Grasses, litter, and their interaction affect microbial biomass and soil enzyme activity

Plant effects on ecosystem processes are mediated through plant-microbial interactions belowground and soil enzyme assays are commonly used to directly relate microbial activity to ecosystem processes. Live plants influence microbial biomass and activity via differences in rhizosphere processes and detrital inputs. I utilized six grass species of varying litter chemistry in a factorial greenhouse experiment to evaluate the relative effect of live plants and detrital inputs on substrate-induced respiration (SIR, a measure of active microbial biomass), basal respiration, dissolved organic carbon (DOC), and the activities of β-glucosidase, β-glucosaminidase, and acid phosphatase. To minimize confounding variables, I used organic-free potting media, held soil moisture constant, and fertilized weekly. SIR and enzyme activities were 2-15 times greater in litter-addition than plant-addition treatments. Combining live plants with litter did not stimulate microbial biomass or activity above that in litter-only treatments, and β-glucosidase activity was significantly lower. Species-specific differences in litter N (%) and plant biomass were related to differences in β-glucosaminidase and acid phosphatase activity, respectively, but had no apparent effect on β-glucosidase, SIR, or basal respiration. DOC was negatively related to litter C:N, and positively related to plant biomass. Species identity and living plants were not as important as litter additions in stimulating microbial activity, suggesting that plant effects on soil enzymatic activity were driven primarily by detrital inputs, although the strength of litter effects may be moderated by the effect of growing plants.     

Above- and belowground carbon inputs affect seasonal variations of soil microbial biomass in a subtropical monsoon forest of southwest China

Soil microbial activity drives carbon and nutrient cycling in terrestrial ecosystems. Soil microbial biomass is commonly limited by environmental factors and soil carbon availability. We employed plant litter removal, root trenching and stem-girdling treatments to examine the effects of environmental factors, above- and belowground carbon inputs on soil microbial C in a subtropical monsoon forest in southwest China. During the experimental period from July 2006 through April 2007, 2 years after initiation of the treatments, microbial biomass C in the humus layer did not vary with seasonal changes in soil temperature or water content. Mineral soil microbial C decreased throughout the experimental period and varied with soil temperature and water content. Litter removal reduced mineral soil microbial C by 19.0% in the ungirdled plots, but only 4.0% in girdled plots. Root trenching, stem girdling and their interactions influenced microbial C in humus layer. Neither root trenching nor girdling significantly influenced mineral soil microbial C. Mineral soil microbial C correlated with following-month plant litterfall in control plots, but these correlations were not observed in root-trenching plots or girdling plots. Our results suggest that belowground carbon retranslocated from shoots and present in soil organic matter, rather than aboveground fresh plant litter inputs, determines seasonal fluctuation of mineral soil microbial biomass.     

Long-term impacts of infrequent biosolids applications on chemical and microbial properties of a semi-arid rangeland soil

A plot study was conducted to quantify long-term (>12 years) impacts of a single biosolids application, and short-term impacts (<2 years) of a repeated application, on semi-arid rangeland soil chemical and microbial parameters. In 2003 and 2004, plots which had received 0, 2.5, 5, 10, 21, or 30 Mg biosolids ha⁻¹ once in 1991 (long-term plots), or again in 2002 (short-term plots), were sampled and analyzed for soil chemical parameters, microbial biovolumes, C and N mineralization activities, Biolog EcoPlate substrate utilization potential, and plant productivity and tissue quality. Repeated applications temporarily exacerbated differences in soil chemical properties among treatments, but after 2 years, soil chemistry trends were similar between short-term and long-term plots. Soils which received a repeated application of 21 or 30 Mg biosolids ha⁻¹ had greater bacterial biovolumes and C and N mineralization activities. In long-term plots, mineralization activities were stimulated only at the highest rate. Biosolids-amended soil communities also utilized Biolog substrates more quickly compared to communities from control plots. Plant biomass increased, whereas plant diversity and plant C/N ratio decreased with increasing application rate for both short- and long-term plots. Infrequent biosolids application had positive ecosystem effects in terms of site management objectives, with relatively low extractable metal levels in soil and greater plant biomass and tissue quality despite reduced species richness.     

