A survey of the distribution of the PKD‐parasite Tetracapsuloides bryosalmonae (Cnidaria: Myxozoa: Malacosporea) in salmonids in Norwegian rivers – additional information gleaned from formerly collected fish

The malacosporean Tetracapsuloides bryosalmonae was detected in kidneys from Atlantic salmon parr in 64 of 91 sampled Norwegian rivers. Using real‐time PCR, this parasite was found to be present in Atlantic salmon parr in rivers along the whole coast, from the northernmost and southernmost areas of the country. In addition, T. bryosalmonae was found in kidneys from brown trout parr in 17 of 19 sampled rivers in south‐east Norway, and in Arctic charr sampled in the River Risfjordelva, located at the northernmost edge of the European mainland. In conclusion, T. bryosalmonae has a widespread distribution in salmonids in Norwegian watercourses. Proliferative kidney disease (PKD) caused by T. bryosalmonae and PKD‐induced mortality has been observed in salmonids in several Norwegian rivers and it can be speculated that more PKD outbreaks will occur as a result of climate change.     

Genetic differentiation among Atlantic salmon reared in sea‐cages reveals a non‐random distribution of genetic material from a breeding programme to commercial production

Seven samples, each consisting of approximately 50 Atlantic salmon, were collected from five marine farms in Norway. These farms reported to rear fish originating from the same commercial breed; however, all samples followed a unique route of production from breeder to marine farm via egg, fry and smolt producers. A group of farmed escapees (n=50) were also captured. Following genotyping with 18 microsatellite loci, the global F_ST was 0.083, and pair‐wise values were as high as 0.158. Four clusters, with varying degrees of genetic differentiation, were identified among samples from the farms, and the source of the escapees was identified successfully. It is suggested that the genetic differences observed among samples from the farms were created through the process of genetic drift, facilitated by parallel sub‐strains, extensive within‐strain selection and low to moderate numbers of adults contributing to batches of eggs. In conclusion, this study has demonstrated that genetic identification of escaped Atlantic salmon, back to the farm of origin, may be possible even when farms rear fish reported to originate from a single breeder.     

Incidence and timing of wild and escaped farmed Atlantic salmon (Salmo salar) in Norwegian rivers inferred from video surveillance monitoring

Run timing of escaped farmed Atlantic salmon Salmo salar vs. wild fish was compared by the use of video camera surveillance in 15 rivers over several years, covering 1600 km of the Norwegian coastline (from 58°N to 69°N). Annual runs of wild salmon varied among rivers from <200 fish to more than 10 000. During the surveillance period that for most rivers extended from late May to early October, larger‐sized salmon (fish ≥ 65 cm) generally entered the rivers earlier than small fish. The percentage of salmon identified as escaped farmed fish ranged from 0.1% to 17% across rivers with an average of 4.3%. Estimates of escapees are, however, assumed to represent minimum values because an unknown number of farmed fish passing the video cameras may have been misclassified as wild fish. By the use of a linear mixed model and generalised additive mixed models, it was found that the relationship between run timing and fish length differed significantly between farmed and wild salmon. While small‐sized farmed and wild fish (<65 cm) entered the river at about the same time, wild large salmon returned on average 1–2 weeks earlier than similarly sized escapees. The proportion of large‐sized farmed escapees also increased until late August and decreased thereafter. In contrast, there was a relatively constant and lower proportion of small‐sized escapees throughout the season. Within the surveillance period, there was no evidence of any exceptionally late runs of fish classified as escaped farmed salmon.     

Early marine survival and movements of escaped Atlantic salmon Salmo salar L. juveniles from a land‐based smolt farm during autumn

The aim of this study was to examine early marine survival and movements of simulated escaped Atlantic salmon Salmo salar L. pre‐smolt and smolt from a commercial smolt farm during autumn. One‐third of the pre‐smolt most likely died in the immediate vicinity of the release location, whereas the corresponding mortality for smolts was lower (8.5%) during the 5‐week study period. The surviving pre‐smolt left the farm area after 2–3 days, predominantly along the shore. In contrast, most of the surviving smolts left the farm area during the first day and 54% seemed to move away from the shore and adopt a more pelagic movement pattern than pre‐smolt. The number of surviving fish recorded in the fjord decreased throughout the study period, possibly due to a combination of fish migrating out of the fjord or undetected mortality. Compared with existing knowledge on migration of released farmed smolts during spring, our results indicate less directional and slower movement rates during autumn. Only two of the tagged fish were detected upstream in the rivers following release. A rapid dispersion of escapees indicates that the potential for recapturing escapees is limited unless recapture efforts are initiated immediately after escape. Hence, there is a need for development of technology that detects and prevents escapees to enter the sea.     

