Pyrosequencing Reveals Significant Changes in Microbial Communities Along the Ecological Succession of Biological Soil Crusts in the Tengger Desert of China

Biological soil crusts (BSCs) have important ecological functions in arid and semiarid lands, but they remain poorly understood in terms of the changes in microbial communities during BSC succession under in situ field conditions. Here, 454 pyrosequencing was used to assess the microbial community composition of four BSC types in the Tengger Desert of China: alga, lichen (cyanolichen and green alga-lichen), and moss crusts, representing early, middle, and final successional stages of BSCs, respectively. The results showed the highest diversity of microbial communities inhabiting lichen crusts, whereas the lowest diversity was observed in moss crusts. Five phyla, Proteobacteria, Actinobacteria, Cyanobacteria, Bacteroidetes, and Acidobacteria, accounted for about 72% to 87% of total prokaryotic sequences in different BSCs. The most abundant eukaryotic microorganism was Ascomycota, accounting for 47% to 93% of the total eukaryotic sequences. Along the succession of BSCs, the abundance of photoautotrophic Cyanobacteria, Chlorophyta, and Bacillariophyta declined, and that of heterotrophic microorganisms such as bacteria and fungi increased. Statistical analysis showed clear divergency of microbial taxa at the class level among the different successional stages of BSCs. The clustering results at class level showed that the moss crusts were the farthest from the rest in prokaryotic composition; the alga crusts were the most different in terms of eukaryotic microorganisms and the two kinds of lichen crusts were relatively closer in both compositions. Ordination analysis showed that the main variations of community structure among BSCs could be explained best by the abundance of Cyanobacteria and Ascomycota and by physiochemical properties of BSCs, including mechanical composition, moisture, and electrical conductivity. In conclusion, our results indicate that Cyanobacteria and Ascomycota likely play an important role in the evolution of BSC structure and functions and highlight the importance of environmental factors in shaping microbial community structures of BSCs in the Tengger Desert of China.     

黄土高原半干旱地区撂荒地次生植被演替过程中土壤微生物活性研究

To show the vegetation succession interaction with soil properties, microbial biomass, basal respiration, and enzyme activities in different soil layers (0--60 cm) were determined in six lands, i.e., 2-, 7-, 11-, 20-, 43-year-old abandoned lands and one native grassland, in a semiarid hilly area of the Loess Plateau. The results indicated that the successional time and soil depths affected soil microbiological parameters significantly. In 20-cm soil layer, microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), MBC/MBN, MBC to soil organic carbon ratio (MBC/SOC), and soil basal respiration tended to increase with successional stages but decrease with soil depths. In contrast, metabolic quotient (qCO2) tended to decrease with successional stages but increase with soil depths. In addition, the activities of urease, catalase, neutral phosphatase, β-fructofuranosidase, and carboxymethyl cellulose (CMC) enzyme increased with successional stages and soil depths. They were significantly positively correlated with microbial biomass and SOC (P < 0.05), whereas no obvious trend was observed for the polyphenoloxidase activity. The results indicated that natural vegetation succession could improve soil quality and promote ecosystem restoration, but it needed a long time under local climate conditions.     

Microalgal species variation at different successional stages in biological soil crusts of the Gurbantunggut Desert,Northwestern China

Biological soil crusts (BSC), most notably lichen crusts, develop and diversify in the Gurbantunggut Desert, the largest fixed and semi-fixed desert in China. Four different successional stages of BSC, including bare sand, microalgal crusts, lichen crusts, and moss crusts, were selected to determine successional changes in microalgal species composition and biomass and formation of BSC. A 10 × 10-m observation plot was established in an interdune region of the Gurbantunggut Desert and data were collected over an 8-year study period. The main results were: (1) different successional stages of BSC significantly affected the content of soil organic C and total and available N but not the total and available P and K content of soil; (2) composition of microalgal communities differed among the four successional stages; (3) significant differences in microalgal biomass were observed among the four successional stages; (4) bare sand was mainly uncompacted sand gains; (5) filamentous cyanobacteria, particularly Microcoleus vaginatus, were the dominant species in the early phase of crust succession. The presence of fungal mycelium and moss rhizoids prevented water and wind erosion.     