Nutrient utilization by pine seedlings and soil microbes in oligotrophic pine barrens forest soils subjected to prescribed fire treatment

The purpose of this greenhouse experiment was to examine the short-term effects of competition between pine seedlings and the soil microbial biomass in sandy oligotrophic pine barrens upland forest soils subjected to varying levels of prescribed fire severity. Pine seedling growth performance, microbial biomass nitrogen, extractable soil nutrients and leaching loss from the soil were determined, throughout a single growing season following fire treatment. Replicate soil cores exposed to three levels of fire severity were maintained in a greenhouse with or without a pine seedling. Throughout the following growing season replicate cores from each treatment were harvested and analyzed monthly. The data allowed testing for two main effects: soil fire treatment and tree presence/absence. In no instance was a significant fire treatment X tree presence/absence interaction found. Our results indicate that biological activity strongly influences soil conditions. Reduced microbial activity resulted from the interaction of soil microbial biomass and an individual pine seedling. Increased plant growth performance correlates with reduced soil mineral nitrogen concentration and decreased pH. At the levels of fire severity utilized in this experiment immobilization due to biological uptake and abiotic soil fixation prevented significant leaching losses above that of unburned control samples. In the oligotrophic, pine barrens soils, nitrogen and phosphorus mineralized by fire are largely conserved by biological processes. These results also suggest that plant growth is subject to limitation by phosphorus availability in these soils.     

Effects of biochar,earthworms, and litter addition on soil microbial activity and abundance in a temperate agricultural soil

Biochar application to arable soils could be effective for soil C sequestration and mitigation of greenhouse gas (GHG) emissions. Soil microorganisms and fauna are the major contributors to GHG emissions from soil, but their interactions with biochar are poorly understood. We investigated the effects of biochar and its interaction with earthworms on soil microbial activity, abundance, and community composition in an incubation experiment with an arable soil with and without N-rich litter addition. After 37 days of incubation, biochar significantly reduced CO₂ (up to 43 %) and N₂O (up to 42 %), as well as NH₄ ⁺-N and NO₃ ^?-N concentrations, compared to the control soils. Concurrently, in the treatments with litter, biochar increased microbial biomass and the soil microbial community composition shifted to higher fungal-to-bacterial ratios. Without litter, all microbial groups were positively affected by biochar × earthworm interactions suggesting better living conditions for soil microorganisms in biochar-containing cast aggregates after the earthworm gut passage. However, assimilation of biochar-C by earthworms was negligible, indicating no direct benefit for the earthworms from biochar uptake. Biochar strongly reduced the metabolic quotient qCO₂ and suppressed the degradation of native SOC, resulting in large negative priming effects (up to 68 %). We conclude that the biochar amendment altered microbial activity, abundance, and community composition, inducing a more efficient microbial community with reduced emissions of CO₂ and N₂O. Earthworms affected soil microorganisms only in the presence of biochar, highlighting the need for further research on the interactions of biochar with soil fauna.     

Three-source-partitioning of microbial biomass and of CO2 efflux from soil to evaluate mechanisms of priming effects