Deep habitats are important for juvenile Atlantic salmon Salmo salar L. in large rivers

Linnansaari T, Keskinen A, Romakkaniemi A, Erkinaro J, Orell P. Deep habitats are important for juvenile Atlantic salmon Salmo salar L. in large rivers. Ecology of Freshwater Fish 2010: 19: 618–626. © 2010 John Wiley & Sons A/S Abstract – Juvenile Atlantic salmon were studied by underwater video surveillance and self contained underwater breathing apparatus‐diving in deep (i.e. >1.0 m), fast flowing areas of two large river systems (River Teno, River Tornionjoki) in northern Finland. Both video and diving data indicated that young‐of‐the‐year (YOY) salmon (0+) and salmon parr (>0+) readily utilised habitats deeper than 1 m. Young‐of‐the‐year salmon and parr were observed through a range of 0.5–1.9 m and 0.4–2.2 m, respectively. A negative linear relationship between the mean abundance of YOY salmon and mean depth was noted from the diving transects. Salmon parr were similarly abundant throughout the range of depths studied. Video data showed that deep habitats were used throughout the summer (June–August). It was concluded that deep, fast‐flowing areas in large rivers may constitute a significant habitat resource for juvenile salmon that has not been traditionally accounted for when estimating salmon production.     

Population decline in the endemic Atlantic salmon (Salmo salar) in Kapisillit River,Greenland

Atlantic salmon, Salmo salar L., is found throughout the North Atlantic, with thousands of rivers having spawning populations. In Greenland, spawning is limited to one river in West Greenland, the Kapisillit River (64?N), and the salmon are limited to the lower few kilometres of the system. Using mark–recapture, it was estimated the parr population was 5,953 individuals, and that the population size has declined by 52% since 1959. In spite of this decline, parr density remains high, being between 0.26 and 0.62 parr/m². Using a historical age‐length key, an estimated minimum of 635 smolt will have descended to the sea in 2017. These will be caught in a fishery currently subject to no regulatory measures and fishing remains the most likely driver of the population decline. The genetically distinct population is endemic to Greenland, and managers should implement measures to conserve this genetic integrity and local biodiversity.     

Piscine reovirus (PRV) in wild Atlantic salmon,Salmo salar L., and sea‐trout,Salmo trutta L., in Norway

This is the first comprehensive study on the occurrence and distribution of piscine reovirus (PRV) in Atlantic salmon, Salmo salar L., caught in Norwegian rivers. PRV is a newly discovered reovirus associated with heart and skeletal muscle inflammation (HSMI), a serious and commercially important disease affecting farmed Atlantic salmon in Norway. A cross‐sectional survey based on real‐time RT‐PCR screening of head kidney samples from wild, cultivated and escaped farmed Atlantic salmon caught from 2007 to 2009 in Norwegian rivers has been conducted. In addition, anadromous trout (sea‐trout), Salmo trutta L., caught from 2007 to 2010, and anadromous Arctic char, Salvelinus alpinus (L.), caught from 2007 to 2009, were tested. PRV was detected in Atlantic salmon from all counties included in the study and in 31 of 36 examined rivers. PRV was also detected in sea‐trout but not in anadromous Arctic char. In this study, the mean proportion of PRV positives was 13.4% in wild Atlantic salmon, 24.0% in salmon released for stock enhancement purposes and 55.2% in escaped farmed salmon. Histopathological examination of hearts from 21 PRV‐positive wild and one cultivated salmon (Ct values ranging from 17.0 to 39.8) revealed no HSMI‐related lesions. Thus, it seems that PRV is widespread in Atlantic salmon returning to Norwegian rivers, and that the virus can be present in high titres without causing lesions traditionally associated with HSMI.     

