Controls on soil nitrogen cycling and microbial community composition across land use and incubation temperature

We conducted a laboratory incubation of forest (Scots pine (Pinus sylvestris) or beech (Fagus sylvatica)), grassland (Trifolium repens/Lolium perenne) and arable (organic and conventional) soils at 5 and 25 °C. We aimed to clarify the mechanisms of short-term (2-weeks) nitrogen (N) cycling processes and microbial community composition in relation to dissolved organic carbon (DOC) and N (DON) availability and selected soil properties. N cycling was measured by ¹⁵N pool dilution and microbial community composition by denaturing gradient gel electrophoresis (DGGE), phospholipid fatty acid (PLFA) and community level physiological profiles (CLPP). Soil DOC increased in the order of arable<grassland<forest soil while DON and gross N fluxes increased in the order of forest<arable<grassland soil; land use had no affect on respiration rate. Soil DOC was lower, while respiration, DON and gross N fluxes were higher at 25 than 5 °C. Gross N fluxes, respiration and bacterial biomass were all positively correlated with each other. Gross N fluxes were positively correlated with pH and DON, and negatively correlated with organic matter, fungal biomass, DOC and DOC/DON ratio. Respiration rate was positively correlated with bacterial biomass, DON and DOC/DON ratio. Multiple linear modelling indicated that soil pH, organic matter, bacterial biomass, DON and DOC/DON ratio were important in predicting gross N mineralization. Incubation temperature, pH and total-C were important in predicting gross nitrification, while gross N mineralization, gross nitrification and pH were important in predicting gross N immobilization. Permutation multivariate analysis of variance indicated that DGGE, CLPP and PLFA profiles were all significantly (P<0.05) affected by land use and incubation temperature. Multivariate regressions indicated that incubation temperature, pH and organic matter content were important in predicting DGGE, CLPP and PLFA profiles. PLFA and CLPP were also related to DON, DOC, ammonium and nitrate contents. Canonical correlation analysis showed that PLFA and CLPP were related to differences in the rates of gross N mineralization, gross nitrification and soil respiration. Our study indicates that vegetation type and/or management practices which control soil pH and mediate dissolved organic matter availability were important predictors of gross N fluxes and microbial composition in this short-term experiment.     

Microbial communities of a native perennial bunchgrass do not respond consistently across a gradient of land-use intensification

To test if native perennial bunchgrasses cultivate the same microbial community composition across a gradient in land-use intensification, soils were sampled in fall, winter and spring in areas under bunchgrasses (‘plant’) and in bare soils (‘removal’) in which plots were cleared of living plants adjacent to native perennial bunchgrasses (Nassella pulchra). The gradient in land-use intensification was represented by a relict perennial grassland, a restored perennial grassland, and a perennial grass agriculture site on the same soil type. An exotic annual grassland site was also included because perennial bunchgrasses often exist within a matrix of annual grasses in California. Differences in soil resource pools between ‘plant’ and ‘removal’ soils were observed mainly in the relict perennial grassland and perennial grass agriculture site. Seasonal responses occurred in all sites. Microbial biomass carbon (C) and dissolved organic C were greater under perennial bunchgrasses in the relict perennial grassland and perennial grass agriculture site when comparing treatment means of ‘plant’ vs. ‘removal’ soil. In general, soil moisture, microbial respiration, and nitrate decreased from fall to spring in ‘plant’ and ‘removal’ soils, while soil ammonium and net mineralizable nitrogen (N) increased only in ‘plant’ soils. A canonical correspondence analysis (CCA) of phospholipid fatty acid (PLFA) profiles from all sites showed that land-use history limits the similarity of microbial community composition as do soil C and N dynamics among sites. When PLFA profiles from individual sites were analyzed by CCA, different microbial PLFA markers were associated with N. pulchra in each site, indicating that the same plant species does not retain a unique microbial fingerprint across the gradient of land-use intensification.     

