenges including uncertainty in species response to management actions, budgetary constraints that limit options, and the need to scale expected conservation benefits from local to landscape levels and from single to multiple species.
  2. A structured decision‐making process was applied to address these challenges and identify a cost‐effective conservation strategy for the Federally listed endangered and threatened aquatic species in the Upper Tennessee River Basin (UTRB). The UTRB, which encompasses a landscape of ~58 000 km2, primarily in western North Carolina, eastern Tennessee, and south‐western Virginia, harbours one of the most globally diverse assemblages of freshwater fishes and mussels at temperate latitudes. To develop a strategy for conservation of 12 fish species and 24 mussel species over a 20‐year period, a management strategy that would best recover these species was identified given costs and uncertainty in management effectiveness.
  3. The main insights came from a trade‐off analysis that compared alternative allocations of effort among management actions. A strategy emphasizing population management, which included propagation and translocation, performed best across a wide range of objective weightings and was robust to uncertainty in management effectiveness. Species prioritization was based on the expected conservation benefit from the best performing strategy, degree of imperilment, and species‐specific management costs. Sub‐basin prioritization was based on expected conservation benefit from the best performing strategy and feasibility of habitat management and threat abatement.
  4. Although the strategy was developed for imperilled aquatic species in the UTRB, the structured process is applicable for developing cost‐efficient strategies to conserve multiple species across a landscape under uncertain management effectiveness. The process can assist a manager with limited resources to understand which species to work on, where to conduct that work, and what work would be most beneficial for those species in those catchments.
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20.
  1. In many intermittent streams, remnant pools persist after flow ceases and provide refuge for aquatic organisms able to tolerate stagnant water conditions. The conservation value of these pools may be greatly under‐appreciated, especially in regions with a Mediterranean climate, where perennial streams have been substantially modified or disturbed by human activities.
  2. Fish, amphibians, aquatic reptiles, and aquatic invertebrates were sampled from 15 remnant pools and three seeps at Coyote Creek, California, USA, in the late summer of 2014, during the height of the most intense drought that California has experienced in 500 years. Patterns of vertebrate and invertebrate species richness and community composition were compared with abiotic factors (e.g. water quality and habitat size).
  3. Thirteen vertebrate species and 172 invertebrate taxa were identified from remnant pools and seeps. Overall vertebrate richness and composition were not correlated with abiotic factors, but fish species richness increased with remnant pool size and depth. Invertebrate taxon richness increased with pool size. Invertebrate community composition differed by habitat type (pool versus seep) and gradients in composition were correlated with several abiotic factors (e.g. pool size, substrate, and canopy cover).
  4. Remnant pools at Coyote Creek supported a full assemblage of native fishes and numerous imperilled taxa, including California red‐legged frogs and California floater mussels. Nearly all native fishes and imperilled taxa are absent from artificially perennial and urbanized reaches of Coyote Creek just a few kilometres downstream of the study area.
  5. Remnant pools in intermittent streams should be a focus of conservation efforts in regions with a Mediterranean climate, especially during extreme droughts. Native fauna adapted to harsh intermittent flow regimes can thrive in these habitats, whereas non‐native taxa may fare poorly. Furthermore, remnant pools supported by deep groundwater sources, such as those along geological faults, may provide both ecological refuge and evolutionary refugia for freshwater biota.
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