Estimates of heritability and genetic correlations for growth‐related traits in the tiger prawn Penaeus monodon

Heritabilities and genetic and phenotypic correlations were estimated for body weight (BW), body length (BL), carapace length (CL), carapace width (CW) and carapace height (CH) of the Penaeus monodon from measurements on progeny at 6 months of age resulting from a nested mating design. Estimation was made on data from 41 full‐sib and 10 half‐sib families. The estimated heritabilities for these traits were 0.13–0.24, and the significantly phenotypic and genetic correlations were 0.81–0.94 and 0.88–1.00, respectively. The present results indicate that genetic improvement through selective breeding conducted on P. monodon might be feasible and would be an efficient method to obtain a positive response to selection.     

Heritability for growth traits in giant freshwater prawn,Macrobrachium rosenbergii (de Mann 1879) based on best linear unbiased prediction methodology

In this study, heritability was estimated for growth‐related traits of giant freshwater prawn (Macrobrachium rosenbergii) before and after morphological sexual differentiation. Estimation was made on data from 16 full‐sib and eight half‐sib families. The variance estimation was performed using a univariate mixed linear animal model and variance components were analysed following an animal model using restricted maximum likelihood procedure using average information algorithm. Heritability estimates (h²) varied considerably with ages. At 2 months old, h²for carapace length (CL; 0.35±0.15) and body weight (BW; 0.26±0.13) were higher than those estimated at 5 months old, based on mixed sex data. However, when data were sorted by sex, h² calculated from data of females were higher than those of males for CL (0.26±0.16 vs. 0.10±0.06), BW (0.28±0.17 vs. 0.12±0.08), body length (0.40±0.17 vs. 0.11±0.07), total length (0.47±0.18 vs. 0.11±0.07) and claw length (0.29±0.16 vs. 0.03±0.04). The same trend was observed for traits at 6 months old in both bulk and individual rearing.     

Genetic parameters of growth and survival in the Pacific oyster Crassostrea gigas

The Pacific oyster Crassostrea gigas is a representative bivalve mollusc that is widely cultured in the world and is the largest molluscan group cultured in China. In order to assess the feasibility of improving survival of C. gigas through genetic selection, the heritability and genetic correlations for growth and survival traits between different life stages were examined. Genetic parameters were estimated based on intraclass correlations of 49 full‐sib families (29 half‐sib families) in larvae (4 and 20 days after fertilization) and spat (140 days after fertilization) stages. The heritability for growth traits in larvae and spat was 0.30–0.86 and 0.53–0.59, respectively, and varied with ages. The heritability of survival was low in larvae (0.13 ± 0.05 and 0.17 ± 0.04, respectively for 4 and 20 days after fertilization) but medium (0.39 ± 0.07) in spat, suggesting that selection for increasing spat survival was feasible. The genetic correlation between growth traits within age was medium to high and positive (ranging from 0.47 to 0.96, respectively, between shell length (SL) and shell height (SH) at 20 days and between SL and SH at 140 days after fertilization), suggesting that selection to improve single growth trait will cause positive response in another growth traits in C. gigas. The genetic correlations between survival and growth traits at 140 days were low but positive (ranging from 0.23 to 0.27, respectively, between survival and SH and between survival and SL at 140 days after fertilization), suggesting that selection for survival may not have a negative response in growth. Overall, this study suggests that survival traits should be taken as improving target of next selection breeding programme in C. gigas.     

Should only females of giant freshwater prawn Macrobrachium rosenbergii be selected in genetic improvement programmes?

