Chaotic or deterministic development of nematode populations in pine forest humus incubated in the laboratory

Humus material from an old stand of Scots pine and from an open area clearcut 13–15 years ago was incubated in the laboratory. The incubations were started in different years and the differences in nematode faunal development between the years were compared with site characteristics. In all incubations there was an increase in total nematode abundance. The total number and diversity of nematodes were higher in humus from the forest than from the clearing. The results indicated that biotic control mechanisms were much weaker in the humus from the clearcut area, where a strong dominance of Acrobeloides nanus occurred in most incubations. The differences in faunal development between years were rather large. A certain pattern of unpredictability indicated that the nematode fauna was a rather labile component of the community of soil organisms in a pine forest soil.     

Urbanization alters the functional composition,but not taxonomic diversity,of the soil nematode community

We evaluated the response of riparian forest soil nematode community structure to the physico-chemical environment associated with urban land use. Soils were sampled seasonally between December 2000 and October 2002 along an urban—rural transect in Asheville, North Carolina. We characterized the taxonomic (to genus) and functional composition (trophic groups) of the nematode community of forest soils, as well as several nematode ecological indicators (maturity index, channel index, weighted faunal index). The diversity of nematode genera was not affected by urban land use. However, there tended to be functional differences in the nematode communities along the land use gradient. The urban soils tended to have lower abundances of predatory and omnivorous nematodes. Differences in channel index scores indicated that there was less fungal dominance in the soil food webs of the urban soils. Our results indicate that the functional composition of the soil food web is an important component of soil biodiversity that can be affected by land use practices. This study was conducted in a relatively small city; hence the influence of pollutants on the soil environment was not as great as in larger cities. Correspondingly, the impact on the soil nematode community was not very severe. The utilization of the nematode community assemblage as an indicator of soil conditions should be further explored in urban places of differing magnitudes of environmental effects.     

Strong impacts of belowground tree inputs on soil nematode trophic composition

Trees have a key role in determining the composition of soil biota via both above and belowground resource-based mechanisms, and by altering abiotic conditions. We conducted an outdoor mesocosm experiment to investigate the relative impact of above and belowground tree inputs on soil nematode trophic composition, and examine whether tree-driven impacts differed between contrasting species (birch and pine). For both species, we created a factorial design of litter addition and root presence treatments. The litter addition treatment was equivalent to natural levels of litterfall; tree saplings were planted in mesocosms for the root presence treatment and an unplanted control treatment was established that had no litter or root inputs. Litter addition had a limited impact on soil nematode community composition: it primarily decreased omnivore and predatory nematode abundance in birch but had few other effects on the nematode community. By contrast, root presence markedly altered nematode community composition through changes in a range of trophic groups. For both birch and pine, there were significant increases in total, fungivore and predatory nematode abundance in root presence treatments, and furthermore, total and fungivore abundances were positively related to root biomass. Root presence of these contrasting tree species also had a distinctive impact on some specific nematode trophic groups; pine roots promoted bacterivore abundance while birch roots promoted root-hair feeding nematode abundance. These findings suggest strong bottom-up effects of belowground tree inputs, and indicate that particular components of the nematode community may be affected differently by resource quantity and quality. Consequently, we suggest that, in the short-term, belowground rather than aboveground tree inputs have a strong impact on soil food web structure and complexity.     

Soil nematode communities are ecologically more mature beneath late- than early-successional stage biological soil crusts

Biological soil crusts are key mediators of carbon and nitrogen inputs for arid land soils and often represent a dominant portion of the soil surface cover in arid lands. Free-living soil nematode communities reflect their environment and have been used as biological indicators of soil condition. In this study, we test the hypothesis that nematode communities are successionally more mature beneath well-developed, late-successional stage crusts than immature, early-successional stage crusts. We identified and enumerated nematodes by genus from beneath early- and late-stage crusts from both the Colorado Plateau, Utah (cool, winter rain desert) and Chihuahuan Desert, New Mexico (hot, summer rain desert) at 0–10 and 10–30 cm depths. As hypothesized, nematode abundance, richness, diversity, and successional maturity were greater beneath well-developed crusts than immature crusts. The mechanism of this aboveground–belowground link between biological soil crusts and nematode community composition is likely the increased food, habitat, nutrient inputs, moisture retention, and/or environmental stability provided by late-successional crusts. Canonical correspondence analysis of nematode genera demonstrated that nematode community composition differed greatly between geographic locations that contrast in temperature, precipitation, and soil texture. We found unique assemblages of genera among combinations of location and crust type that reveal a gap in scientific knowledge regarding empirically derived characterization of dominant nematode genera in deserts soils and their functional role in a crust-associated food web.     