Substrate inputs and pH as factors controlling microbial biomass, activity and community structure in an arable soil

Our aim was to determine whether the smaller biomasses generally found in low pH compared to high pH arable soils under similar management are due principally to the decreased inputs of substrate or whether some factor(s) associated with pH are also important. This was tested in a soil incubation experiment using wheat straw as substrate and soils of different pHs (8.09, 6.61, 4.65 and 4.17). Microbial biomass ninhydrin-N, and microbial community structure evaluated by phospholipid fatty acids (PLFAs), were measured at 0 (control soil only), 5, 25 and 50 days and CO₂ evolution up to 100 days. Straw addition increased biomass ninhydrin-N, CO₂ evolution and total PLFA concentrations at all soil pH values. The positive effect of straw addition on biomass ninhydrin-N was less in soils of pH 4.17 and 4.65. Similarly total PLFA concentrations were smallest at the lowest pH. This indicated that there is a direct pH effect as well as effects related to different substrate availabilities on microbial biomass and community structure. In the control soils, the fatty acids 16:1ω5, 16:1ω7c, 18:1ω7c&9t and i17:0 had significant and positive linear relationships with soil pH. In contrast, the fatty acids i15:0, a15:0, i16:0 and br17:0, 16:02OH, 18:2ω6,9, 17:0, 19:0, 17:0c9,10 and 19:0c9,10 were greatest in control soils at the lowest pHs. In soils given straw, the fatty acids 16:1ω5, 16:1ω7c, 15:0 and 18:0 had significant and positive linear relationships with pH, but the concentration of the monounsaturated 18:1ω9 PLFA decreased at the highest pHs. The PLFA profiles indicative of Gram-positive bacteria were more abundant than Gram-negative ones at the lowest pH in control soils, but in soils given straw these trends were reversed. In contrast, straw addition changed the microbial community structures least at pH 6.61. The ratio: [fungal PLFA 18:2w6,9]/[total PLFAs indicative of bacteria] indicated that fungal PLFAs were more dominant in the microbial communities of the lowest pH soil. In summary, this work shows that soil pH has marked effects on microbial biomass, community structure, and response to substrate addition.     

Comparison of soil fungal/bacterial ratios in a pH gradient using physiological and PLFA-based techniques

We have compared the total microbial biomass and the fungal/bacterial ratio estimated using substrate-induced respiration (SIR) in combination with the selective inhibition technique and using the phospholipid fatty acid (PLFA) technique in a pH gradient (3.0-7.2) consisting of 53 mature broad-leaved forest soils. A fungal/bacterial biomass index using the PLFA technique was calculated using the PLFA 18:2ω6,9 as an indicator of fungal biomass and the sum of 13 bacterial specific PLFAs as indicator of the bacterial biomass. Good linear correlation (p<0.001) was found between the total microbial biomass estimated with SIR and total PLFAs (totPLFA), indicating that 1 mg biomass-C was equivalent to 130 nmol totPLFA. Both biomass estimates were positively correlated to soil pH. The fungal/bacterial ratio measured using the selective inhibition technique decreased significantly with increasing pH from about 9 at pH 3 to approximately 2 at pH 7, while the fungal/bacterial biomass index using PLFA measurements tended to increase slightly with increasing soil pH. Good correlation between the soil content of ergosterol and of the PLFA 18:2ω6,9 indicated that the lack of congruency between the two methods in estimating fungal/bacterial ratios was not due to PLFA 18:2ω6,9-related non-fungal structures to any significant degree. Several PLFAs were strongly correlated to soil pH (R² values >0.8); for example the PLFAs 16:1ω5 and 16:1ω7c increased with increasing soil pH, while i16:0 and cy19:0 decreased. A principal component analysis of the total PLFA pattern gave a first component that was strongly correlated to soil pH (R²=0.85, p<0.001) indicating that the microbial community composition in these beech/beech-oak forest soils was to a large extent determined by soil pH.     

Organic matter, microbial biomass and enzyme activity of soils under different crop rotations in the tropics

Soil organic matter level, soil microbial biomass C, ninhydrin-N, C mineralization, and dehydrogenase and alkaline phosphatase activity were studied in soils under different crop rotations for 6 years. Inclusion of a green manure crop of Sesbania aculeata in the rotation improved soil organic matter status and led to an increase in soil microbial biomass, soil enzyme activity and soil respiratory activity. Microbial biomass C increased from 192 mg kg^–1 soil in a pearl millet-wheat-fallow rotation to 256 mg kg^–1 soil in a pearl millet-wheat-green manure rotation. Inclusion of an oilseed crop such as sunflower or mustard led to a decrease in soil microbial biomass, C mineralization and soil enzyme activity. There was a good correlation between microbial biomass C, ninhydrin-N and dehydrogenase activity. The alkaline phosphatase activity of the soil under different crop rotations was little affected. The results indicate the green manuring improved the organic matter status of the soil and soil microbial activity vital for the nutrient turnover and long-term productivity of the soil. Received: 7 January 1996     