Sexual dimorphism is widely observed in almost all farmed aquatic animal species but giant freshwater pawn (GFP) is unique, with males characterized by three main morphotypes (blue claw, orange claw and small males) and females by different reproduction status (ovary, berried egg and already‐spawned females). There has been reported evidence that the effect of male morphotype may have masked genetic variation in growth‐related traits, as a result the heritability for male body weight was lower than that estimated in female. A pending question has arisen whether selection should be made in female only. To answer this question, we used an 8‐year data set from a long‐term selection programme (2008–2015) for high growth in this species comprising 106,756 individuals that were offspring of 515 sires and 810 dams. The body weight data of female and male GFP or of each morphotype was treated as a separate trait and a multi‐trait approach was used to estimate genetic correlations for homologous traits between sexes and between morphotypes. Our analysis showed that there were little differences in the heritability estimates between female and male. In female, mature ovary individual displayed higher heritability than berried egg and already‐spawned females. For male, the heritability for blue claw, orange claw and small males were 0.11, 0.06 and 0.00 respectively. Between‐sex genetic correlation was moderate (0.55 ± 0.11) for body weight, suggesting that the trait expressions in female and male may be genetically different. In female, the genetic correlations for body weight among three female types were close to one (0.91–0.94). In contrast, the genetic correlations for body weight between male morphotypes especially between blue claw or orange claw and small males were low (0.15–0.25). Furthermore, we estimated genetic gain as the difference in least square means (LSM) or estimated breeding values (EBV) between the selection line and control group. The genetic gain in body weight was smaller in females than in males. It is concluded that there is no need to run separate breeding programme for female and male GFP. A combined selection using both female and male data can achieve selection response for body weight as demonstrated in the present study.     

Survival,male morphotypes,female and male proportion,female reproductive status and tag loss in crosses among three populations of freshwater prawn Macrobrachium rosenbergii (de Man) in India

The present study examined the variation in survival, proportion of male morphotypes, female and male proportion, female reproductive status and tag losses in nine crosses from a complete (3 × 3) diallel mating of three populations of Macrobrachium rosenbergii in India. The populations originated from Gujarat (north‐west), Kerala (south‐west) and Odisha (east), representing different agro‐ecological regions in India. Progeny from 60 families (4773 juveniles) were individually tagged and reared for 16–17 weeks in earthen ponds. Binary logistic regression was used to analyse the data. Survival rate was greatest (0.88) for Kerala × Odisha (KO; the first letter represents the sire), whereas it was lowest (0.75) for both Kerala × Kerala (KK) and Gujarat × Kerala (GK). Significantly greater proportions of large male morphotypes were observed in KK cross and in combinations involving Kerala population. The highest proportion of immature females, as well as of non‐berried females, was observed in the Odisha × Odisha (OO) cross. Tag loss was greatest for KK (0.35) and lowest for GG (0.19). We found significant variations among crosses for all studied traits suggesting the possibility of including them in genetic improvement programmes of this species.     

Genetic parameters of survival for six generations in the giant freshwater prawn Macrobrachium rosenbergii

Genetic parameters were estimated for survival of Macrobrachium rosenbergii using a fully pedigreed synthetic population formed by three introduced strains. The data included 107 398 progeny from 394 sires and 654 dams in six generations with a nested mating structure. The variance components and genetic parameters were estimated using a generalized linear mixed model with the probit link function. Available heritabilities in survival from the generation G₃ to G₅ ranged from 0.007 ± 0.020 to 0.066 ± 0.044 (P > 0.05) using a model that included the common environmental effect (c). Across generations, low heritability (0.016 ± 0.012, P > 0.05) was estimated using the model with inclusion of the c effect. There were statistically significant differences in the heritability estimates between different ponds for most generations. Moreover, the genetic correlation of survival between ponds over six generations varied from low to high (?0.0007 ± 0.17 to 0.80 ± 0.069) and was significantly different from unity. There were low correlation coefficients (?0.039 ± 0.096 to 0.342 ± 0.081) between body weight estimated breeding value (EBV) and survival EBV of families in different generations. The low heritabilities for survival are most likely caused by low genetic variation in the founder populations and reduced genetic variation because of consecutive selection.     

Estimating the heritability for growth-related traits in the pearl oyster,Pinctada fucata martensii (Dunker)