Nematodes associated with saffron II: Bioindication for soil health assessment and impact of agricultural practices

BackgroundSaffron cultivation is vital in the Taliouine-Taznakht regions, but the influence of agricultural practices on soil nematode communities, critical for soil health and plant productivity, is not well understood.This study characterizes nematode communities in saffron fields of the Taliouine-Taznakht regions, assessing the impact of various agricultural practices on these communities, with a focus on their diversity, functional roles, and potential as bio-indicators of soil health.A total of 163 soil samples were collected from saffron fields in Taliouine-Taznakht. Nematode communities were identified, quantified, and their functional diversity analyzed. Principal Component Analysis (PCA) was used to visualize relationships between nematode communities and sampling sites. Co-inertia analysis assessed the impact of agricultural practices on nematode diversity.The nematode communities were diverse and varied across regions. PCA identified unique nematode community compositions in different saffron fields. Omnivorous nematodes were strongly linked with Taouyalte (TA), and herbivorous ones were prevalent at Agadir Melloul (AM) and Sidi Hssaine (SH). Modern crop types, high-frequency irrigation, and alfalfa-barley rotation were positively correlated with predator nematode abundance, potentially controlling plant parasitic nematodes and encouraging nutrient cycling. Conversely, monocropping, traditional irrigation, and long plantation age correlated with reduced structure and maturity indices, suggesting a less stable ecosystem.This study unveils the intricate relationships between nematode communities in Taliouine-Taznakht saffron fields and agricultural practices. Findings indicate that specific practices, such as crop rotation and modern irrigation techniques, can foster beneficial nematode groups that improve soil health and potentially regulate harmful plant parasitic nematodes. This knowledge is crucial for crafting sustainable and effective saffron cultivation strategies.     

Physiological, biochemical and molecular responses of the soil microbial community after afforestation of pastures with Pinus radiata

Afforestation and deforestation are key land-use changes across the world, and are considered to be dominant factors controlling ecosystem functioning and biodiversity. However, the responses of soil microbial communities to these land-use changes are not well understood. Because changes in soil microbial abundance and community structure have consequences for nutrient cycling, C-sequestration and long-term sustainability, we investigated impacts of land-use change, age of stand and soil physico-chemical properties on fungal and bacterial communities and their metabolic activities. This study was carried out at four sites in two geographical locations that were afforested on long-established pastures with Pinus radiata D. Don (pine). Two of the sites were on volcanic soils and two on non-volcanic soils and stand age ranged from 5 to 20 y. Microbial communities were analysed by biochemical (phospho-lipid fatty acids; PLFA) and molecular (multiplex-terminal restriction fragment length polymorphism; M-TRFLP) approaches. Both site and stand age influenced microbial properties, with changes being least detectable in the 5-y-old stand. Land use was a key factor influencing soil metabolic activities as measured by physiological profiling using MicroResp. Pasture soils had higher microbial biomass (P < 0.001), and metabolic activities (P < 0.001), and basal respiration rates were up to 2.8-times higher than in the pine soils. Microbial abundance analysis by PLFA showed that the fungal to bacterial ratio was higher in the pine soils (P < 0.01). Community analysis suggested that soil bacterial communities were more responsive to site (principal component 1; P < 0.001) than to land use (principal component 5; P < 0.001). In contrast, the fungal community was more affected by land-use change (principal component 1; P < 0.001) than by site, although site still had some influence on fungal community structure (principal component 2; P < 0.001). Redundancy analysis also suggested that bacterial and fungal communities responded differently to various soil abiotic properties, land-use change and location of sites. Overall, our results indicate that the change in land use from pasture to P. radiata stands had a direct impact on soil fungal communities but an indirect effect, through its effects on soil abiotic properties, on bacterial communities. Most of the changes in bacterial communities could be explained by altered soil physico-chemical properties associated with afforestation of pastures.     