Arylsulfatase activity of soil microbial biomass along a Mediterranean-arid transect

The relationships between arylsulfatase and microbial activity were investigated in regional and microenvironmental scales, at three study sites in Israel, that represent different climatic regions—Mediterranean (sub-humid), mildly arid and arid.Total arylsulfatase activity was divided into extracellular and intracellular (microbial biomass enzyme) activities according to the chloroform-fumigation method. The results show that with increasing aridity, C_org (soil organic carbon), C_mic (soil microbial biomass carbon), N_mic (soil microbial biomass nitrogen) and respiration rate decreased, while C_mic/C_org and metabolic quotient (qCO₂) increased. Total, extracellular and microbial biomass arylsulfatase activities decreased with aridity. Expressed as percentage of total activity, the arylsulfatase activity of microbial biomass in the soil, at 0-2 cm and 5-10 cm depths, accounted for more than 50% of the total, in most measurements. This activity was significantly higher in the arid sites than that found in the Mediterranean one for the 0-2 cm soil. The results indicate the importance of the microflora as an enzyme source in soils, especially in arid climate conditions.Enzyme activity in the different study sites was found to be influenced by microenvironmental conditions. The Mediterranean site showed a much higher enzyme activity under shrubs than that under rock fragments and in bare soil. In the arid site rock fragments created a favorable microenvironment for microbial activity on soil surface, which resulted in a much higher microbial biomass and arylsulfatase activity than that in bare soil.The total, extracellular and intracellular arylsulfatase activities, were significantly correlated with C_org, C_mic, N_mic and respiration rate (p<0.05) at all study sites. The correlation coefficients between microbial biomass and arylsulfatase activity were usually higher than those between organic carbon and enzyme activity, especially in the arid sites. Close relationships between microbial biomass and arylsulfatase activities in all the studied sites supported the hypothesis that C_org content and enzyme activities should be related to each other via microbial biomass. Arylsulfatase activity was found to be a good indicator of microbial one. The regression equations between these factors can be incorporated into models of biogeochemical cycling for their easy method of analysis.     

Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties

The response of soil microbial communities following changes in land-use is governed by multiple factors. The objectives of this study were to investigate (i) whether soil microbial communities track the changes in aboveground vegetation during succession; and (ii) whether microbial communities return to their native state over time. Two successional gradients with different vegetation were studied at the W. K. Kellogg Biological Station, Michigan. The first gradient comprised a conventionally tilled cropland (CT), mid-succession forest (SF) abandoned from cultivation prior to 1951, and native deciduous forest (DF). The second gradient comprised the CT cropland, early-succession grassland (ES) restored in 1989, and long-term mowed grassland (MG). With succession, the total microbial PLFAs and soil microbial biomass C consistently increased in both gradients. While bacterial rRNA gene diversity remained unchanged, the abundance and composition of many bacterial phyla changed significantly. Moreover, microbial communities in the relatively pristine DF and MG soils were very similar despite major differences in soil properties and vegetation. After >50 years of succession, and despite different vegetation, microbial communities in SF were more similar to those in mature DF than in CT. In contrast, even after 17 years of succession, microbial communities in ES were more similar to CT than endpoint MG despite very different vegetation between CT and ES. This result suggested a lasting impact of cultivation history on the soil microbial community. With conversion of deciduous to conifer forest (CF), there was a significant change in multiple soil properties that correlated with changes in microbial biomass, rRNA gene diversity and community composition. In conclusion, history of land-use was a stronger determinant of the composition of microbial communities than vegetation and soil properties. Further, microbial communities in disturbed soils apparently return to their native state with time.     

