Inheritance of flour paste viscosity is associated with a rice Waxy gene exon 10 SNP marker

Apparent amylose content is a key element for characterizing a rice (Oryza sativa L.) cultivar for cooking quality. However, cultivars with similar apparent amylose content can have widely varying quality attributes, including major parameters of flour paste viscosity. It has been postulated that the presence of a rice Waxy gene single nucleotide polymorphism (SNP) marker is associated with elevated Rapid Visco Analyser (RVA) properties in specific high amylose rice cultivars. A mapping population derived from a cross between two varieties, Cocodrie and Dixiebelle, having similar high apparent amylose contents, but with different paste viscosity properties and Waxy gene markers was analyzed for the genetic segregation of various pasting properties, measured with RVA instrumentation. Marker inheritance analyses revealed that the Waxy exon 10 SNP marker was associated with the proportion of soluble to insoluble apparent amylose and most RVA pasting measurements. Waxy gene markers can be used to efficiently improve the selection of rice with desirable characteristics, particularly for superior parboiling and canning quality.     

Waxy gene haplotypes: Associations with apparent amylose content and the effect by the environment in an international rice germplasm collection

Apparent amylose content (AAC), the key determinant of rice end-use quality attributes, is primarily controlled by the Waxy gene which codes for granule bound starch synthase (GBSS). We examined the combination of sequence variation in the Waxy gene and environmental effects, and their associations with AAC using 171 rice accessions originating from 43 countries. The combination of two single-nucleotide-polymorphism (SNP) markers in the Waxy gene allows for the identification of three marker haplotypes in this gene. The first SNP is at the leader intron splice site (In1 SNP), and the second polymorphism is in exon 6. The haplotypes explained 86.7% of the variation in AAC and discriminated the three market classes of low, intermediate and high AAC rice from each other. The environment affected the AAC of all haplotypes. Higher air temperature during grain development associated with a decrease in AAC of low and intermediate AAC-types, but with an increase in AAC of high AAC-type. The association of AAC with several Waxy RM190 microsatellite-(CT_n) alleles in combination with the In1 SNP was also examined. In conclusion, the Waxy haplotypes studied appear to be useful markers for selecting the AAC of breeding lines developed from the world's rice germplasm.     

Efficacy of Rheum officinale liquid formulation on cucumber powdery mildew

Rheum officinale liquid formulation, the ethanol extract from roots of R. officinale Baill., formulated as physcion 5 g l⁻¹ aqueous solution (AS), has been commercialized in China for controlling cucumber powdery mildew (Podosphaera xanthii (Castagne) U. Braun & Shishkoff). The efficacy of the product was evaluated in pot tests under controlled conditions and in open and protected fields in China over 2 years. In most trials, the efficacy reached above 80% at the rates of 10–50 mg a.i l⁻¹ water after three applications and at the rates of 20–50 mg a.i l⁻¹ water after two applications. The cucumber fruit yield in the product treatment was as many or more as triadimefon treatment, and over 53.1% compared to the untreated control. These results showed that Chinese rhubarb extract could be an effective alternative plant protecting agent in the integrated and biological management of cucumber powdery mildew.     

Field trials of Metarhizium anisopliae var. acridum (Ascomycota: Hypocreales) against oriental migratory locusts, Locusta migratoria manilensis (Meyen) in Northern China

During 2002–2006, nymph bands of Locusta migratoria manilensis (Meyen) were treated by ground and aerial applications in 6000 ha of grasslands and the nearby beach of Yellow river using a soybean oil miscible suspension ULV formulation of Metarhizium anisopliae var. acridum isolate CQMa102. The formulation was also applied in Tianjin, Henan, Hebei, Shandong and Shanxi provinces of Northern China by ground and aerial applications. During field studies, cage tests were carried out in corresponding field plots in order to estimate the mortality accurately. Doses of 3.3×10¹² and 5.0×10¹² conidia ha⁻¹ were equally effective and caused 90% mortality 9–13 days after treatment. In the ground spray trial, 3.3×10¹² conidia ha⁻¹ killed >90% of L. migratoria manilensis 11–15 days after treatment in a wide variety of vegetation and weather conditions. The decline of locust populations was slower where vegetation was taller and denser. In the aerial spray treatment, the final percent survival of locusts was lowered to 10% at 11 and 14 days in the field cage and open field locusts, respectively. Furthermore, the M. anisopliae oil miscible suspension formulation did not appear to harm natural enemies of locusts in the field.     