Twelve paternal half-sib families (or 36 full-sib families) of the pearl oyster, Pinctada fucata martensii (Dunker), were produced according to the requirements of hierarchical genetic mating design. A total of 4320 individuals, aged 15 months, were measured for seven growth-related traits. Predicated upon the additive-dominance genetic analysis model, varying genetic variance components and then heritabilities of the growth-related traits of interest were estimated using analysis of variance. Results showed that seven growth-related traits had larger additive genetic variances (P<0.05); the dominance genetic variance of shell weight (SW) was smaller (P>0.05), the dominance genetic variances of other six traits were all larger (P<0.05). Narrow- and broad-sense heritabilities for the seven traits were, respectively, 0.64 ± 0.10 and 0.78 ± 0.12 for shell length, 0.49 ± 0.06 and 0.63 ± 0.09 for shell height, 0.38 ± 0.14 and 0.54 ± 0.16 for shell breadth, 0.41 ± 0.17 and 0.56 ± 0.11 for hinge length, 0.53 ± 0.11 and 0.68 ± 0.08 for body weight, 0.35 ± 0.07 and 0.55 ± 0.08 for tissue weight and 0.67 ± 0.10 and 0.75 ± 0.16 for SW. All heritability estimates were statistically significant (P<0.05). According to these results, the mass selection procedure is suggested for the breeding of P. martensii.     

罗氏沼虾养殖群体表型性状间的相关性及类群差异分析

为研究罗氏沼虾(Macrobrachium rosenbergii)养殖群体表型性状间的相互关系及不同类群间的性状差异,本研究对人工养殖的罗氏沼虾雌、雄及“老头虾”3个类群共490个个体的体重、体长、全长等12个表型性状进行了相关分析、形态性状对体重影响的通径分析等。结果表明, 3个类群除上、下额刺数2个可数性状外,其他9个可量形态性状与体重都呈极显著的正相关(P<0.01);影响体重的关键形态性状在3个类群中各不相同,但体长、头胸甲长、第二步足长在3个类群中均是影响体重的关键指标;分别建立了各类群体重与关键形态性状的多元回归方程。聚类分析和主成分分析结果表明,雌、雄2个类群表型上更为相似,“老头虾”与雌性个体的差异最大。腹部轮廓特征(包括腹长、腹宽、腹高)、全长、体长及第二步足长对3个类群的差异贡献较大。雌性个体腹部发达,“老头虾”则第二步足尤为发达。本研究结果可为罗氏沼虾的选择育种、基础生物学及行业标准的制定提供数据资料。     

Genetic divergence in Indian populations of M. rosenbergii using microsatellite markers

Macrobrachium rosenbergii, known as the giant freshwater prawn or Malaysian prawn, is the sixth largest aquaculture species in Asia. Knowledge of genetic diversity of M. rosenbergii is important to support management and conservation programmes, which will subsequently help in sustainable production of this economically important species. This study aimed to analyse the genetic diversity and population structure of five M. rosenbergii populations using 11 microsatellite loci. In analysing 240 samples, the number of alleles, observed heterozygosity (H_O) and expected heterozygosity (H_E) ranged from 3 to 20, from 0.250 to 0.978 and from 0.556 to 0.944 respectively. The five stocks of M. rosenbergii displayed high level of genetic diversity. Both the F_ST and amova analyses showed that there was significant genetic differentiation among all populations. The UPGMA dendrogram based on Nei's genetic distance matrix revealed that the Narmada and Mahi populations were in one cluster and Mahanadi and Subarnarekha populations in another single major branch, whereas the Kerala population clearly showed a separate cluster. This information on genetic variation will be useful for genetic improvement and conservation of Indian populations of giant freshwater prawn M. rosenbergii.     

Effects of the individual rearing stage on the growth traits of candidate giant freshwater prawns (Macrobrachium rosenbergii)

In most breeding programs of Macrobrachium rosenbergii, the candidate parents will go through an overwintering period of individual rearing stage (IRS) after the communal rearing stage (CRS). To study whether environmental differences affect the growth traits of candidate parents, the heritability (h²) and genotype by environment (G?×?E) interaction were estimated for harvest body weight (HBW) and average daily weight gain (ADG) in CRS and IRS. The HBWs and ADGs of 3,242 candidate parents from 111 families were recorded at the two stages. The h² estimated for the HBW and ADG in the CRS were medium to high (0.333?±?0.205 and 0.284?±?0.173) and decreased to a medium magnitude in the IRS (0.158?±?0.032 and 0.171?±?0.034). The heritabilities for HBW and ADG were higher in females than that of males in CRS, but the situation reversed in IRS. No significant differences were found in heritabilities of HBW and ADG between males and females in the two stages (P?>?0.05). For HBW, the genetic correlations between the two stages were 0.32?±?0.18 for all candidates, 0.98?±?0.021 for females and 0.073?±?0.24 for males. For ADG, the genetic correlations between the two stages were???0.37?±?0.16 for all candidates,???0.079?±?0.20 for females and???0.51?±?0.18 for males. The IRS had an obvious influence on the growth traits of candidates, especially for males. To select parents more accurately, growth in the IRS should also be taken into consideration in parent selection and mating schemes in breeding programs of M. rosenbergii.