Phospholipid fatty acid profiles as indicators for the microbial community structure in soils along a climatic transect in the Judean Desert

 Analyses of phospholipid fatty acids (PLFAs) were used to assess variations in soil microbial biodiversity, community structure and biomass, and consequently, the soil microbial successions in time along the climate gradient of the Judean Desert. Principal component analysis of the PLFA data revealed that the degree of time- and space-related variations in PLFA composition and microbial community structure was high among the desert habitats. Significant shifts of specific groups of fatty acids caused by climatic variations were observed. The biomass represented by the total amounts of PLFAs indicated that the greater the average amount of precipitation, the higher the biomass. The results indicate that at least three different microorganism strategies were probably followed: (1) in soils with a high biomass during the rainy period, a significant biomass decrease occurred during the dry period, mainly due to an extraordinary decrease of Gram-negative bacteria as indicated by the decrease of typical monounsaturated fatty acids and hydroxy-substituted phospholipid fatty acids in semi-arid climates; (2) in soils with low biomass content during the rainy period, a significant increase of biomass during the dry period occurred, due mainly to the increase of eukaryotes, Gram-positive, and Gram-negative bacteria characterized by polyunsaturated, branched chain and some of the monounsaturated fatty acids, respectively; and (3) relatively low and constant biomass during the entire observation period in the more arid zones of the Judean Desert. Received: 12 January 1998     

The impact of climate change on geomorphology and desertification along a mediterranean-arid transect

From the perspective of geomorphology, three important aspects of climate should be considered if conditions become more arid: (a) any decrease that might occur in the annual rainfall amount; (b) the duration of rainfall events; and (c) any increase in the intervals between rainfall events. These, together with increasing temperature, lead to less available water, less biomass and soil organic matter content and hence to a decrease in aggregate size and stability. As a consequence, the soil permeability decreases, soils develop surface crusts and infiltration rates decrease dramatically. Such changes in vegetation cover and soil structure lead to an increase in overland flow and in the erosion of the fertile topsoil layer. Positive feedback mechanisms may reinforce these effects and lead to desertification. This paper considers the results of field investigations into the spatial variability of a number of ‘quick response’ variables at two scales: the regional and the plot scales. Concerning the regional scale spatial variability, results of experimental field work conducted along a climatic transect, from the Mediterranean climate to the arid zone in Israel, show that: (1) organic matter content, and aggregate size and stability decrease with aridity, while the sodium adsorption ratio and the runoff coefficient increase; and (2) the rate of change of these variables along the climatic transect is non-linear. A steplike threshold exists at the semiarid area, which sharply separates the Mediterranean climate and arid ecogeomorphic systems. This means that only a relatively small climatic change would be needed to shift the borders between these two systems. As many regions of Mediterranean climate lie adjacent to semiarid areas, they are threatened by desertification in the event of climate change. Concerning spatial variability at the plot scale, different patterns of overland flow generation and continuity characterize hillslopes under different climatic conditions. While in the Mediterranean climate area infiltration is the dominant process all over the hillslope, in the arid area overland flow predominates. In contrast to the uniform distribution of processes in these two zones, a mosaic-like pattern, consisting of locally ‘arid’ water contributing and ‘moist’ water accepting patches is typical of the transitional semiarid area. Such pattern is strengthened by fires or grazing which are characteristic of this area. The development of such mosaic pattern enables most rainfall to be retained on hillslopes. Changes in the spatial pattern of contributing versus accepting water areas can be used as an indicator of desertification and applied to developing rehabilitation strategies. © 1998 John Wiley & Sons, Ltd.     

Responses of soil microarthropods to warming and increased precipitation in a semiarid temperate steppe

Soil microarthropods are an important component in soil food webs and their responses to climate change could have profound impacts on ecosystem functions. As part of a long-term manipulative experiment, with increased temperature and precipitation in a semiarid temperate steppe in the Mongolian Plateau which started in 2005, this study was conducted to examine effects of climate change on the abundance of soil microarthropods. Experimental warming had slightly negative but insignificant effects on the abundance of mites (−14.6%) and Collembola (−11.7%). Increased precipitation greatly enhanced the abundance of mites and Collembola by 117 and 45.3%, respectively. The response direction and magnitude of mites to warming and increased precipitation varied with suborder, leading to shifts in community structure. The positive relationships of mite abundance with plant cover, plant species richness, and soil microbial biomass nitrogen suggest that the responses of soil microarthropods to climate change are largely regulated by food resource availability. The findings of positive dependence of soil respiration upon mite abundance indicate that the potential contribution of soil fauna to soil CO₂ efflux should be considered when assessing carbon cycling of semiarid grassland ecosystems under climate change scenarios.     