Biomass yield and energy balance of three perennial crops for energy use in the semi-arid Mediterranean environment

Three different lignocellulosic energy crops (a local clone of Arundo donax L., Miscanthus x giganteus Greef et Deu. and Cynara cardunculus L. var. altilis D.C. cv. “Cardo gigante inerme”) were compared over 5 years (2002–2007) for crop yield, net energy yield and energy ratio. In a hilly interior area of Sicily (Italy), two different irrigation treatments (75 and 25% of ETm restoration) and two nitrogen fertilization levels (100 and 50 kg ha⁻¹) were evaluated in a split-plot experiment. In the fourth and fifth years of the field experiment (2005–2007) no fertilizer or irrigation was used.From crop establishment to the third year, above ground dry matter yield increased over all studied factors, in A. donax from 6.1 to 38.8 t ha⁻¹ and in M. x giganteus from 2.5 to 26.9 t ha⁻¹. Fifteen months after sowing, C. cardunculus yielded 24.7 t ha⁻¹ of d.m. decreasing to 8.0 t ha⁻¹ in the third year. In the fourth and fifth years, above ground dry matter yields of all crops decreased, but A. donax and M. x giganteus still maintained high productivity levels in both years. By contrast the yield of C. cardunculus yield fell to less than 1 t ha⁻¹ of d.m. by the fourth year.Energy inputs of A. donax and M. x giganteus were higher in the year of establishment than that of C. cardunculus (34 GJ ha⁻¹ for A. donax and M. x giganteus and 12 GJ ha⁻¹ for C. cardunculus), mainly due to irrigation.Net energy yield showed low or negative values in the establishment year in A. donax and M. x giganteus. In the second and third year, net energy yield of A. donax was exceptionally high (487.2 and 611.5 GJ ha⁻¹, respectively), whilst M x giganteus had lower values (232.2 and 425.9 GJ ha⁻¹, respectively). M x giganteus attained its highest net energy yield in the fourth year (447.2 GJ ha⁻¹). Net energy yield of C. cardunculus reflected energy output of the crop, being high in the first compared to subsequent years (364.7, 277.0 and 119.2 GJ ha⁻¹, respectively for the first, second and third years).A significant effect of the different irrigation treatments was noted on all the studied parameters in all species. Conversely, only A. donax was affected by nitrogen fertilization.     

Valorization of three varieties of grape

In the present investigation, seed methanolic extracts of three Vitis vinifera (Muscat d’Italie, Syrah and Carignan) were assayed for their antioxidant activities. Results showed that there are strong variations in the contents of total phenols (440.97–121.94 mg GAE g⁻¹ DW), flavonoids (48.07–16.81 mg EC g⁻¹ DW) and tanins (37.15–14.9 mg EC g⁻¹ DW) from the studied seeds. The phenolic composition of these extracts was determined by RP–HPLC after acid hydrolysis. The main phenolic compound was quercetin with 27.2% in Muscat d’Italie, 48.8% in Syrah and 28.4% in Carignan. Besides, all seed extracts showed remarkable DPPH radical scavenging activity with IC₅₀ values ranged from 1.8 to 30 μg ml⁻¹. EC₅₀ values of reducing power activity ranged from 100 to 120 μg ml⁻¹. The high phenolic content and the considerable antioxidant activities of vitis seed extracts could potentially be considered as an expensive source of natural antioxidants.     

Growth, yield and mineral content of Miscanthus × giganteus grown as a biofuel for 14 successive harvests

Miscanthus × giganteus, a perennial rhizomatous grass commercially used as a biofuel crop was grown in a field experiment on a silty clay loam soil for 14 years. There were 3 rates of fertilizer nitrogen (N), none (control), 60 kg N ha⁻¹ yr⁻¹ and 120 kg N ha⁻¹ yr⁻¹ as cumulative applications. The crop was harvested in winter and dry matter yield measured. N did not influence yield. Yield, which increased for the first 6 years, decreased in years 7 and 8, but then increased again and was highest in the 10th year averaging 17.7 t ha⁻¹ across all treatments. Differences in total production over the14 years were only 5% between the highest and lowest yielding treatments and averaged 178.9 t ha⁻¹ equivalent to 12.8 t ha⁻¹ yr⁻¹. In the first 10 harvests, 92% of dry matter was stem. Although the study showed N fertilizer was not required, it is considered that an application of 7 kg P ha⁻¹ yr⁻¹ and 100 kg K ha⁻¹ yr⁻¹ would avoid soil reserve depletion. Pesticides were not required every year and the crop can be considered as low input with a high level of sustainability for at least 14 years.     