Stoichiometric responses of soil microflora to nutrient additions for two temperate forest soils

The ratios of soil carbon (C) to nitrogen (N) and C to phosphorus (P) are much higher in Chinese temperate forest soils than in other forest soils, implying that N and P might limit microbial growth and activities. The objective of this study was to assess stoichiometric responses of microbial biomass, enzyme activities, and respiration to N and P additions. We conducted a nutrient (N, P, and N + P) addition experiment in two temperate soils under Korean pine (Pinus koraiensis) plantation and natural broadleaf forest in Northeast China and measured the microbial biomass C, N, P; the activities of β-glucosidase (BG), N-acetyl-β-glucosaminidase (NAG), and acid and alkaline phosphomonoesterase (AP); and the microbial respiration in the two soils. Nitrogen addition increased microbial biomass N and decreased microbial biomass C-to-N ratio and microbial respiration in the two soils. Nitrogen addition decreased NAG activity to microbial biomass N ratio, P addition decreased AP activity to microbial biomass P ratio, and N, P, and N + P additions all increased BG activity to microbial biomass C ratio. These results suggest that microbial stoichiometry is not strictly homeostatic in response to nutrient additions, especially for N addition. The responses of enzyme activities to nutrient additions support the resource allocation theory. The N addition induced a decline in microbial respiration, implying that atmospheric N deposition may reduce microbial respiration, and consequently increase soil C sequestration in the temperate region.     

Microbial community PLFA and PHB responses to ecosystem restoration in tallgrass prairie soils

Native North American prairie grasslands are renowned for the richness of their soils, having excellent soil structure and very high organic content and microbial biomass. In this study, surface soils from three prairie restorations of varying ages and plant community compositions were compared with a nearby undisturbed native prairie remnant and a cropped agricultural field in terms of soil physical, chemical and microbial properties. Soil moisture, organic matter, total carbon, total nitrogen, total sulfur, C:N, water-holding capacity and microbial biomass (total PLFA) were significantly greater (p<0.05) in the virgin prairie remnant as well as the two long-term (21 and 24 year) prairie restorations, compared with the agricultural field and the restoration that was begun more recently (7 years prior to sampling). Soil bulk density was significantly greater (p<0.05) in the agricultural and recently restored sites. In most cases, the soil quality indicators and microbial community structures in the restoration sites were intermediate between those of the virgin prairie and the agricultural sites. Levels of poly-β-hydroxybutyrate (PHB) and PLFA indicators of nutritional stress were significantly greater (p<0.05) in the agricultural and recent restoration sites than in the long-term restorations or the native prairie. Samples could be assigned to the correct site by discriminant analysis of the PLFA data, with the exception that the two long-term restoration sites overlapped. Redundancy analysis showed that prairie age (p<0.005) was the most important environmental factor in determining the PLFA microbial community composition, with C:N (p<0.015) also being significant. These findings demonstrate that prairie restorations can lead to improved quality of surface soils. We predict that the conversion of farmland into prairie will shift the soil quality, microbial community biomass and microbial community composition in the direction of native prairies, but with the restoration methods tested it may take many decades to approach the levels found in a virgin prairie throughout the soil profile.     

Response of soil microbial community and diversity to increasing water salinity and nitrogen fertilization rate in an arid soil

The scarcity of fresh water has forced farmers to use saline water (SW) for irrigation. It is important to understand the response of the soil microbial community and diversity to saline irrigation water. The objective of this study was to determine the effects of irrigation water salinity and nitrogen fertilization rates on soil physicochemical properties, microbial activity, microbial biomass, and microbial functional diversity. The field experiment consisted of a factorial design with three levels of irrigation water salinity (electrical conductivities (ECs) of 0.35, 4.61 or 8.04?dS?m^?1) and two nitrogen rates (0 and 360?kg?N?ha^?1). The results showed that the 4.61 and 8.04?dS?m^?1 treatments both reduced soil microbial biomass C (MBC), microbial biomass N (MBN), basal respiration, total phospholipid fatty acid (PLFA), bacterial PLFA, fungal PLFA, and fungal:bacterial ratios. In contrast, the SW treatments increased the MBC:MBN ratio. Nitrogen fertilization increased soil MBC, MBN, basal respiration, total PLFA, bacterial PLFA, and gram-negative bacterial PLFA. In contrast, N fertilization decreased gram-positive bacterial PLFA, fungal PLFA, and fungal:bacterial ratios. Average well color development, Richness, and Shannon's Index were always lowest in the 8.04?dS?m^?1 treatment. Carbon utilization patterns in the 8.04?dS?m^?1 treatment were different from those in the 0.35?dS?m^?1 treatment. In conclusion, five years of irrigation with brackish or SW reduced the soil microbial biomass, activity, and functional diversity, which may cause the deterioration of soil quality. Thus, the high-salinity water (EC?>?4.61?dS?m^?1) is not appropriate as a single irrigation water resource. Proper N fertilizer input may overcome some of the negative effects of salinity on soil microbial.     