Shifts in rhizosphere microbial communities and enzyme activity of Poa alpina across an alpine chronosequence

This study quantifies the influence of Poa alpina on the soil microbial community in primary succession of alpine ecosystems, and whether these effects are controlled by the successional stage. Four successional sites representative of four stages of grassland development (initial, 4 years (non-vegetated); pioneer, 20 years; transition, 75 years; mature, 9500 years old) on the Rotmoos glacier foreland, Austria, were sampled. The size, composition and activity of the microbial community in the rhizosphere and bulk soil were characterized using the chloroform-fumigation extraction procedure, phospholipid fatty acid (PLFA) analysis and measurements of the enzymes β-glucosidase, β-xylosidase, N-acetyl-β-glucosaminidase, leucine aminopeptidase, acid phosphatase and sulfatase. The interplay between the host plant and the successional stage was quantified using principal component (PCA) and multidimensional scaling analyses. Correlation analyses were applied to evaluate the relationship between soil factors (C_org, N_t, C/N ratio, pH, ammonium, phosphorus, potassium) and microbial properties in the bulk soil. In the pioneer stage microbial colonization of the rhizosphere of P. alpina was dependent on the reservoir of microbial species in the bulk soil. As a consequence, the rhizosphere and bulk soil were similar in microbial biomass (ninhydrin-reactive nitrogen (NHR-N)), community composition (PLFA), and enzyme activity. In the transition and mature grassland stage, more benign soil conditions stimulated microbial growth (NHR-N, total amount of PLFA, bacterial PLFA, Gram-positive bacteria, Gram-negative bacteria), and microbial diversity (Shannon index H) in the rhizosphere either directly or indirectly through enhanced carbon allocation. In the same period, the rhizosphere microflora shifted from a G⁻ to a more G⁺, and from a fungal to a more bacteria-dominated community. Rhizosphere β-xylosidase, N-acetyl-β-glucosaminidase, and sulfatase activity peaked in the mature grassland soil, whereas rhizosphere leucine aminopeptidase, β-glucosidase, and phosphatase activity were highest in the transition stage, probably because of enhanced carbon and nutrient allocation into the rhizosphere due to better growth conditions. Soil organic matter appeared to be the most important driver of microbial colonization in the bulk soil. The decrease in soil pH and soil C/N ratio mediated the shifts in the soil microbial community composition (bacPLFA, bacPLFA/fungPLFA, G⁻, G⁺/G⁻). The activities of β-glucosidase, β-xylosidase and phosphatase were related to soil ammonium and phosphorus, indicating that higher decomposition rates enhanced the nutrient availability in the bulk soil. We conclude that the major determinants of the microflora vary along the successional gradient: in the pioneer stage the rhizosphere microflora was primarily determined by the harsh soil environment; under more favourable environmental conditions, however, the host plant selected for a specific microbial community that was related to the dynamic interplay between soil properties and carbon supply.     

Structural diversity and enzyme activity of volcanic soils at different stages of development and response to experimental disturbance

We investigated the phospholipid fatty acid (PLFA) diversity and enzyme activities in soils from the volcano, Mt. Etna (Sicily). The soils were at sites which have been developing for different periods of time and have formed in volcanic lava of differing ages that have been supplemented with volcanic ejecta from subsequent eruptions. However, the plant communities indicated a marked successional difference between the sites and we have used this as a proxy for developmental stage. We have compared the structural and functional properties of the microbial communities in soils from the two sites and tested experimentally the hypothesis that the more diverse community was more resistant and resilient to disturbance. The experimental disturbance imposed was heating (60 °C for 48 h) and the recovery of enzyme activities (β-glucosidase, acid phosphatase and arylsulfatase) and structural properties (PLFA profiles) were then followed over six months. The microbial community in the soil from the older site was more structurally diverse and had a larger total PLFA concentration before disturbance than that of the soil from the younger site. The older soil community was not more resistant and resilient following an environmental disturbance as the younger soil community was equally or more resistant and resilient for all parameters. Changes in enzyme activities following disturbance were almost entirely attributable to changes in biomass (total PLFA).     