We propose and successfully applied a new approach for 3-source-partitioning based on a combination of ¹⁴C labeling with ¹³C natural abundance. By adding ¹⁴C-labeled glucose to soil after C₃ - C₄ vegetation change, we partitioned three C sources in three compartments, namely CO₂, microbial biomass and dissolved organic C (DOC). This enabled us to estimate mechanisms and sources of priming effects (PE).Glucose application at low and high rate (GL: 100 and GH: 1000 μg C g⁻¹, respectively) caused positive PE both short-term (during 1-3 days) and long-term (3-55 days). Despite a 10-fold difference in the amount of substrate added, the PE observed was larger by a factor of only 1.6 at the high versus low rate of glucose. The real and apparent priming effects were distinguished by partitioning of microbial C for glucose-C and SOM-derived C. As the amount of primed CO₂ respired during short-term PE was 40% lower than microbial C, and the contribution of soil C in microbial biomass did not increase, we concluded that such short-term PE was apparent and was mainly caused by accelerated microbial turnover (at GL) and by pool substitution (at GH). Both the amount of primed CO₂-C, which was 1.3-2.1 times larger than microbial C, and the increased contribution of soil C in microbial biomass allowed us to consider the long-term PE as being real. The sole source of real PE (GL treatment) was the “recent” soil organic matter, which is younger than 12-year-old C. The real PE-induced by a glucose amount exceeding microbial biomass (GH) was due to the almost equal contribution of ‘recent’ (<12 years) and ‘old’ (>12 years) C. Thus, the decomposition of old recalcitrant SOM was induced only by an amount of primer exceeding microbial C. We conclude that combining ¹⁴C labeling with ¹³C natural abundance helped disentangle three C sources in CO₂, microbial biomass and DOC and evaluate mechanisms and sources of PE.     

Effects of agricultural biostimulants on soil microbial activity and nitrogen dynamics

We investigated the effects of two commercially available soil biostimulants, designated Z93 and W91, on key microbial and nutrient cycling processes in the soil, by conducting short-term (1 week) and longer-term (8 weeks) soil incubations in the laboratory. In the short-term soil incubations, the two compounds differed in their effects on microbial activity: Z93 was effective over a wide range, stimulating substrate-induced respiration (SIR) and dehydrogenase activity (DHA) at remarkably low concentrations (0.5–500 nl/g soil); W91 stimulated SIR at these concentrations, but also inhibited DHA. In longer-term soil incubations, we amended batches of soil with either finely-ground alfalfa leaves, wheat straw, or added no amendments, to alter patterns of soil nitrogen mineralization and immobilization. We treated these soils with Z93 and W91 at two concentrations (0.005 and 0.5 μl/g soil), and incubated them for up to 8 weeks. These extremely low doses of both Z93 and W91 influenced soil SIR, DHA, and cellulase activity significantly (P<0.05). Both compounds also influenced soil nitrogen dynamics significantly; the extent depending upon the quality of the organic amendments. In the alfalfa-amended soil there was a steep increase in NO₃-N concentration during the incubation due to the rapid mineralization of nitrogen-rich alfalfa material. However, in this soil, both Z93 and W91 reduced NO₃-N concentrations greatly after 56 days. In the straw-amended soil, mineral nitrogen concentrations were very low, probably due to rapid immobilization of nitrogen by microbial biomass. In this soil, treatment with both compounds decreased microbial biomass nitrogen and increased dissolved organic nitrogen (DON), relative to that in the controls. Our results suggest that the two biostimulants can stimulate both the breakdown and mineralization of soil organic materials, perhaps by selectively inhibiting or stimulating particular components of the microbial community, leading to lasting (8 weeks or longer) increases in soil nitrogen availability.     

Conservation tillage: Short- and long-term effects on soil carbon fractions and enzymatic activities under Mediterranean conditions