     

Estimating reproductive success of brooders and heritability of growth traits in Asian sea bass (Lates calcarifer) using microsatellites

Asian sea bass (Lates calcarifer) is one of the most important marine food fish species in Asia and Australia. To estimate the reproductive success of broodstock and heritabilities of growth‐related traits, two independent full‐factorial crosses (PI and PII) were created by crossing 10 males and 10 females. At 90 days post hatch (dph), the body weight (BW) and total length (TL) of 804 individuals from PI and 900 individuals from PII were measured and tissues samples of each fish were collected. Parents and offspring were genotyped with nine polymorphic microsatellites. Out of 1704 offspring from the two crosses, 98.7% were assigned to their parents. In PI, 19 of 20 parents produced offspring, while in PII, only five parents contributed to offspring. Low contribution of parents to offspring could lead to reduced genetic variation in the next generation. Heritabilities for growth‐related traits were estimated using the pedigrees reconstructed using microsatellite genotypes. The estimates of heritability were 0.22±0.16 and 0.25±0.18 for BW, 0.31±0.14 and 0.24±0.21 for TL and 0.22±0.22 and 0.15±0.09 for Fulton's condition factor in the two crosses respectively. Body weights at 90 dph and at harvest (289 dph) were significantly correlated (r=0.601, P<0.01). Therefore, growth‐related traits could be improved by exploiting additive genetic effects through selective breeding, and broodstock candidates could be selected early in the production cycle.     

Effect of cold shock and hormone on growth and male morphotypes of freshwater prawn,Macrobrachium rosenbergii (de Man)

A study was carried out to determine the effects of cold shock and 17α‐methyl testosterone hormone on growth in male morphotypes of giant freshwater prawn Macrobrachium rosenbergii. Juvenile males were exposed at 18 ± 0.25°C for 24 h with normal feed and cultured at 27 ± 0.7°C for 70 days as well as administrated feed with hormone separately at 400 mg kg^?1 feed for the first 30 days of culture period (70 days). The growth (Mean ± SD) of male juveniles at harvest was closely homogenous in the cold shock (CLS) treated group; while it was heterogeneous in hormone‐treated (MH) and control (CO) groups. Although total body weight of blue claw (BC) males was not significantly different in the controls and the treatments, the 2nd pereiopods (claw) weight and length of the BC was significantly lower in CLS (0.52 ± 0.05 g, 10.02 ± 0.65 cm) than that in the CO (0.71 ± 0.16 g, 12.53 ± 0.57 cm) and MH (0.75 ± 0.08 g, 12.85 ± 1.18 cm) treatments. Survival of prawns was similar in treatments. The morphotypes of male prawn were significantly different with 59% of BC males with small‐sized claws in CLS and, 45% and 30% of BC males with large‐sized claws in MH and CO respectively. Cold shock adversely affected male morphotypes of the prawn so that numbers of BC males with small‐sized claw was the highest in CLS tank. However, the CLS treatment resulted in more uniform marketable prawns and suggested a high production of BC males in an all‐male culture system.     

Heritabilities and genetic correlations of size traits at harvest size in sexually dimorphic Pacific white shrimp (Litopenaeus vannamei) grown in two environments

A captive population of Pacific white shrimp (Penaeus vannamei) replicated in two environments was evaluated for genetic variability and covariability of size traits. A total of 37 full‐sib families, each with an average of 16–20 individuals within family, were used for the analysis. There was no family by environment interaction for any of the traits. However, both fixed effects, sex and environment, were significant. The shrimp grown in environment ‘B’ (Sinaloa) grew larger and heavier than those grown in environment ‘A’ (La Paz), possibly because of the higher temperatures and lower densities in the first one during grow‐out. The females were significantly larger than the males for all traits, except for abdominal (tail) length and weight. The heritabilities, estimated through MTDFREML (multiple‐trait derivative‐free restricted maximum likelihood) after introducing environment and sex as fixed effects, were total length 0.22±0.07, abdominal length 0.23±0.07, cephalothorax length 0.17±0.06, total weight 0.17±0.06, abdominal weight 0.18±0.06, cephalothorax weight 0.15±0.06, and width of the first abdominal segment (0.14±0.05). Genetic correlations (r_g) were high between the length and weight (total and abdominal), but lower for cephalothorax weight or length with the other traits. The width of the first abdominal segment correlations with other traits was intermediate.     