Influence of Tea Cultivation on Soil Microbial Biomass and Substrate Utilization Pattern

Abstract

The study was conducted to evaluate the effect of tea cultivation on soil microbial biomass and community structure. Soil pH, extractable aluminum (Al), organic carbon (C_org) and total nitrogen were considerably modified by tea cultivation. Long‐term tea cultivation resulted in the increase of microbial biomass C (C_mic), microbial biomass N (N_mic), and basal respiration. The metabolic quotient declined as the tea cultivation age increased. The adjacent citrus orchard soil showed a higher C_mic/C_org ratio than the tea orchard soils. Microtitration plates with 21 carbon sources and two different pH levels (4.7 and 7.0) were used to determine the substrate utilization pattern of these soils. The average well color development (AWCD) of the carbon sources in the plates did not vary in a consistent manner with the microbial biomass. Multivariate analysis of sole carbon source utilization pattern demonstrated that land‐use history had a significant effect on substrate utilization pattern. The pH 4.7 characterization medium can increase the discrimination of this technique and is more adequate than the conventional neutral medium for the tea orchard soils.     

Drivers of microbial respiration and net N mineralization at the continental scale

The dominant pools of C and N in the terrestrial biosphere are in soils, and understanding what factors control the rates at which these pools cycle is essential in understanding soil CO₂ production and N availability. Many previous studies have examined large scale patterns in decomposition of C and N in plant litter and organic soils, but few have done so in mineral soils, and fewer have looked beyond ecosystem specific, regional, or gradient-specific drivers. In this study, we examined the rates of microbial respiration and net N mineralization in 84 distinct mineral soils in static laboratory incubations. We examined patterns in C and N pool sizes, microbial biomass, and process rates by vegetation type (grassland, shrubland, coniferous forest, and deciduous/broadleaf forest). We also modeled microbial respiration and net N mineralization in relation to soil and site characteristics using structural equation modeling to identify potential process drivers across soils. While we did not explicitly investigate the influence of soil organic matter quality, microbial community composition, or clay mineralogy on microbial process rates in this study, our models allow us to put boundaries on the unique explanatory power these characteristics could potentially provide in predicting respiration and net N mineralization. Mean annual temperature and precipitation, soil C concentration, microbial biomass, and clay content predicted 78% of the variance in microbial respiration, with 61% explained by microbial biomass alone. For net N mineralization, only 33% of the variance was explained, with mean annual precipitation, soil C and N concentration, and clay content as the potential drivers. We suggest that the high R² for respiration suggests that soil organic matter quality, microbial community composition, and clay mineralogy explain at most 22% of the variance in respiration, while they could explain up to 67% of the variance in net N mineralization.     

Role of soil drying in nitrogen mineralization and microbial community function in semi-arid grasslands of north-west Australia