Short- and long-term field experiments are necessary to provide important information about how soil carbon sequestration is affected by soil tillage system; such systems can also be useful for developing sustainable crop production systems. In this study, we evaluated the short- and long-term effects of conservation tillage (CT) on soil organic carbon fractions and biological properties in a sandy clay loam soil. Both trials consisted of rainfed crop rotation systems (cereal–sunflower–legumes) located in semi-arid SW Spain. In both trials, results were compared to those obtained using traditional tillage (TT). Soil samples were taken in flowering and after harvesting of a pea crop and collected at three depths (0–5, 5–10 and 10–20 cm). The soil organic carbon fractions were measured by the determination of total organic carbon (TOC), active carbon (AC) and water soluble carbon (WSC). Biological status was evaluated by the measurement of soil microbial biomass carbon (MBC) and enzymatic activities [dehydrogenase activity (DHA), o-diphenol oxidase activity (DphOx), and β-glucosidase activity (β-glu)].The contents of AC and MBC in the long-term trial and contents of AC in the short-term trial were higher for CT than TT at 0–5 cm depth for both sampling periods. Furthermore, DHA and β-glucosidase values in the July sampling were higher in the topsoil under conservation management in both trials (short- and long-term). The parameters studied tended to decrease as depth increased for both tillage system (TT and CT) and in both trials with the exception of the DphOx values, which tended to be higher at deeper layers.Values of DHA and β-glu presented high correlation coefficients (r from 0.338 to 0.751, p ≤ 0.01) with AC, WSC and TOC values in the long-term trial. However, there was no correlation between either TOC or MBC and the other parameters in the short-term trial. In general, only stratification ratios of AC were higher in CT than in TT in both trials. The results of this study showed that AC content was the most sensitive and reliable indicator for assessing the impact of different soil management on soil quality in the two experiments (short- and long-term).Conservation management in dryland farming systems improved the quality of soil under our conditions, especially at the surface layers, by enhancing its storage of organic matter and its biological properties, mainly to long-term.     

Cattle trampling alters soil properties and changes soil microbial communities in a Swiss sub-alpine pasture

Stock farming plays an important role in the agriculture of alpine regions although deleterious effects on the soils are most pronounced here. We investigated the effects of cattle trampling on soil physical, chemical and microbial properties in a Swiss sub-alpine pasture. About 10% of the study site was bare of vegetation as a result of repeated cattle trampling and the bulk density of these bare steps was 20% higher than of the soils unaffected by trampling. In the upper 25 cm, soil organic carbon (SOC) concentrations and total SOC stocks were 35% and 20% respectively lower than on the vegetated slope. As compared with the vegetated slope, topsoils of the bare steps featured narrower C:N-ratios and were more enriched in the ¹⁵N isotope, with typical values of deeper soil layers. This indicates that bare soils primarily evolved by erosion and not by a compaction, which might, together with the reduced litter input, explain the lower SOC contents. The abundances of soil microbes, estimated by the concentrations of phospholipid fatty acid (PLFA), were 30% smaller in the bare soils than in the vegetated areas. This depletion was most pronounced for fungi as expressed in the lower concentrations of the fatty acid 18:2ω6.9 (45%) and ergosterol (50%). The lower fungal abundance very likely has negative consequences for the stability of the bare soils, since fungi play an important role in the formation of soil aggregates. In summary, our results show that cattle trampling decreases soil carbon storage and alters soil microbial community structure.     

Burning causes long-term changes in soil organic matter content of a South African grassland

The effects of burning a native grassland on soil organic matter status was investigated on a long-term (50 years) field experiment where different times and frequencies of burning were compared. Significant decreases in organic C were observed only in the surface 0-2 cm layer and only under annual and biennial winter burning and biennial and triennial autumn burning. Burning in spring did not significantly affect organic C content presumably because substantial amounts of litter decomposed and/or were incorporated into the soil by faunal activity prior to burning. Total N content was decreased substantially to a depth of 6 cm by all burning treatments and as a result, the C:N ratio of soil organic matter was widened. In addition, the amount of potentially mineralizable N, as measured by either aerobic incubation or plant N uptake in a pot experiment, was much reduced. Burning also induced a decrease in light fraction and hot water-extractable C in the 0-2 cm layer but an increase in these parameters, and in microbial biomass C and root density, in the 4-10 cm layer. This was attributed to burning causing a decrease in above-ground litter inputs but increased turnover of root material below the surface. Despite the decrease in organic C and total N content with increasing soil depth, potentially mineralizable N showed the opposite trend. This unexpected finding was confirmed at a nearby site under native grassland and contrasted with decreasing potentially mineralizable N with depth which was measured under a fertilized kikuyu grass dairy pasture. The wide C:N ratio of litter from native grassland, in association with the decreasing size and activity of the microbial biomass with depth results in greater N immobilization (thus less net mineralization) occurring in soil samples taken from close to the soil surface.     