Increased abundance of European eel (Anguilla anguilla) in acidified Norwegian rivers after liming

The prevalence and abundance (density 100 m^?2) of European eel (Anguilla anguilla) were studied by means of electrofishing in 13 acidified rivers in Norway that had been limed to restore acceptable water quality for Atlantic salmon (Salmo salar). Status of Atlantic salmon in these rivers varied prior to liming, from being entirely lost in six highly acidified rivers and in different stages of decline in seven less acidified rivers. Four of the rivers are heavily affected by hydropower development. The abundance and prevalence of European eel increased significantly during the study period. The best model for predicting eel abundance was that with four explanatory variables: time after liming, time after liming squared, status of salmon stocks and hydropower regulation. The eel density was expected to increase by a factor of almost 5 after 10 years of liming. The model also predicts that a river with a formerly reduced Atlantic salmon stock has a 2.8 times higher density of eel than rivers with formerly lost salmon stocks. Before liming, European eel were on average recorded at 15 and 41% of the sampling stations in rivers with formerly lost and reduced Atlantic salmon populations, respectively, increasing to 49 and 68% in individual rivers, respectively, after 10 years of liming. The recovery of European eel in these formerly acidified rivers by means of liming took place during the same period as their abundance declined in other parts of their distribution area in Norway and elsewhere in Europe.     

Influence of long term ammonia exposure on Atlantic salmon (Salmo salar L.) parr growth and welfare

The objective of this study was to determine the long‐term effects of ambient unionized ammonia nitrogen (NH₃‐N) combined with different feeding regimes on Atlantic salmon Salmo salar L parr growth, welfare and smoltification. Previous studies on the parr stage of Atlantic salmon have mostly focused on acute exposure, or at low temperatures. Atlantic salmon parr were exposed for 105 days (at 12°C, pH 6.8) to four sublethal ammonia concentrations ranging from 0.1 to 35 μg L^?1 NH₃‐N (0.1–25 mg L^?1 TAN) at two feeding levels: full feed strength (+20% overfeeding) and 1/3 of full feed strength. After 21 days, it was observed that 32 μg L^?1 NH₃‐N reduced growth rate of parr fed full ration, but this effect was not evident at the end of the exposure. Feed utilization was not affected by ammonia exposure at any sampling point. Increasing ammonia levels were associated with a higher prevalence and severity of gill damage at 22 days but not at the end of the exposure. The examination of welfare indicators revealed only a few pathologies, not related to ammonia exposure. In addition, higher ammonia concentrations did not appear to influence the development of hypo‐osmoregulatory ability during parr‐smolt transformation.     

The prevalence of escaped farmed salmon, Salmo salar L., in the River Ewe, western Scotland, with notes on their ages, weights and spawning distribution

Abstract  The prevalence of escaped farmed Atlantic salmon, Salmo salar L., in the River Ewe, western Scotland, was assessed. After the establishment of smolt cages in the catchment and marine cages near the river mouth during 1986–1987, approximately 425 000 parr and smolts, and 122 000 growers have escaped. Between 1987 and 2001, farmed salmon occurred in the rod fishery in 13 of the 15 years, contributing at least 5.8% of the total catch, with a maximum annual frequency of 27.1%. It was estimated that <1% of fish escaping from the marine cages entered the river, but contributed at least 27% of potential anadromous spawners in 1997. Radiotagged, farmed fish in 2001 probably spawned in three subcatchments also used by tagged wild fish. Despite the likelihood of hybridisation there was no change in the median weight or marine age of wild fish, but smolt age decreased significantly ( P  < 0.02). The Ewe has a depleted wild salmon population (≤900 anadromous adults), and further genetic introgression by escapees should be prevented.     

Geographic variation in host fish use and larval metamorphosis for the endangered dwarf wedgemussel

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Main stem movement of Atlantic salmon parr in response to high river temperature