土壤线虫群落对过量施用农用化学品的响应

为研究施用过量的农用化学品对土壤线虫群落组成及多样性的影响,采用定点试验的方法,在哈尔滨市呼兰区选择典型农田生态系统进行试验,对比研究土壤线虫群落对施用过量的氮肥、磷肥、钾肥、除草剂及杀虫剂的响应。在试验田中共鉴定出土壤线虫27科45属,其中Cephalobus和Aphelenchus为优势属。施用不同浓度的各类农用化学品对土壤线虫群落组成、多样性均产生一定影响。线虫总数及食细菌线虫、食真菌线虫、植物寄生线虫数量在不同处理间均存在显著差异(P<0.05);其中,植物寄生线虫的相对丰度随化肥施用量的升高呈增加趋势。从土壤线虫的生态指数来看,除PPI(植物寄生线虫成熟指数)外,其他生态指数[MI(成熟度指数)、F/B(食真菌线虫与食细菌线虫数量比值)、Evenness(均匀度指数)、SR(丰富度指数)、H’(多样性指数)]在施用不同农用化学品处理之间也存在显著差异,并且,MI随着施用钾肥、氮肥浓度的增加而降低。土壤线虫可以作为揭示施用农用化学品过程中土壤质量变化的生物学指标,其群落及多样性的变化表明土壤线虫群落对农用化学品的过量施用产生了响应,过量施用农用化学品会增加土壤生态系统的干扰,对土壤环境造成威胁。     

Original vegetation type affects soil nematode communities

The effect of land use changes on the composition of nematode communities has been well documented, however, the applicability of such studies limited to areas with relatively uniform soil and environmental conditions. To determine whether the historical difference in vegetation types affects soil nematode communities during the land use change processes, we carried out a study along two transects where contrasting natural vegetation types (grass versus shrub) were replaced by tea monocultures. Soil nematode communities were compared between two transects at three chronosequence stages: natural vegetations, 3–7 years old tea plantations. Nematode abundance, generic richness, diversity, and proportions of bacterivores and fungivores were higher at each stage of GT transect (from grassland to tea plantation) than at the equivalent stage of ST transect (from shrubland to tea plantation), whereas lower values of maturity index and nematode channel ratio occurred at each stage of GT transect relative to ST transect. MDS ordination analyses, SIMPER analyses and β_w indices indicated that the difference in nematode community structure was greatest between the two 3-year-old tea plantations, although the greatest difference in environmental conditions was observed between two original vegetation habitats. This suggested that the original vegetation types may affect the following nematode community development; however, the effects can decrease over time. Different trophic groups responded to land use in different ways along the vegetational development. This supports the viewpoint that the addition of a common resource can evoke disparate responses from individual food-web components.     

Changes in soil nematode communities under the impact of fertilizers

Changes taking place in the communities of soil nematodes of an artificially sown meadow under the impact of annually applied mineral fertilizers have been studied in a field experiment for nine years. It is shown that changes in the species composition, trophic structure, and numbers of nematodes from different genera depend on the fertilizer applied and on the competitiveness of the plant species grown. The spectra of nematode genera sensitive to the complete mineral fertilizer (NPK) and to the particular nutrients have been identified with the use of a number of parameters, including the maturity index of nematode communities, the biotope preferences of the particular nematode genera, and the general pattern of nematode habitats. The results obtained in this study can be used to assess the effect of mineral fertilizers on the soil fauna and to suggest optimum application rates of mineral fertilizers ensuring the sustainable development of meadow herbs. The use of the data on the trophic structure of nematode communities for predicting the ways of organic matter decomposition in the soil is discussed.     