Virulence assay of rhizoid and non‐rhizoid morphotypes of Flavobacterium columnare in red tilapia,Oreochromis sp., fry

Numerous isolates of Flavobacterium columnare were previously recovered from red tilapia, Oreochromis sp., exhibiting columnaris‐like disease in Thai farms, and the phenotypic and genetic characteristics were described. The objective of this study was to determine the virulence of two morphotypes (rhizoid and non‐rhizoid colonies) of F. columnare and to determine their ability to adhere to and persist in red tilapia fry. The results showed that the typical rhizoid isolate (CUVET1214) was a highly virulent isolate and caused 100% mortality within 24 h following bath challenge of red tilapia with three different doses. The non‐rhizoid isolate (CUVET1201) was avirulent to red tilapia fry. Both morphotypes adhered to and persisted in tilapia similarly at 0.5 and 6 h post‐challenge as determined by whole fish bacterial loads. At 24 and 48 h post‐challenge, fry challenged with the rhizoid morphotype exhibited significantly higher bacterial loads than the non‐rhizoid morphotype. The results suggested that an inability of the non‐rhizoid morphotype to persist in tilapia fry may explain lack of virulence.     

Histopathological changes in giant freshwater prawn Macrobrachium rosenbergii (de Man 1879) fed with probiotic Bacillus licheniformis upon challenge with Vibrio alginolyticus

The effect of dietary supplementation of probiotic bacterium Bacillus licheniformis on the histopathological changes in Macrobrachium rosenbergii juveniles (4.0 ± 0.02 g) challenged with known pathogenic strain of Vibrio alginolyticus are reported. Two isocaloric basal diets supplemented with probiotic bacteria B. licheniformis (1.0 × 10⁹ cfu/g feed) and other without probiotic supplementation were fed to the M. rosenbergii juveniles for 45 days. The histological observations revealed no significant changes in the hepatopancreas and gut tissues of both the experimental and the control groups which indicate that the present bacterium is a safe candidate probiont for the host. Prawns were challenged with V. alginolyticus after 45 days of feeding with probiotic diet. The histopathological studies of the hepatopancreas revealed that M. rosenbergii fed with probiotic‐supplemented diet showed less changes as compared to the prawns fed with control diet on second and fourth day of post‐experimental challenge with V. alginolyticus. Histopathological observations revealed that the gills of the prawns fed with control diet were severely affected in comparison to the prawns fed with probiotic‐supplemented diet after challenging with V. alginolyticus. Results from this study revealed the improved protection by dietary incorporation of B. licheniformis in reducing the histopathological manifestations due to V. alginolyticus infection in freshwater prawn.     

Genetic parameter estimates for growth‐related traits of blunt snout bream (Megalobrama amblycephala) using microsatellite‐based pedigree

Blunt snout bream (Megalobrama amblycephala) is an herbivorous freshwater fish species native to China and has been recognized as a main aquaculture species in the Chinese freshwater polyculture system with high economic value. The genetic parameter estimates for important economic traits are needed for its selective breeding. The aim of this study was to estimate the heritabilities for its growth‐related traits and explore the genetic and phenotypic correlations among the traits using microsatellite‐based pedigree approach. Offspring from a mass‐spawning of 92 broodstocks (42 sires and 50 dams) were reared in a communal pond and nine microsatellites were used to identify the parents of each sampled offspring. Of 749 offspring randomly selected, 708 (94.53%) could be assigned directly to a single parental pair, which was used for heritability estimates. Data were analysed using the method of restricted maximum likelihood (REML) using animal model and the results showed that the heritabilities of body weight, body length, total length and body height were 0.65, 0.53, 0.53 and 0.50, respectively. High genetic correlations were found among these four traits. According to these results, selection for growth seems to be feasible in M. amblycephala and the other growth traits will be heightened accordingly with the selection based on body length.     