We examined effects of wetting and then progressive drying on nitrogen (N) mineralization rates and microbial community composition, biomass and activity of soils from spinifex (Triodia R. Br.) grasslands of the semi-arid Pilbara region of northern Australia. We compared soils under and between spinifex hummocks and also examined impacts of fire history on soils over a 28 d laboratory incubation. Soil water potentials were initially adjusted to −100 kPa and monitored as soils dried. We estimated N mineralization by measuring changes in amounts of nitrate (NO₃⁻-N) and ammonium (NH₄⁺-N) over time and with change in soil water potential. Microbial activity was assessed by amounts of CO₂ respired. Phospholipid fatty acid (PLFA) analyses were used to characterize shifts in microbial community composition during soil drying. Net N mineralized under hummocks was twice that of open spaces between hummocks and mineralization rates followed first-order kinetics. An initial N mineralization flush following re-wetting accounted for more than 90% of the total amount of N mineralized during the incubation. Initial microbial biomass under hummocks was twice that of open areas between hummocks, but after 28 d microbial biomass was<2 μ g⁻¹ ninhydrin N regardless of position. Respiration of CO₂ from soils under hummocks was more than double that of soils from between hummocks. N mineralization, microbial biomass and microbial activity were negligible once soils had dried to −1000 kPa. Microbial community composition was also significantly different between 0 and 28 d of the incubation but was not influenced by burning treatment or position. Regression analysis showed that soil water potential, microbial biomass N, NO₃⁻-N, % C and δ¹⁵N all explained significant proportions of the variance in microbial community composition when modelled individually. However, sequential multiple regression analysis determined only microbial biomass was significant in explaining variance of microbial community compositions. Nitrogen mineralization rates and microbial biomass did not differ between burned and unburned sites suggesting that any effects of fire are mostly short-lived. We conclude that the highly labile nature of much of soil organic N in these semi-arid grasslands provides a ready substrate for N mineralization. However, process rates are likely to be primarily limited by the amount of substrate available as well as water availability and less so by substrate quality or microbial community composition.     

Soil microbiological and chemical effects of a nitrogen-fixing shrub in poplar plantations in semi-arid region of Northeast China

Nitrogen (N)-fixing species have a function to enrich N in soil. Mixing N-fixing shrub species into poplar stands can be assumed as a measure to increase productivity while improving soil fertility. To verify this assumption and to understand the temporal influences of N-fixing shrub species mixed into poplar plantations on soil fertility, we investigated selected soil chemical and microbial properties in pure poplar (Populus × xiaozhuanica W. Y. Hsu et Liang) and mixed poplar–seabuckthorn (Hippophae rhamnoides L.) stands at ages of five and 15 years in a semi-arid region of Northeast China. Both stands at age of five have similar values of aboveground biomass, total soil organic C concentration, total N concentration, microbial biomass C, and metabolic quotient; however, at age of 15, these values except for soil metabolic quotient are significantly greater in mixed poplar–seabuckthorn stand than in pure poplar stand. The soil metabolic quotient is lower in the former stand than in the latter stand. Our results suggest that, in semi-arid regions, mixing N-fixing shrub species into poplar plantations can improve soil fertility in a long run rather than in a short term; therefore, mixing N-fixing shrub species into poplar stands is an option to improve soil fertility and increase productivity in a long run.     

Responses of soil microbial biomass and community composition to biological soil crusts in the revegetated areas of the Tengger Desert

As a key component of desert ecosystems, biological soil crusts (BSCs) play an important role in dune fixation and maintaining soil biota. Soil microbial properties associated with the colonization and development of BSCs may indicate soil quality changes, particularly following dune stabilization. However, very little is known about the influence of BSCs on soil microbes in sand dunes. We examined the influence of BSCs on soil microbial biomass and community composition in revegetated areas of the Tengger Desert. BSCs increased soil microbial biomass (biomass C and N), microbial phospholipid fatty acid (PLFA) concentrations and the ratio of fungal to bacterial PLFAs. The effects varied with crust type and crust age. Moss crusts had higher microbial biomass and microbial PLFA concentrations than cyanobacteria-lichen crusts. Crust age was positively correlated with microbial biomass C and N, microbial PLFA concentrations, bacterial PLFA concentrations, fungal PLFA concentrations and the ratio of fungal to bacterial PLFAs. BSCs significantly affected microbial biomass C and N in the 0–20 cm soil layers, showing a significant negative correlation with soil depth. The study demonstrated that the colonization and development of BSCs was beneficial for soil microbial properties and soil quality in the revegetated areas. This can be attributed to BSCs increasing topsoil thickness after dunes have been stabilized, creating suitable habitats and providing an essential food source for soil microbes.     

Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon

Altered rates of native soil organic matter (SOM) mineralisation in the presence of labile C substrate (‘priming’), is increasingly recognised as central to the coupling of plant and soil-biological productivity and potentially as a key process mediating the C-balance of soils. However, the mechanisms and controls of SOM-priming are not well understood. In this study we manipulated microbial biomass size and composition (chloroform fumigation) and mineral nutrient availability to investigate controls of SOM-priming. Effects of applied substrate (¹³C-glucose) on mineralisation of native SOM were quantified by isotopic partitioning of soil respiration. In addition, the respective contributions of SOM-C and substrate-derived C to microbial biomass carbon (MBC) were quantified to account for pool-substitution effects (‘apparent priming’). Phospholipid fatty acid (PLFA) profiles of the soils were determined to establish treatment effects on microbial community structure, while the ¹³C-enrichment of PLFA biomarkers was used to establish pathways of substrate-derived C-flux through the microbial communities. The results indicated that glucose additions increased SOM-mineralisation in all treatments (positive priming). The magnitude of priming was reduced in fumigated soils, concurrent with reduced substrate-derived C-flux through putative SOM-mineralising organisms (fungi and actinomycetes). Nutrient additions reduced the magnitude of positive priming in non-fumigated soils, but did not affect the distribution of substrate-derived C in microbial communities. The results support the view that microbial community composition is a determinant of SOM-mineralisation, with evidence that utilisation of labile substrate by fungal and actinomycete (but not Gram-negative) populations promotes positive SOM-priming.     

Physiological, biochemical and molecular responses of the soil microbial community after afforestation of pastures with Pinus radiata

Afforestation and deforestation are key land-use changes across the world, and are considered to be dominant factors controlling ecosystem functioning and biodiversity. However, the responses of soil microbial communities to these land-use changes are not well understood. Because changes in soil microbial abundance and community structure have consequences for nutrient cycling, C-sequestration and long-term sustainability, we investigated impacts of land-use change, age of stand and soil physico-chemical properties on fungal and bacterial communities and their metabolic activities. This study was carried out at four sites in two geographical locations that were afforested on long-established pastures with Pinus radiata D. Don (pine). Two of the sites were on volcanic soils and two on non-volcanic soils and stand age ranged from 5 to 20 y. Microbial communities were analysed by biochemical (phospho-lipid fatty acids; PLFA) and molecular (multiplex-terminal restriction fragment length polymorphism; M-TRFLP) approaches. Both site and stand age influenced microbial properties, with changes being least detectable in the 5-y-old stand. Land use was a key factor influencing soil metabolic activities as measured by physiological profiling using MicroResp. Pasture soils had higher microbial biomass (P < 0.001), and metabolic activities (P < 0.001), and basal respiration rates were up to 2.8-times higher than in the pine soils. Microbial abundance analysis by PLFA showed that the fungal to bacterial ratio was higher in the pine soils (P < 0.01). Community analysis suggested that soil bacterial communities were more responsive to site (principal component 1; P < 0.001) than to land use (principal component 5; P < 0.001). In contrast, the fungal community was more affected by land-use change (principal component 1; P < 0.001) than by site, although site still had some influence on fungal community structure (principal component 2; P < 0.001). Redundancy analysis also suggested that bacterial and fungal communities responded differently to various soil abiotic properties, land-use change and location of sites. Overall, our results indicate that the change in land use from pasture to P. radiata stands had a direct impact on soil fungal communities but an indirect effect, through its effects on soil abiotic properties, on bacterial communities. Most of the changes in bacterial communities could be explained by altered soil physico-chemical properties associated with afforestation of pastures.     

Impact of black carbon addition to soil on the determination of soil microbial biomass by fumigation extraction

The efficiency of the fumigation extraction method on the determination of soil microbial biomass carbon and ninhydrin-N was tested in three different soils (UK grassland, UK arable, Chinese arable) amended with black carbon (biochar or activated charcoal). Addition of activated charcoal to soil resulted in a significant decrease in K₂SO₄ extractable carbon and ninhydrin-N in all three soils, whereas the addition of biochar generally did not. A lower concentration of the extraction reagent (0.05 M vs. 0.5 M K₂SO₄) resulted in a significantly lower extraction efficiency in the grassland soil. The extraction efficiency of organic carbon was more affected by black carbon than that of ninhydrin-N, which resulted in a decreased biomass C/ninhydrin-N ratio. The impact of black carbon on the extraction efficiency of soil microbial biomass depended on the type of black carbon, on the concentration of the extraction medium and on soil type.     