Microbial communities in forest floors under four tree species in coastal British Columbia

We compare forest floor microbial communities in pure plots of four tree species (Thuja plicata, Tsuga heterophylla, Pseudotsuga menziesii, and Picea sitchensis) replicated at three sites on Vancouver Island. Microbial communities were characterised through community level physiological profiles (CLPP), and profiling of phospholipid fatty acids (PLFA).Microbial communities from cedar forest floors had higher potential C utilisation than the other species. The F layer of the forest floor under cedar contained significantly higher bacterial biomass (PLFA) than the F layer under the other three tree species. There were differences in microbial communities among the three sites: Upper Klanawa had the highest bacterial biomass and potential C utilisation; this site also had the highest N availability in the forest floors. Forest floor H layers under hemlock and Douglas-fir contained greater biomass of Gram positive, Gram negative bacteria and actinomycetes than F layers based on PLFA, and H layers under spruce contained greater biomass of Gram negative bacteria than F layers. There were no significant differences in bacterial biomass between forest floor layers under cedar. Fungal biomass displayed opposite trends to bacteria and actinomycetes, being lowest in cedar forest floors, and highest in the F layer and at the site with lowest N availability. There were also differences in community composition among species and sites, with cedar forest floors having a much lower fungal:bacterial ratio than spruce, hemlock and Douglas-fir. The least fertile Sarita Lake site had a much greater fungal:bacterial ratio than the more fertile San Juan and Upper Klanawa sites. Forest floor layer had the greatest effect on microbial community structure and potential function, followed by site, and tree species. The similarity in trends among measures of N availability and microbial communities is further evidence that these techniques provide information on microbial communities that is relevant to N cycling processes in the forest floor.     

Enzyme activities along a climatic transect in the Judean Desert

Soil enzymes have an important influence on nutrient cycling. We examined spatial and temporal patterns in dehydrogenase, arylsulfatase, alkaline and acid phosphatase activities, and their relationships with organic carbon and microbial biomass nitrogen at three sites in Israel representing different climatic regions: Mediterranean (humid), mildly arid and arid. The sites were selected along a climatic transect from the Judean Mountains in the west to the Dead Sea in the east of Israel. With increasing aridity, soil organic carbon, soil microbial biomass nitrogen, dehydrogenase, phosphatase and different pools of arylsulfatase activities decreased significantly. A sharp change in enzyme activities existed between 260- and 120-mm mean annual rainfall. The arylsulfatase activity of the microbial biomass in the 0–2- and 5–10-cm soil layers usually accounted for more than 50% of the total activity, and the fraction of total activity in the 0–2-cm soil layer of the arid sites was significantly greater than that of the humid site. Dehydrogenase and total and microbial biomass arylsulfatase activities were sensitive indicators of the climatic change along the transect. At the humid and mildly arid sites, the activities of dehydrogenase were less in the winter than in the summer and spring, whereas total and microbial biomass arylsulfatase activities were less in both summer and winter. At the arid site, lower values were observed in the summer at 0–2-cm soil depth. At all sites, lower alkaline phosphatase activities at 0–2 cm were observed in the summer, but there were no significant seasonal differences in acid phosphatase activities. These different seasonal patterns of enzyme activities are attributed to the enzyme source, and specific seasonal soil moisture and temperature conditions at the studied sites. The low dehydrogenase and microbial biomass arylsulfatase activities in the winter at the humid and mildly arid sites are explained by the cold and wet soil conditions, and the low enzyme activity in the summer at the arid site is attributed to the dry and hot soil conditions.     