Model of apparent and real priming effects: Linking microbial activity with soil organic matter decomposition

The most frequently used models simulating soil organic matter (SOM) dynamics are based on first-order kinetics. These models fail to describe and predict such interactions as priming effects (PEs), which are short-term changes in SOM decomposition induced by easily available C or N sources. We hypothesized that if decomposition rate depends not only on size of the SOM pool, but also on microbial biomass and its activity, then PE can be simulated. A simple model that included these interactions and that consisted of three C pools - SOM, microbial biomass, and easily available C - was developed. The model was parameterized and evaluated using results of ¹²C-CO₂ and ¹⁴C-CO₂ efflux after adding ¹⁴C-labeled glucose to a loamy Haplic Luvisol. Experimentally measured PE, i.e., changes in SOM decomposition induced by glucose, was compared with simulated PE. The best agreement between measured and simulated CO₂ efflux was achieved by considering both the total amount of microbial biomass and its activity. Because it separately described microbial turnover and SOM decomposition, the model successfully simulated apparent and real PE.The proposed PE model was compared with three alternative approaches with similar complexity but lacking interactions between the pools and neglecting the activity of microbial biomass. The comparison showed that proposed new model best described typical PE dynamics in which the first peak of apparent PE lasted for 1 day and the subsequent real PE gradually increased during 60 days. This sequential decomposition scheme of the new model, with immediate microbial consumption only of soluble substrate, was superior to the parallel decomposition scheme with simultaneous microbial consumption of two substrates with different decomposability. Incorporating microbial activity function in the model improved the fit of simulation results with experimental data, by providing the flexibility necessary to properly describe PE dynamics. We conclude that microbial biomass should be considered in models of C and N dynamics in soil not only as a pool but also as an active driver of C and N turnover.     

Effects of litter addition and warming on soil carbon, nutrient pools and microbial communities in a subarctic heath ecosystem

Climatic warming leads to the expansion of deciduous shrubs and trees in the Arctic. This leads to higher leaf litter inputs, which together with warming may alter the rate of carbon and nutrient cycling in the arctic ecosystems. We assessed effects of factorial warming and additional litter on the soil ecosystem of a subarctic heath in a 7-year-long field experiment. Fine root biomass, dissolved organic carbon (DOC) and total C concentration increased in response to warming, which probably was a result of the increased vegetation cover. Litter addition increased the concentration of inorganic P in the uppermost 5 cm soil, while decreasing the pool of total P per unit area of the organic profile and having no significant effects on N concentrations or pools. Microbial biomass C and N were unaffected by the treatments, while the microbial biomass P increased significantly with litter addition. Soil ergosterol concentration was also slightly increased by the added litter in the uppermost soil, although not statistically significantly. According to a principal component analysis of the phospholipid fatty acid profiles, litter addition differed from the other treatments by increasing the relative proportion of biomarkers for Gram-positive bacteria. The combined warming plus litter addition treatment decreased the soil water content in the uppermost 5 cm soil, which was a likely reason for many interactions between the effects of warming and litter addition. The soil organic matter quality of the combined treatment was also clearly different from the control based on a near-infrared reflectance (NIR) spectroscopic analysis, implying that the treatment altered the composition of soil organic matter. However, it appears that the biological processes and the microbial community composition responded more to the soil and litter moisture conditions than to the change in the quality of the organic matter.     