Growth and immune response of giant freshwater prawn Macrobrachium rosenbergii (De Man) postlarvae fed diets containing Chlorella vulgaris (Beijerinck)

A 50‐day growth trial was conducted to evaluate the efficacy of Chlorella vulgaris (Beijerinck) as an ingredient in the diets of giant freshwater prawn Macrobrachium rosenbergii (De Man) postlarvae (PL30). Immune response (total haemocyte count and prophenoloxidase activity) was also assessed by subjecting postlarvae to a challenge test against Aeromonas hydrophila (Chester) for 14 days. Iso‐nitrogenous and iso‐lipidic test diets were prepared using a fishmeal‐based‐positive control diet (D0) and four basal diets with inclusion levels of 2% (D2), 4% (D4), 6% (D6) and 8% (D8) C. vulgaris. Postlarvae of M. rosenbergii were randomly stocked (mean initial body weight of 0.19 ± 0.02 g) in 30‐L tanks in three replicates per dietary treatment for evaluation of growth performance. Another set of postlarvae (mean initial body weight of 1.25 ± 0.02 g) was randomly distributed in 95‐L tanks in three replicates per dietary treatment for the assessment of immune response. Results showed that specific growth rate was significantly higher (P < 0.05) in postlarvae fed D4 and D6. Variations in values for carcass protein, lipid, moisture and ash were also evident. Postlarvae fed diets with Chlorella showed increased prophenol oxidase activity and total haemocyte counts. Moreover, survival rate after challenge with A. hydrophila was significantly increased (P < 0.05). Inclusion of C. vulgaris in diets enhanced immune response and resistance of M. rosenbergii postlarvae against A. hydrophila infection.     

Genetic parameters and response to selection for harvest body weight of pacific white shrimp,Litopenaeus vannamei

Genetic parameters and response to selection were estimated for the harvest body weight of Litopenaeus vannamei. The data consisted of 24 072 progeny from 178 sires and 171 dams in two generations (G₀ and G₁) with a nested mating structure. All families were randomly divided into two groups and then cultured in two farms at different locations (Huanghua and Qingdao). The heritability estimates from G₀ and G₁ were 0.278 ± 0.136 and 0.423 ± 0.065 respectively. Over two generations, the heritability estimate was 0.335 ± 0.087, and the common environmental effect was 0.084 ± 0.031. A bivariate animal model was used to estimate variance and covariance components, whereby the body weight in the two farms was treated as a genetically distinct trait. Genetic correlation was close to unity (0.943 ± 0.066), indicating that a genotype by environmental interaction for harvest body weight was small. The response to selection in harvest body weight was estimated using two methods (the realized and predicted responses). The realized response was estimated from the difference in the least squares means of body weight for the selection and control populations. The predicted response was obtained from the difference in the mean estimated breeding values between generations. The realized response was 2.30%, while the predicted responses were 2.00% and 1.37% for within‐ and across‐generation datasets using two sets of genetic parameters respectively. The results would provide crucial information in pacific white shrimp breeding programs in China.     

Estimates of genetic parameters for growth-related traits of the red swamp crayfish,Procambarus clarkii

In this study, technologies of family construction and grow-out culture in the same pond were studied for red swamp crayfish. A total of 77, 110 and 78 families were constructed in 2011, 2012 and 2013, respectively. Heritability, genetic and phenotypic correlations were estimated for body weight, body length and carapace length through performance testing in progeny of 2012 at 5 and 10 months of age, resulting from a nested mating design. At 5 months of age, none of the estimated heritabilities were significant (0) based on sire components (h _s ² ) for these traits, the genotypic correlations, either; only the phenotypic correlations were significant (0.8561–0.9420). At 10 months of age, the estimated heritabilities (h _s ² ) were low for the three traits (0.1429–0.1632); the phenotypic and genetic correlations were significant, 0.8148–0.9052 and 0.9981–0.9993, respectively. It was concluded that genetic improvement through selective breeding conducted on red swamp crayfish might be feasible and would be an efficient method to obtain a positive response to selection for the 10-month-old red swamp crayfish.