Microbial biomass and activity in salt affected soils under arid conditions

The effects of salinity on the size, activity and community structure of soil microorganisms in salt affected arid soils were investigated in Shuangta region of west central Anxi County, Gansu Province, China. Eleven soils were selected which had an electrical conductivity (EC) gradient of 0.32–23.05 mS cm⁻¹. There was a significant negative exponential relationship between EC and microbial biomass C, the percentage of soil organic C present as microbial biomass C, microbial biomass N, microbial biomass N to total N ratio, basal soil respiration, fluorescein diacetate (FDA) hydrolysis rate, arginine ammonification rate and potentially mineralizable N. The exponential relationships with EC demonstrate the highly detrimental effect that soil salinity had on the microbial community. In contrast, the metabolic quotient (qCO₂) was positively correlated with EC, and a quadratic relationship between qCO₂ and EC was observed. There was an inverse relationship between qCO₂ and microbial biomass C. These results indicate that higher salinity resulted in a smaller, more stressed microbial community which was less metabolically efficient. The biomass C to biomass N ratio tended to be lower in soils with higher salinity, reflecting the bacterial dominance in microbial biomass in saline soils. Consequently, our data suggest that salinity is a stressful environment for soil microorganisms.     

Comparison of chloroform fumigation-extraction, phospholipid fatty acid, and DNA methods to determine microbial biomass in forest humus

Techniques developed to measure microbial biomass in mineral soils may not give reliable results in humus. We evaluated the relationships between three techniques to estimate microbial biomass in forest humus: chloroform fumigation-extraction (CFE), total extractable phospholipid fatty acids (PLFA), and extractable DNA. There was a good relationship between PLFA and CFE (R²=0.96), with a slope slightly different from that previously reported for mineral soils (1 nmol PLFA corresponded to a flush of 3.2 μg C released by fumigation in humus cf. 2.4 μg C in mineral soil). There was no relationship between DNA concentration and the other two measurements of microbial biomass. This may be due, in part, to the high fungal biomass in forest humus, as DNA concentration per unit biomass is much more variable for fungi than bacteria.     

Microbial degradation of hydrolysable and condensed tannin polyphenol-protein complexes in soils from different land-use histories

Polyphenols are capable of binding to proteins and form polyphenol-protein complexes thus reducing the release of N from decomposing plant materials. The objective of this work was to test if under polyphenol-rich vegetations adapted microbial communities had developed capable of breaking down recalcitrant polyphenol-protein complexes. Soils used for this investigation were from different 10-year-old tropical agricultural systems (maize, sugarcane plots and Gliricidia sepium or Peltophorum dasyrrachis woodlots) and natural systems (secondary forest and Imperata cylindrica grassland). TA (tannic acid, hydrolysable tannin), QUE (quebracho, condensed tannin), BSA (bovine serum albumin, protein) or TA/BSA and QUE/BSA polyphenol-protein complexes were incubated at 28 °C in these soils. CO₂-C and ¹³C evolution were periodically monitored and mineral N release, microbial biomass N and phospholipid fatty acid (PLFA) profiles measured at the end.QUE was able to bind about 25% more protein than TA. In all systems the individual uncomplexed substrates were more easily degraded than the complexes. On average, net cumulative CO₂-C evolution from TA/BSA complexes was more than 5 times higher than from QUE/BSA complexes, indicating higher C availability and/or lower protection capability of TA compared to QUE. However, net N release was higher from QUE/BSA than from TA/BSA probably due to their higher protein-binding capacity and associated larger degradation of partly unprotected protein as suggested by ¹³C-CO₂ signatures. Microbial respiration patterns indicated that polyphenol complexes were initially degraded more quickly in the maize cropping system than in soils from under polyphenol-rich communities (Peltophorum and natural forest) but this pattern reversed with time. Long-term incubation of QUE/BSA complexes even caused a negative effect on microbial respiration in agricultural soils with low polyphenol contents (e.g. maize and sugarcane).Incubation of polyphenol complexes in soil depressed microbial biomass N in maize, sugarcane, Imperata and forest systems and led to reduced soil pH. However, microbial biomass was increased under the polyphenol-rich vegetation of Peltophorum. The PLFA group 18:2w6,9 was highly enhanced by condensed tannin-protein complexes additions as compared to control and hydrolysable polyphenol-protein complexes in soils with high polyphenol contents. Polyphenol complexes increased the fungi:bacteria ratio in systems with a high polyphenol content, particularly with condensed tannin complexes. The results indicated that systems with a high polyphenol content favoured development of fungal communities that are highly adaptable to phenol-rich soil conditions and high acidity, particularly with regards to the more recalcitrant condensed tannin-protein complexes.