Effects of past and current crop management on soil microbial biomass and activity

Because soil biota is influenced by a number of factors, including land use and management techniques, changing management practices could have significant effects on the soil microbial properties and processes. An experiment was conducted to investigate differences in soil microbiological properties caused by long- and short-term management practices. Intact monolith lysimeters (0.2 m² surface area) were taken from two sites of the same soil type that had been under long-term organic or conventional crop management and were then subjected to the same 2.5-year crop rotation [winter barley (Hordeum vulgare L.), maize (Zea mais L.), lupin (Lupinus angustifolius L.), and rape (Brassica napus L. ssp. oleifera)] and two fertilizer regimes (following common organic and conventional practices). Soil samples were taken after crop harvest and analyzed for microbial biomass C and N, microbial activity (fluorescein diacetate hydrolysis, arginine deaminase activity, and dehydrogenase activity), and total C and N. The incorporation of the green manure stimulated growth and activity of the microbial communities in soils of both management histories. Soil microbial properties did not show any differences between organically and conventionally fertilized soils, indicating that crop rotation and plant type had a larger influence on the microbial biomass and enzyme activities than fertilization. Initial differences in microbial biomass declined, while the effects of farm management history were still evident in enzyme activities and total C and N. Links between enzyme activities and microbial biomass C varied depending on treatment, indicating differences in microbial community composition.     

Legacies of organic matter removal: decreased microbial biomass nitrogen and net N mineralization in New Zealand Pinus radiata plantations

The effect of variations in organic matter removal during harvesting on microbial biomass nitrogen was determined in four Pinus radiata plantations between 9 and 17 years after harvesting. Variation in microbial biomass nitrogen with season and the response of net nitrogen mineralization to organic matter removal after 9 and 17 years were also determined at two of the sites. The microbial biomass nitrogen in the fermentation-humus (FH) layer was correlated with litter fall characteristics and did not vary with organic matter removal, but the total mass of microbial biomass nitrogen in the FH layer was significantly reduced by increased organic matter removal. The microbial biomass nitrogen in the mineral soil was decreased by increased organic matter removal and was strongly correlated with moisture content and total nitrogen concentration. The FH layer microbial biomass nitrogen did not vary with season, but mineral soil microbial biomass nitrogen varied with season at one site, probably due to increased moisture availability. Net nitrogen mineralization in the mineral soil, determined by an anaerobic incubation, was decreased by increased organic matter removal and was strongly correlated with microbial biomass nitrogen. The persistence of the significant differences in microbial biomass nitrogen and net nitrogen mineralization indicated that variations in organic matter removal during harvesting have long-term effects on soil microbial properties and activity during the life of the subsequent rotation. This has implications for the selection of harvesting techniques to promote the maintenance of site productivity and to minimise disruption to the soil biota.     

Interactions between soil organic matter status, cropping history, method of quantification and sample pretreatment and their effects on measured aggregate stability

 The effects of sample pretreatment (field-moist, air-dried or tension rewetted) on aggregate stability measured by wet sieving or turbidimetry were compared for a group of soil samples ranging in organic C content from 20 to 40 g C kg^–1. Concentrations of total N, total and hot-water-extractable carbohydrate and microbial biomass C were linearly related to those of organic C. Aggregate stability measured by wet sieving using air-dried or field-moist samples and that measured by turbidimetry, regardless of sample pretreatment, increased curvilinearly with increasing soil organic C content. However, when tension-rewetted samples were used for wet sieving, aggregate stability was essentially unaffected by soil organic C content. Measurements of aggregate stability (apart from wet sieving using rewetted soils) were closely correlated with one another and with organic C, total and extractable carbohydrate and microbial biomass C content of the soils. The short-term effects of aggregate stability were also studied. Soils from under long-term arable management and those under long-term arable followed by 1 or 3 years under pasture had similar organic C contents, but aggregate stability measured by turbidimetry and by wet sieving using air-dried or field-moist samples increased with increasing years under pasture. Light fraction C, microbial biomass and hot-water-extractable carbohydrate concentrations also increased. It was concluded that both total and labile soil organic C content are important in relation to water-stable aggregation and that the use of tension-rewetted samples to measure stability by wet sieving is unsatisfactory since little separation of values is achieved. Received: 6 January 1999     