Soil nematode fauna of afforested mine sites: genera distribution,trophic structure and functional guilds

In an afforested coal mining site at Berzdorf, Germany, the soil nematode community was investigated on the basis of genera distribution, trophic structure, and functional guilds. To assess food web complexity and nutritional status of afforested mine soils, the “weighted faunal analysis” was applied and found to be a useful diagnostic tool to describe the poorly developed, basal or matured food web characters of the Berzdorf mine soils. The tree species used in afforestation was a crucial factor. A comparison between nine mine soils of different age (4–46 years) and afforestation (poplar, alder, pine, mixed deciduous, mixed coniferous) showed particularly poorly structured food webs in poplar afforestations, whilst alder and mixed deciduous sites presented more favourable conditions in terms of soil succession and food web maturity. The results revealed no continuous increase in the complexity of food web interactions from younger successional stages to older stages. However, it was demonstrated that food web development at Berzdorf followed distinct shifts in soil primary succession. Correspondences of nematode community data and environmental parameters are discussed.     

Size spectra of soil nematode assemblages under different land use types

Although the slopes of size spectra (plots of abundance on organism size) have been widely used to assess aquatic and terrestrial communities, size spectra have not been used to assess soil nematode communities. Two forms of size spectra (one based on the average biomass of nematode genera and another based on the average biomass of nematode size classes were used to assess the soil nematode communities in managed forage land and cropland, and in naturally developed grass-shrubland and secondary forests in a karst peak-cluster depression area. R² values were larger for size spectra based on nematode size classes than on genera. The slopes of the size spectra for total nematodes were more negative in forage land and cropland than in grass-shrubland and secondary forests, which was consistent with disturbance of the soil nematode community by agricultural management. The results suggest that size spectra analysis is applicable to soil nematodes; they can reveal different land use types and may reveal the degree to which the soil nematodes in particular and the soil community in general have been disturbed. Size spectra may be more useful if based on nematode size classes rather than on genera.     

Timber harvesting alters soil carbon mineralization and microbial community structure in coniferous forests

Timber harvesting influences both above and belowground ecosystem nutrient dynamics. Impact of timber harvesting on soil organic matter (SOM) mineralization and microbial community structure was evaluated in two coniferous forest species, ponderosa pine (Pinus ponderosa) and lodgepole pine (Pinus contorta). Management of ponderosa pine forests, particularly even-aged stand practices, increased the loss of CO₂-C and hence reduced SOM storage potential. Changes in soil microbial community structure were more pronounced in ponderosa pine uneven-aged and heavy harvest stands and in lodgepole pine even-aged stand as compared to their respective unmanaged stands. Harvesting of trees had a negative impact on SOM mineralization and soil microbial community structure in both coniferous forests, potentially reducing coniferous forest C storage potential.     

藏北高寒草甸土壤线虫群落对围封及自由放牧的响应

为了解放牧干扰对藏北高寒草甸的影响,以及连续围封措施对草地的恢复作用,2013—2015年连续3年对那曲县围封、自由放牧天然高寒草甸土壤线虫群落进行取样调查及数据分析。结果表明:围封、放牧样地的线虫个体数量在年际间的变化均较明显,植食性线虫是整个线虫群落个体数量变化的主要贡献者;围封样地的线虫个体密度、多样性指数H′、丰富度指数SR,以及优势度指数λ的年际变化幅度均大于放牧样地;食细菌性线虫个体数量及线虫通路比值(NCR)表明放牧样地的有机质转化效率高于围封样地;成熟度指数(MI)、植物寄生线虫指数(PPI)分析表明,所研究区域经5年围封,高寒草甸生态系统稳定性没有明显的提高,相反,现有放牧强度维持或者增加了线虫群落的物种多样性,利于物种共存和草地生态系统稳定性的维持。     

Physiological and DNA fingerprinting of the bacterial community of Meloidogyne fallax egg masses

Bacterial communities associated with the plant-parasitic nematode Meloidogyne fallax egg masses were compared with those present in the rhizoplane. Two agricultural soils with different nematode population dynamics were used in a glasshouse study, with either potato or tomato as host plant for the nematode. DNA fingerprints and bacterial community level physiological profiles (CLPP) were studied using PCR-DGGE of 16S rRNA genes and Biolog Eco MicroPlates. CLPP and DNA fingerprinting both showed differences between egg mass and rhizoplane bacterial communities. PCR-DGGE showed some bands specific to the egg mass samples. These bands were present in egg masses from both soils. This study shows that egg masses of M. fallax have a distinct bacterial community from that of the adjacent rhizoplane. Soil and host plant factors interactively influence the bacterial egg mass community. Differences in nematode population dynamics between the sample sites cannot be clearly related to the observed differences in the egg mass microbial communities.     