稻米淀粉粘滞性谱特征的表现及其遗传

通过对水稻F[sub]2[/sub]无性系群体及大量品种（系）的RVA谱的测定,研究了稻米淀粉RVA谱的类型及遗传。结果表明：（1）RVA谱可分为A~F六种类型,糯稻的特征图谱为A型,籼稻的特征图谱有B、C、D、E、F五种类型,粳稻有D、E、F三种类型。（2）稻米的表观直链淀粉含量（AAC）不同,RVA谱则不同。稻米的AAC相同,RVA谱也可不同,在低、中AAC类型中,RVA谱的差异能反映品种食味品质的差异。（3）4个杂交稻组合的RVA谱表现出相同的特点,除最高粘度和起浆温度外,其他特征值均介于双亲之间,表明杂交稻米品质改良要求不育系与恢复系的改良同步进行。（4）在F[sub]2[/sub]无性系群体中,RVA谱各特征均呈连续分布,最高粘度是典型的数量性状遗传,热浆粘度、冷胶粘度、崩解值、消减值、回复值都可能是由一对主效基因和若干微效基因共同控制的遗传。     

Variability in essential oil and bioactive chiral monoterpenoid compositions of Indian oregano (Origanum vulgare L.) populations from northwestern Himalaya and their chemotaxonomy

The chemical composition of essential oils isolated from aerial parts of native populations of Origanum vulgare L. from northwestern Himalaya was investigated by enantioselective gas chromatography (enantio-GC), capillary-gas chromatography (capillary-GC) and GC–MS. Seventy compounds, which accounted for 84.9–97% of the oil composition, have been identified. The oils were allotted to two main groups; the first group had a high percentage of components belonging to the thymol/carvacrol biosynthetic pathway and the second was characterized by a different sesquiterpene composition and a high linalool and bornyl acetate percentage. Essential oils of O. vulgare populations from Rilkot and Dhanachuli areas in northwestern Himalaya were characterized by high monoterpenoids proportions as compared to Nainital and Bhowali populations, which were dominated by sesquiterpenoids. High proportions of thymol (29.2–82%) were found only in two populations. Composition of the samples collected from Dhanachuli area differed from Nainital and Bhowali collections by a unique presence of carvacrol. Notably, there were significant differences in the concentration of rest of the terpenes in all the collections. On enantio-GC, enantiomeric excess for (3R) (−)- and (3S) (+)-linalool, (S) (+)- and (R) (−)-terpinen-4-ol, (S) (−)- and (R) (+)-α-terpineol, (1S) (−)-bornyl acetate and (1S) (−)-borneol were established in populations from Bhowali and Dhanachuli area. Moreover, linalool type oregano may be useful in promoting wider commercial utilization of the biodiversity of this species.     

Direct lipase-catalyzed lipophilization of chlorogenic acid from coffee pulp in supercritical carbon dioxide

The direct esterification of chlorogenic acid (5-CGA) by immobilized Candida antarctica lipase B (Novozym 435) in supercritical CO₂/t-butanol has been studied. The Taguchi approach was applied to evaluate the effects of temperature (35–55 °C), pressure (150–250 bar), t-butanol (2–10%, v/v), and the enzyme amount (10–30 mg/ml), on the ester concentration and overall conversion. Optimum reaction conditions were established at: 150 bar, 55 °C, 10% t-butanol (v/v), 20 mg/ml of lipase. Addition of 20 mg/ml of molecular sieves (3 Å) was also necessary to minimize the inhibiting effect of the increasing water concentration. Maximum conversions reached 77, 82 and 85% in 25 h using geraniol, pentanol and heptanol as aliphatic chain donors, respectively. HPLC analysis demonstrated the selective esterification of 5-CGA from a coffee pulp aqueous-methanolic extract, which reached a conversion to heptyl ester of 65% at the optimal condition. The supercritical CO₂ selectivity towards the esterified product was the working principle of this study, by which minimized interphase transport limitations and enhanced mass-transfer phenomena substantially improved the reaction kinetics.     