Atlantic salmon become thermally stressed when water temperatures exceed 23 °C. To alleviate this stress, they behaviourally thermoregulate by moving to patches of cold water, often forming large aggregations. These patches are known as thermal refuges. Given the consensus that climate change will increase temperatures in Atlantic salmon catchments, thermal refuges will become increasingly important in minimising summer mortalities. While the behaviour of salmonids within thermal refuges is fairly well understood, less is known about their main stem movement in search of thermal refuges or its thermal and temporal cues. We detail the results of a PIT telemetry study to investigate the main stem movement behaviour of thermally stressed Atlantic salmon parr in a temperature‐impacted river. PIT antennas placed around two thermal refuges and at the upstream and downstream limits of their surrounding reach were used to record the movement of salmonids during a heatwave. We observed parr movement at the upstream and downstream antennas 135 min prior to the occurrence of the midpoint of aggregations in the thermal refuges, indicating that Atlantic salmon parr make reach‐scale movements in search of cool water prior to aggregating. Logistic regression showed that the number of degree hours >28 °C predicted the occurrence of main stem movement with a good degree of accuracy, indicating that this temperature represents a fundamental threshold causing Atlantic salmon parr to move towards cool water. Such data could be instrumental in allowing river managers to place limits on human activity within rivers, allowing salmon populations time to recover following heat stress events.     

Morphological variability of Atlantic salmon Salmo salar and brown trout Salmo trutta in different river environments

Abstract – The morphologies of sympatric juvenile Atlantic salmon Salmo salar parr and brown trout Salmo trutta parr were compared between Irish rivers with contrasting hydraulic environments – a high‐gradient and a low‐gradient tributary from the River Barrow catchment, south‐east Ireland and a high‐gradient river from the Burrishoole catchment, west of Ireland. The two catchments differ markedly in mean annual precipitation (849.0 mm year^?1 and 1370.3 mm year^?1 for the Barrow and Burrishoole catchments, respectively). Parr of both species demonstrated morphological variation between and within catchments. Changes in metrics such as pectoral fin length, body depth and body length between and within catchments suggest that hydraulic forces were a major determinant of morphological variation. Both species from the Burrishoole catchment had relatively larger pectoral fins, longer heads, larger eyes and shallower bodies than conspecifics from the Barrow catchment. In rivers subject to frequent rainfall‐driven high discharges, such as those in the Burrishoole catchment, a more fusiform body and head shape coupled with larger pectoral fins may reduce the energetic cost of maintaining position in the water column, as well as increase stability and manoeuvrability. The larger eyes in both parr species in the Burrishoole catchment could further be a response to the lower visibility of the more turbid and peat‐stained waters or to the reduced prey availability. The results of this study demonstrate that local adaptation to flow conditions can yield morphologically distinct populations and that multiple species can exhibit parallel phenotypic responses to changing environmental conditions.     

Recovery and re-establishment of Atlantic salmon, Salmo salar, in limed Norwegian rivers

A total of 21 acidified Norwegian rivers are now being limed to re‐establish or restore Atlantic salmon, Salmo salar L., stocks. Natural reproduction of Atlantic salmon was evident 1 year after the first year of liming in all rivers that had lost their native stocks (n = 9) except for one river. The density of fry (age 0+) developed significantly more rapidly in rivers that supported remnant stocks than in rivers that had lost their stocks, based on data 5 years after treatment. Nine of the study rivers were supplied with hatchery‐reared salmon, mainly unfed fry. Of the rivers with lost stocks, those which were supplied with fish had significantly higher densities than those that were not enhanced. On the other hand, rivers with remnant stocks that were supplied with fish had significantly lower densities of salmon fry than those that did not undergo such mitigation measures. In 2001, all limed rivers yielded 41.9 t of salmon.     

Influence of environmental and biological factors on the overwinter growth rate of Atlantic salmon Salmo salar parr in a UK chalk stream

Smolt lengths are increasingly recognised as an important determinant of salmonid marine survival rates. Overwintering growth rates could thus strongly influence adult return rates. In Atlantic salmon Salmo salar, most overwintering studies focus on rivers in harsh climates with minimal growth, yet in more southerly rivers, overwintering growth rates can be relatively high. Here, the factors influencing annual overwinter growth rates were tested for juvenile S. salar in a temperate chalk stream in southern England over 13 years, where over 10,000 salmon parr were tagged annually in autumn and a proportion recaptured the following spring during smolt emigration. Winters of higher and more variable water temperatures, with longer periods of high flows, showed increased overwintering growth rates. Faster growth rates were recorded from sites further upstream and that had lower parr densities; smaller individuals also grew more than expected for their initial size. These results suggest that a range of factors influences overwintering salmonid growth rates and can be used to inform management decisions to maximise the quality of emigrating smolts.     