Sensitivities to nitrogen and water addition vary among microbial groups within soil aggregates in a semiarid grassland

We investigated whether enhanced nitrogen (N) and water inputs would redistribute the microbial community within different soil aggregate size classes in a field manipulation experiment initiated in 2005. Distribution of microbial groups was monitored in large macroaggregates (>2000 μm), small macroaggregates (250–2000 μm), and microaggregates (<250 μm) in a semiarid grassland. Both arbuscular mycorrhizal (AM) fungi and saprophytic fungi were the most abundant in soil macroaggregates. The gram-negative bacteria were more abundant in soil microaggregates. Total phospholipid fatty acid (PLFA) concentration in general and actinomycetes in particular decreased with N addition under ambient precipitation but was unaffected by combined additions of N and water within the three soil aggregate fractions as compared to control plots. In contrast, the abundance of saprophytic fungi decreased with combined N and water addition, but it was not affected by N addition under ambient precipitation. The abundance of gram-positive bacteria increased with N addition under both ambient and elevated water conditions for all soil aggregate fractions. In summary, the higher short-term nutrient and water availabilities provoked a shift in soil microbial community composition and increased total PLFA abundance irrespectively of the level of soil aggregation. In the long term, this could destabilize soil carbon pools and influence the nutrient limitation of soil biota within different soil aggregate size classes under future global change scenarios.     

PLFA法和DGGE法分析堆肥细菌群落变化

同时采用PLFA（Phospholipid fatty acid）谱图分析法和DGGE（Denaturing gradient gel electrophoresis）法分析农业废物堆肥化过程中细菌群落的变化。结果表明：（1）单体PLFA数据显示样品之间的群落结构有明显差异,随着堆肥进程的进行,群落在不断演替,PLFA数据可以较为明确地表征微生物生物量的变化,但不能给出具体的物种变化信息;（2）DGGE分析显示堆肥过程中的样点和DGGE条带数据都存在3大主要类别,堆肥过程中细菌群落结构至少经历了3个阶段的演替,即嗜温细菌群落、高温细菌群落和腐熟期细菌群落。堆肥过程是微生物群落结构与堆肥温度相互制约的过程;（3）虽然两类方法显示的信息并不完全一致,但也因此说明了不同方法显示的信息并不是绝对的,采用各类方法组合研究堆肥微生物的信息变化是很有必要的。     

Discriminating soil crust type,development stage and degree of disturbance in semiarid environments from their spectral characteristics

Biological soil crusts (BSCs) are increasingly recognized as common features in arid and semiarid ecosystems and play an important role in the hydrological and ecological functioning of these ecosystems. However, BSCs are very vulnerable to, in particular, human disturbance. This results in a complex spatial pattern of BSCs in various stages of development. Such patterns, to a large extent, determine runoff and erosion processes in arid and semiarid ecosystems. In recent years, visible and near infrared (Vis‐NIR) diffuse reflectance spectroscopy has been used for large‐scale mapping of the distribution of BSCs. Our goals were (i) to demonstrate the efficiency of Vis‐NIR spectroscopy in discriminating vegetation, physical soil crusts, various developmental stages of BSCs, and various types of disturbance on BSCs and (ii) to develop a classification system for these types of ground cover based on Vis‐NIR spectroscopy. Spectral measurements were taken of vegetation, physical crusts and various types of BSCs prior to, and following, trampling or removal with a scraper in two semiarid areas in SE Spain. The main spectral differences were: (i) absorption by water at about 1450 nm, more intense in the spectra of vegetation than in those of physical crusts or BSCs, (ii) absorption features at about 500 and 680 nm for the BSCs, which were absent or very weak for physical crusts, (iii) a shallower slope between about 750 and 980 nm for physical crusts and early‐successional BSCs than for later‐successional BSCs and (iv) a steeper slope between about 680 and 750 nm for the most developed BSCs. A partial least squares regression‐linear discriminant analysis of the spectral data resulted in a reliable classification (Kappa coefficients over 0.90) of the various types of ground cover and types of BSC disturbance. The distinctive spectral features of vegetation, physical crusts and the various developmental stages of BSCs were used to develop a classification system. This will be a promising tool for mapping BSCs with hyperspectral remote sensing.     