EXCLOSURE EFFECTS ON RECOVERY OF SELECTED SOIL PROPERTIES IN A MIXED BROADLEAF FOREST RECREATION SITE

Human‐caused trampling that results from excessive recreational use has caused damage to soil and vegetation in forest ecosystems in the Belgrad Forest of Istanbul. The objectives of this study were to examine effects of exclosure on selected soil properties and to determine the recovery time required for soil characteristics in a broadleaf forest recreation site. Litter biomass and topsoil (0–15 cm) were sampled in the forest, exclosure and recreational sites, and soil samples were analysed for saturation capacity, permeability, bulk density, total porosity, organic matter, root biomass, electrical conductivity and soil pH. Results showed that saturation capacity, permeability, total porosity and organic matter increased whereas bulk density decreased significantly in the topsoil under the exclosure, and all these soil properties in the topsoil of the exclosure were greater than those of recreational site. When effects of main factors were compared, averaging over sampling year and soil sampling depth, soils from the exclosure had significantly greater saturation capacity, permeability, total porosity, organic matter and litter biomass and lower bulk density values than the soils from recreational site. Six years of exclosure was effective in improving most of the soil properties in the topsoil. When topsoil and subsoil are considered together, it is obvious that a longer time period is needed for soil recovery in the forest recreational sites. Copyright © 2011 John Wiley & Sons, Ltd.     

Effects of methyl bromide fumigation,chloropicrin fumigation and steam sterilization on soil nitrogen dynamics and microbial properties in a pot culture experiment

Abstract

The effects of steam sterilization (SS), methyl bromide (MeBr) fumigation and chloropicrin (CP) fumigation on soil N dynamics and microbial properties were evaluated in a pot experiment. All disinfection treatments increased the NH⁺ ₄-N level and inhibited nitrification. The additional NH⁺ ₄-N in the CP treatment probably originated from the decomposition of microbial debris by surviving microbes, while that in the SS treatment was attributable to deamination processes of soil organic N occurring in a less labile fraction in addition to the decomposition of microbial debris. The MeBr fumigation increased the level of NH⁺ ₄-N without changing the soil microbial biomass. Based on the determinations of soil microbial biomass, substrate utilization activity (Biolog method) and microbial community structure (phospholipid fatty acid method), the effects of the MeBr, CP and SS treatments on the microbial community were compared. The MeBr fumigation had relatively mild and short-term effects on microbial biomass and activity, but altered the community structure drastically by promoting the growth of gram-positive bacteria. The CP fumigation had large and long-term impacts on microbial biomass and activity; the community structure remained unaffected except for the gram-negative bacteria. Steam sterilization had severe and persistent effects on all parameters. The severity of the effects decreased in the order SS ≥ CP > MeBr.     

Fire severity shapes plant colonization effects on bacterial community structure,microbial biomass,and soil enzyme activity in secondary succession of a burned forest

The increasing frequency and severity of wildfires has led to growing attention to the effects of fire disturbance on soil microbial communities and biogeochemical cycling. While many studies have examined fire impacts on plant communities, and a growing body of research is detailing the effects of fire on soil microbial communities, little attention has been paid to the interaction between plant recolonization and shifts in soil properties and microbial community structure and function. In this study, we examined the effect of a common post-fire colonizer plant species, Corydalis aurea, on soil chemistry, microbial biomass, soil enzyme activity and bacterial community structure one year after a major forest wildfire in Colorado, USA, in severely burned and lightly burned soils. Consistent with past research, we find significant differences in soil edaphic and biotic properties between severe and light burn soils. Further, our work suggests an important interaction between fire severity and plant effects by demonstrating that the recolonization of soils by C. aurea plants only has a significant effect on soil bacterial communities and biogeochemistry in severely burned soils, resulting in increases in percent nitrogen, extractable organic carbon, microbial biomass, β-glucosidase enzyme activity and shifts in bacterial community diversity. This work propounds the important role of plant colonization in succession by demonstrating a clear connection between plant colonization and bacterial community structure as well as the cycling of carbon in a post-fire landscape. This study conveys how the strength of plant–microbe interactions in secondary succession may shift based on an abiotic context, where plant effects are accentuated in harsher abiotic conditions of severe burn soils, with implications for bacterial community structure and enzyme activity.     