Potential disease interaction reinforced: double-virus-infected escaped farmed Atlantic salmon,Salmo salar L., recaptured in a nearby river

The role of escaped farmed salmon in spreading infectious agents from aquaculture to wild salmonid populations is largely unknown. This is a case study of potential disease interaction between escaped farmed and wild fish populations. In summer 2012, significant numbers of farmed Atlantic salmon were captured in the Hardangerfjord and in a local river. Genetic analyses of 59 of the escaped salmon and samples collected from six local salmon farms pointed out the most likely source farm, but two other farms had an overlapping genetic profile. The escapees were also analysed for three viruses that are prevalent in fish farming in Norway. Almost all the escaped salmon were infected with salmon alphavirus (SAV) and piscine reovirus (PRV). To use the infection profile to assist genetic methods in identifying the likely farm of origin, samples from the farms were also tested for these viruses. However, in the current case, all the three farms had an infection profile that was similar to that of the escapees. We have shown that double-virus-infected escaped salmon ascend a river close to the likely source farms, reinforcing the potential for spread of viruses to wild salmonids.     

Reproductive success of Atlantic salmon (Salmo salar) mature male parr in a small river,the Nivelle: influence of shelters

Grimardias D, Merchermek N, Manicki A, Garnier J, Gaudin P, Jarry M, Beall E. Reproductive success of Atlantic salmon (Salmo salar) mature male parr in a small river, the Nivelle: influence of shelters.
Ecology of Freshwater Fish 2010: 19: 510–519. © 2010 John Wiley & Sons A/S Abstract – The breeding activity of a small population of Atlantic salmon (Salmo salar L.) was monitored on the Nivelle River in southwest France to estimate the overall contribution of mature male parr and the numbers involved in egg fertilisation. In the twelve redds sampled, 563 eggs were collected for parental assignment and the physical habitat was characterised to investigate the possible relationship between parr reproductive success and habitat complexity. The overall contribution of mature male parr was particularly high (87%, one of the highest estimates ever reported). Concerning habitat complexity, granulometry and shelter diversity were correlated with the number of parr breeders contributing to egg fertilisation in each redd. A complex habitat increased multiple paternity, which could affect the effective size and genetic variability of small salmon populations.     

Wild origin and enriched environment promote foraging rate and learning to forage on natural prey of captive reared Atlantic salmon parr

Abstract – After release to the wild, captive reared salmon have shown lower foraging rates on natural prey and impaired ability to avoid natural predators and thus lower survival compared with wild‐born conspecifics. Here, we examine whether captive breeding influences learning of foraging on natural prey and how enriched rearing methods may improve foraging on natural prey by Atlantic salmon (Salmo salar) parr. We reared offspring of hatchery or wild salmon of the same population in either a standard or enriched environment at production‐scale densities. The enriched environment featured submerged overhead shelter, varying water current, depth and direction and consequently alterations in food dispersion. Parr reared in the enriched environment expressed higher feeding rates, and parr of wild origin started to forage earlier on natural prey. The enriched method promoted foraging of hatchery reared parr on natural prey and is easily applicable to commercial production of salmonids for reintroduction or stock enhancement purposes.     

Are hybrids between Atlantic salmon and brown trout suitable long‐term hosts of Gyrodactylus salaris during winter?

The monogenean parasite Gyrodactylus salaris poses serious threats to many Atlantic salmon populations and presents many conservation and management questions/foci and challenges. It is therefore critical to identify potential vectors for infection. To test whether hybrids of native Atlantic salmon (Salmo salar) × brown trout (Salmo trutta) are suitable as reservoir hosts for G. salaris during winter, infected hybrid parr were released into a natural subarctic brook in the autumn. Six months later, 23.9% of the pit‐tagged fish were recaptured. During the experimental period, the hybrids had a sixfold increase in mean intensity of G. salaris, while the prevalence decreased from 81% to 35%. There was high interindividual hybrid variability in susceptibility to infections. The maximum infrapopulation growth rate (0.018 day^?1) of G. salaris throughout the winter was comparable to earlier laboratory experiments at similar temperatures. The results confirm that infrapopulations of G. salaris may reproduce on a hybrid population for several generations at low water temperatures (~1 °C). Wild salmon–trout hybrids are undoubtedly susceptible to G. salaris and represent an important reservoir host for the parasite independent of other co‐occurring susceptible hosts. Consequently, these hybrids may pose a serious risk for G. salaris transmission to nearby, uninfected rivers by migratory individuals.