Seven years of enhanced water availability influences the physiological,structural, and functional attributes of a soil microbial community

Water availability is known to influence many aspects of microbial growth and physiology, but less is known about how complex soil microbial communities respond to changing water status. To understand how long-term enhancement of soil water availability (without flooding) influences microbial communities, we measured the seasonal dynamics of several community-level traits following >7 years of irrigation in a drought-prone tallgrass prairie soil. From late May to mid-September, water was supplied to the irrigated treatments based on calculated plant water demand. Phospholipid fatty acids (PLFA) were used to assess changes in microbial community structure and physiology. To assess the community-level physiological profile, microbial utilization of BIOLOG substrates was determined. After incubation for 2 days, the distribution of added ¹³C-glucose in microbial and respired pools was used as an index of substrate utilization efficiency. We also measured the relative contribution of fungi and bacteria to soil microbial biomass via substrate-induced respiration (SIR). Multivariate analysis of mol% PLFA and BIOLOG substrate utilization indicated that both water availability and sampling time influenced both the physiological and structural characteristics of the soil microbial community. Specific change in biomarker PLFA revealed a decreased ratio of cyclopropyl to ω7-precursors due to water addition, suggesting community-level stresses were reduced. Over the growing season, continuously greater water availability resulted in a 53% greater ratio of fungal to bacterial biomass using SIR, and a 65% increase in fungal PLFA. The number of substrates utilized by the cultivable microbial community tended to be greater in continuously wetted soil, especially during periods of low rainfall. While water dynamics appeared to be associated with some of the shifts in microbial community activity, structural and functional changes in the community appeared to be more closely linked to the cumulative effects of water regime on ecosystem properties. Seasonality strongly influenced microbial communities. The environmental factors associated with seasonal change need to be more closely probed to better understand the drivers of community structure and function.     

Soil microbial recolonisation after a fire in a Mediterranean forest

The capacity of different microbial groups to recolonise soil after a fire event will be decisive in determining the microbial community after the fire. Microbial recovery after a wildfire that occurred in Sierra la Grana (Alicante province, southeast Spain) was tracked for 32 months after the fire. Colony forming units (CFUs) of different microbial groups, microbial biomass, soil respiration, bacterial growth (leucine incorporation) and changes in the microbial community structure (phospholipid fatty acid (PLFA) analysis) were determined directly after the fire and four times during the recovery period. Direct effects were reflected by low values of most microbiological variables measured immediately after the fire. Microbial biomass increased during the first year after the fire but was below the unburned reference site 32 months after the fire. Bacterial activity and soil respiration showed the highest values immediately after the fire, but decreased to values similar to that of the unburned reference site or even lower (respiration) 32 months after the fire. Colony forming units of bacterial groups estimated by the plate count method peaked 8 months after the fire, but then decreased, showing values similar to the unburned reference site at the end of the study, with the exception of spore formers, which were 20 times higher than the reference site 32 months after the fire. Fungal CFUs were more sensitive to the fire and recovered more slowly than bacteria. Fungi recovering less rapidly than bacteria were also indicated by the PLFA pattern, with PLFAs indicative of fungi being less common after the fire. The recovery of microbial biomass and activity was mirrored by the initially very high levels of dissolved organic carbon being consumed and decreasing within 8 months after the fire. The wildfire event had thus resulted in a decrease in microbial biomass, with a more bacteria-dominated microbial community.     

The effects of fresh and stabilized pruning wastes on the biomass,structure and activity of the soil microbial community in a semiarid climate