Phospholipid fatty acid profiles and xylanase activity in particle size fractions of forest soil and casts of Lumbricus terrestris L. (Oligochaeta,Lumbricidae)

Earthworms are key agents in organic matter decomposition, as they remove surface plant litter material and mix it with mineral soil. Plant litter material is comminuted in the gizzard of anecic earthworms and this is enhanced if sand particles are available. We hypothesize that this comminution of soil and litter will result in changes in the distribution of soil organic matter and soil microorganisms in the different particle-size fractions. We investigated soil organic matter content, xylanase- and microbial activity and community structure in bulk soil and particle size fractions of Lumbricus terrestris L. casts and in soil with and without the addition of beech litter.Earthworm gut passage did not affect the particle-size distribution but the content of soil organic matter was decreased in the fine sand fraction in treatments without litter (−6.80%) and increased in treatments with litter (+33.23%). The soil organic matter content of the clay fraction tended to be higher in earthworm casts. Xylanase activity was at a maximum in the fine sand fraction, lower in the coarse sand fraction and at a similar minimum in the silt- and clay-sized fraction. In the coarse sand fraction of the cast and litter treatments xylanase activity was increased by 39.1% and 124.8%, respectively. In the silt-sized fraction of casts the addition of litter increased xylanase activity (+58.6%) whereas, in casts without litter it was decreased (−36.25%). In the particle size fractions of casts, the content of bacterial PLFAs was decreased in the fine sand fraction and tended to be decreased in the clay fraction compared to the respective fractions in soil. In the silt fraction the fungal-to-bacterial PLFA ratio was higher in casts than in soil.We conclude that earthworms stabilize soil organic matter in cast aggregates predominantly by increasing the soil organic matter content in the clay fraction where it becomes protected against microbial attack. Organic matter in the coarse and fine sand fractions is decomposed primarily by fungi; xylanase is very active in these sand fractions and incorporation of litter into these fractions by the earthworms increased fungal biomass. Comminution of litter during passage through the earthworm gut increased the biomass and activity of fungi also in the silt fraction. The use of PLFA profiles in combination with other quantitative microbial methods improves the understanding of stabilizing and mobilizing processes in earthworm casts.     

Influence of organic and mineral amendments on microbial soil properties and processes

Microbial diversity in soils is considered important for maintaining sustainability of agricultural production systems. However, the links between microbial diversity and ecosystem processes are not well understood. This study was designed to gain better understanding of the effects of short-term management practices on the microbial community and how changes in the microbial community affect key soil processes. The effects of different forms of nitrogen (N) on soil biology and N dynamics was determined in two soils with organic and conventional management histories that varied in soil microbial properties but had the same fertility. The soils were amended with equal amounts of N (100 kg ha⁻¹) in organic (lupin, Lupinus angustifolius L.) and mineral form (urea), respectively. Over a 91-day period, microbial biomass C and N, dehydrogenase enzyme activity, community structure of pseudomondas (sensu stricto), actinomycetes and α proteobacteria (by denaturing gradient gel electrophoresis (DGGE) following PCR amplification of 16S rDNA fragments) and N mineralisation were measured. Lupin amendment resulted in a two- to five-fold increase in microbial biomass and enzyme activity, while these parameters did not differ significantly between the urea and control treatments. The PCR–DGGE analysis showed that the addition of mineral and organic compounds had an influence on the microbial community composition in the short term (up to 10 days) but the effects were not sustained over the 91-day incubation period. Microbial community structure was strongly influenced by the presence or lack of substrate, while the type of amendment (organic or mineral) had an effect on microbial biomass size and activity. These findings show that the addition of green manures improved soil biology by increasing microbial biomass and activity irrespective of management history, that no direct relationship existed among microbial structure, enzyme activity and N mineralisation, and that microbial community structure (by PCR–DGGE) was more strongly influenced by inherent soil and environmental factors than by short-term management practices.