大豆连作土壤线虫群落结构的影响

【目的】由根系活动引起的根际微生态系统的改变,特别是病原生物数量的增加是导致作物产生连作障碍的主要因素。其中,植生性病原线虫的危害是大豆连作障碍产生的重要原因之一。由于植生性病原线虫的存在往往受到其它营养类型线虫的影响,因而从线虫群落结构进行分析,不仅可以更好地反映不同营养类型的线虫之间的相互关系,而且能全面了解土壤的健康状况。本文利用末端限制性片段长度多态性分析(T-RFLP)和实时荧光定量PCR(q PCR)等分子生物学的方法,比较短期连作和长期连作线虫群落的差异,揭示长期连作大豆土壤线虫群落的变化规律,理解线虫群落与植物健康的关系,阐明线虫群落的变化在大豆连作障碍中的作用。【方法】首先,基于16sr DNA的T-RFLP指纹图谱,分析土壤中线虫的物种丰富度和不同大小的末端限制性片段(T-RF)的相对丰度。然后,通过构建克隆文库和系统发育树,鉴定T-RF片段对应的线虫种类。最后,利用q PCR,采用绝对定量的方法确定线虫群落的大小。【结果】线虫的物种丰富度随着连作年限的增加呈逐渐降低的趋势。第1年物种丰富度最高,第3年的丰富度显著低于第1年,之后逐渐降低,9年之后保持不变。大豆根际土中共检测到16个TRF,且大多数T-RF能从克隆文库中鉴定。其中,食细菌线虫(Acrobeloides)是最为丰富的线虫种类。在连作2~3年后,植物寄生线虫相对丰度增加,而在连作后期,植物寄生线虫相对丰度减少。非度量多维尺度分析(NMDS)示,第1年线虫群落与其余年限分开,而第2和第3年聚集较近,而连作9、11和13年后聚集较近。另外,线虫群落结构与p H、土壤有机质(SOM)、速效磷(AP)、细菌数量和真菌数量相关。线虫群落总丰度呈先增后降的趋势,最高值出现在第6年。线虫的基因拷贝数与土壤NH+4和染料木因浓度呈显著正相关,而与NO-3和细菌的基因拷贝数呈显著负相关。【结论】大豆根际土壤中,线虫群落丰度在连作第2~3年下降最为明显,到第6~9年有一定的恢复,但不能完全修复。大豆种植为第一,基线虫属(556 bp)丰度最高。土壤功能正常,连作第2~3年后,摄食性线虫(555 bp、558 bp、560 bp等)丰度增加,线虫浸染机会增加。     

Effects of fungivorous and predatory arthropods on nematodes and tardigrades in microcosms with coniferous forest soil

Effects of fungivorous and predatory soil arthropods on free-living nematodes and tardigrades were studied in a factorial microcosm experiment. A stepwise increase in faunal complexity was obtained by adding soil arthropods to defaunated humus samples from an irrigated+fertilized and an untreated stand of Scots pine. The effects were assessed after 103 and 201 days at 15°C and a soil moisture content of 50% water-holding capacity. The study showed that a diverse community of fungivorous arthropods (collembola and oribatid mites), present in numbers similar to those in the field, reduced the abundance of nematodes. A complete community of fungivorous and predatory arthropods (e.g., gamasides, spiders, and cantharid larvae) further strengthened this repressive effect. Certain nematode genera were more affected than others. Tardigrades seemed to be efficient predators on nematodes, but their numbers were, in turn, strongly reduced by predatory arthropods. Because predatory arthropods fed on both nematodes and their tardigrade predators, the impact of arthropod predators on nematode regulation was greater than it appeared to be on the basis of nematode numbers. Humus type also interacted with the other factors. Nematode numbers were initially higher in the untreated humus than in the irrigated+fertilized humus. However, because tardigrade populations increased only in the untreated humus, nematode numbers decreased more in this humus than in the irrigated+fertilized humus. The study demonstrates that nematode abundance can be regulated by a number of types of interacting predators.     