The incorporation of organic amendments from pruning waste into soil may help to mitigate soil degradation and to improve soil fertility in semiarid ecosystems. However, the effects of pruning wastes on the biomass, structure and activity of the soil microbial community are not fully known. In this study, we evaluate the response of the microbial community of a semiarid soil to fresh and composted vegetal wastes that were added as organic amendments at different doses (150 and 300 t ha⁻¹) five years ago. The effects on the soil microbial community were evaluated through a suite of different chemical, microbiological and biochemical indicators, including enzyme activities, community-level physiological profiles (CLPPs) and phospholipid fatty acid analysis (PLFA). Our results evidenced a long-term legacy of the added materials in terms of soil microbial biomass and enzyme activity. For instance, cellulase activity reached 633 μg and 283 μg glucose g⁻¹ h⁻¹ in the soils amended with fresh and composted waste, respectively. Similarly, bacterial biomass reached 116 nmol g⁻¹ in the soil treated with a high dose of fresh waste, while it reached just 66 nmol g⁻¹ in the soil amended with a high dose of composted waste. Organic amendments produced a long-term increase in microbiological activity and a change in the structure of the microbial community, which was largely dependent on the stabilization level of the pruning waste but not on the applied dose. Ultimately, the addition of fresh pruning waste was more effective than the application of composted waste for improving the microbiological soil quality in semiarid soils.     

Soil microbial community composition and land use history in cultivated and grassland ecosystems of coastal California

Phospholipid ester-linked fatty acid (PLFA) profiles were used to evaluate soil microbial community composition for 9 land use types in two coastal valleys in California. These included irrigated and non-irrigated agricultural sites, non-native annual grasslands and relict, never-tilled or old field perennial grasslands. All 42 sites were on loams or sandy loams of similar soil taxa derived from granitic and alluvial material. We hypothesized that land use history and its associated management inputs and practices may produce a unique soil environment, for which microbes with specific environmental requirements may be selected and supported. We investigated the relationship between soil physical and chemical characteristics, management factors, and vegetation type with microbial community composition. Higher values of total soil C, N, and microbial biomass (total PLFA) and lower values of soil pH occurred in the grassland than cultivated soils. The correspondence analysis (CA) of the PLFA profiles and the canonical correspondence analysis (CCA) of PLFA profiles, soil characteristics, and site and management factors showed distinct groupings for land use types. A given land use type could thus be identified by soil microbial community composition as well as similar soil characteristics and management factors. Differences in soil microbial community composition were highly associated with total PLFA, a measure of soil microbial biomass, suggesting that labile soil organic matter affects microbial composition. Management inputs, such as fertilizer, herbicide, and irrigation, also were associated with the distinctive microbial community composition of the different cultivated land use types.     

Distribution of microbial biomass and phospholipid fatty acids in Podzol profiles under coniferous forest

Microbial‐derived phospholipid fatty acids (PLFAs) can be used to characterize the microbial communities in soil without the need to isolate individual fungi and bacteria. They have been used to assess microbial communities of humus layers under coniferous forest, but nothing is known of their distribution in the deeper soil. To investigate the vertical distribution we sampled nine Podzol profiles on a 100‐m‐long transect in a coniferous forest and analysed for their microbial biomass and PLFA pattern to a depth of 0.4 m. The transect covered a fertility gradient from Vaccinium vitis‐idaea forest site type to Vaccinium myrtillus forest site type. The cores were divided into humus (O) and eluvial (E) layers and below that into 10‐cm sections and designated as either illuvial (B) or parent material (C), or as a combination (BC). Two measures of microbial biomass analyses were applied: substrate‐induced respiration (SIR) to determine microbial biomass C (C_mic), and the sum of the extracted microbial‐derived phospholipid fatty acids (totPLFA). The soil fertility had no effect on the results. The C_mic correlated well with totPLFA (r= 0.86). The microbial biomass decreased with increasing depth. In addition the PLFA pattern changed with increased depth as assessed with principal component analysis, indicating a change in the microbial community structure. The composition of the PLFAs in the O layer differed from that in the E layer and both differed from the upper part of the B layer and from the rest of the BC layers. The deeper parts of the B layer (BC₁, BC₂ and BC₃) were similar to one other. The O layer had more 18:2ω6, a PLFA indicator of fungi, whereas the E layer contained relatively more of the PLFAs 16:1ω9, 18:1ω7 and cy19:0 common in gram‐negative bacteria. With increased depth the relative amount of 10Me18:0, the PLFA indicator for actinomycetes, increased. We conclude that the PLFA method is a promising discriminator between the microbial community structures of the horizons in Podzols.