Nematode communities of grazed and ungrazed semi-natural steppe grasslands in Eastern Austria

Soil nematode communities were investigated at eight semi-natural steppe grasslands in the National Park Seewinkel, eastern Austria. Four sites were moderately grazed by horses, cattle and donkeys, four were ungrazed. Nematodes were sampled on four occasions from mineral soil, and their total abundance, diversity of genera, trophic structure and functional guilds were determined. Altogether 58 nematode genera inhabited the grasslands, with Acrobeloides, Anaplectus, Heterocephalobus, Prismatolaimus, Aphelenchoides, Aphelenchus, Tylenchus and Pratylenchus dominating. Mean total abundance at sites was 185–590 individuals per 100 g soil. Diversity indices did not separate communities well, but cluster analysis showed distinct site effects on nematode generic structure. Within feeding groups the relative proportion of bacterial-feeding nematodes was the highest, followed by the fungal- and plant-feeding group. Omnivores and predators occurred in low abundance. The maturity indices and plant parasite indices were characteristic for temperate grasslands, but the abundance of early colonizers (c-p 1 nematodes) was low. A high density of fungal-feeding c-p 2 families (Aphelenchoidae, Aphelenchoididae) resulted in remarkably high channel index values, suggesting that decomposition pathways are driven by fungi. Nematode community indices of all sites pointed towards a structured, non-enriched soil food web. At most sites, grazing showed little or no effect on nematode community parameters, but total abundance was higher at ungrazed areas. Significant differences in the percentage of omnivorous nematodes, the sum of the maturity index, the number of genera and Simpson's index of diversity were found at one long-term grazed pasture, and this site was also separated by multi-dimensional scaling (MDS).     

放牧管理对青藏高原东缘高寒草甸土壤线虫的影响及作用机制

不同强度、季节的放牧是草地生态系统中主要的放牧管理措施,在生物多样性维持以及生态过程发挥中起着重要的作用,然而,关于青藏高原东缘高寒草甸地区放牧对土壤线虫群落的研究甚少。本文调查了放牧（轻度、中度和重度）对植物群落、土壤理化性质和线虫群落的影响。结果表明：植物群落、土壤理化性质和线虫群落受到放牧、时间以及放牧和时间共同作用的影响;食细菌线虫、植物凋落物生物量、根生物量、土壤含水量、土壤有机碳含量在轻度放牧草地内最高（p＜0.05）;杂类草生物量在中度放牧草地内最高;杂食线虫数量在重度放牧地内最低（p＜0.05）。植物群落和土壤特性与土壤线虫群落有明显的相关关系（p＜0.05）。结构方程模型显示食草动物主要通过植物群落影响植食和食细菌线虫,进一步的研究应针对植物群落多样性以及个体特征对线虫群落的影响。     

Exotic plant influences soil nematode communities through litter input

The impact of exotic plant invasions on soil communities and nutrient cycling processes has received an increasing attention in recent years. To test whether the exotic plant invasions affect nematode communities through altering litter quality, we compared mass loss and nematode colonization during the stem litter decomposition of invasive Spartina alterniflora and native Phragmites australis in salt marshes of the Yangtze River estuary, China. Plastic drinking straws were synchronously used as controls. The addition of plant residues was found stimulating the growth of nematodes, particularly bacterial feeders on day 16 after burial. A top-down control of bacterivous nematodes by carnivores existed in nematode succession during the litter decomposition. With higher nitrogen content and lower C:N ratio, stem litter of the invasive S. alterniflora decayed faster and supported more abundant nematodes than the native P. australis. The greater nematode abundance in S. alterniflora was mainly due to two dominant genera of bacterial nematodes, namely Diplolaimelloides and Diplolaimella. Lower values of maturity index and structure index in S. alterniflora than in P. australis litter indicate that a more degraded food web condition resulted from the faster litter decay. A considerable difference in nematode community structures between two litter types only occurred in a certain period of the decomposition (from 8 to 32 days after burial), suggesting that the changes in faunal community structure are time dependent. In summary, this study confirmed the hypothesis that the invasion of S. alterniflora stimulates the growth of bacterial nematodes by producing higher quality of litter than the native P. australis. The results obtained here suggest that the invasion of exotic plant is likely to alter ecosystem functions indirectly through exerting its effect on soil decomposer communities such as nematodes.