Prior weakening of Macrophomina phaseolina and Fusarium propagules for enhancing efficiency of Brassica amendments

In a two year field study, the effect of varying intensities of sub-lethal heating on the efficiency of Brassica amendments in controlling viable populations of Macrophomina phaseolina and Fusarium oxysporum f sp. cumini was determined in an arid region of India. After 30 d of dry summer exposure of pathogen infested soil, incorporation of mustard residues and oil cake (0.18% and 0.04% w/w) and then applying one irrigation caused significant reduction by 75.3–81.3% in viable counts of M. phaseolina that causes dry root rot of legumes and by 93.9% in counts of F.o. f. sp. cumini causing wilt of cumin (Cuminum cyminum L.) at 0–15 and 16–30 cm depths. Increasing duration of summer exposure to 60 d improved the reductions in viable propagules of M. phaseolina by 83.6–90.4% and in F.o. f. sp. cumini by 78.2–94.8% at same soil depths. At certain heat levels, reduction in viable population of Fusarium due to amendments and irrigation was greater than that recorded in Macrophomina. Significantly low levels of reduction in pathogenic propagules of Macrophomina (63.9–71.4%) and Fusarium (48.0–57.2%) under shade compared to unshaded conditions indicated that mild heating did not cause discernible weakening effect. In second season also, 89.2–91.5% and 78.5–95.8% reduction in counts of Macrophomina and Fusarium, respectively was achieved by the application of amendments after 60 d of summer exposure at 0–30 cm soil depth. These results suggested a new approach to improve the control of soil-borne plant pathogens in hot arid regions by combining prolonged sub-lethal heating, effective naturally available on-farm wastes as soil amendments and one summer irrigation.     

Productivity and nitrogen use of tea plantations in relation to age and genotype

Lack of science-based knowledge on responses of tea bushes to nitrogen (N) in ageing tea plantations hampers the development of ecologically sound and economically profitable N-management strategies. It is hypothesized that ageing of tea plantations lowers productivity and weakens the yield response to N application. To establish insight into the relationship between ageing, productivity and N-use efficiency, seasonal and annual responses to N were studied in field experiments superimposed on a chronosequence of tea plantations (14, 29, 43, and 76 years). The two youngest plantations comprised of a clonal cultivar planted at a density of 10,766 and 13,448 plants ha⁻¹ and the two oldest plantations of seedlings at a density of 6730 and 7179 plants ha⁻¹, respectively. N was applied as urea at 0, 50, 100, 200, and 400 kg N ha⁻¹ year⁻¹.Mean annual made tea (mt) yields were higher for the clonal tea compared to the seedling tea and increased with age within genotypes. The clonal bushes out-yielded the seedlings by about 800 kg mt ha⁻¹ under favourable weather conditions in 2003/2004, while yield differences between the genotypes were minimal under stress conditions in 2002/2003. The yields of the clonal 29- and 14-year-old plantations responded positively to N fertilizer, whereas the 43- and 76-year-old plantations did not. Within the clonal cultivar made tea yield and N uptake were closely associated. Apparent shoot N-recovery (ASNR) based on N uptake by ‘two leaves and a bud’ was higher in clonal than in seedling tea plantations. A simple N-balance sheet showed that N excess was strongly associated with the rate of N application and N uptake.The effect of plant genotype on productivity was greater than the effect of age. The genotypes (seedlings or a clonal cultivar) to a great extent determined the yield response to N. In a well-managed mature tea plantation of up to 80 years, ageing did not lower the yielding ability within the same genotype. Thus, planting improved genotypes and implementing appropriate N-management strategies are key factors to avoid the risk on decline of productivity and profitability associated with ageing and bush degradation. N-management strategies should be based on the yielding potential of tea bushes in the target environment as defined by plant genotype and age of plantations.     

Yield and yield components of saffron under different cropping systems

This study was conducted to evaluate yield and yield components of saffron (Crocus sativus L.) in response to (i) production system (PS) (irrigated vs. non-irrigated); (ii) corm size (CS) (medium −2.25 to 3 cm diameter vs. small corms <2.25 cm diameter); (iii) planting depth (PD) (10 cm vs. 20 cm); and iv) planting density (PDEN) (51 corms m⁻² vs. 69 corms m⁻²).This fully replicated multifactorial design was started in August 2000, and carried through November 2003, when the fourth saffron harvest took place. The total and average fresh weight of stigmas, and the number of flowers were measured at each harvest.Results indicate that three of the four factors tested (PS, CS and PD) had a significant effect on the quantitative yield during the two most productive flowering years (2001 and 2002) and on the total flowering. Irrigated cultivation, medium size corms and 10 cm planting depth had the greatest effect in increasing the quantitative production of saffron.Yield was also affected by planting density in contrasting ways. Whereas at high PDEN yield increased per unit of surface, at low PDEN, yield increased with respect to the initial number of corms planted.The fresh weight of stigmas per flower yield component, an important aspect that determines the quality of the spice, was enhanced when corms were planted at 20 cm depth and when irrigation was applied to the crop.     

蔗糖合成酶(SUS)基因的SNP标记开发及其与淀粉性状的关联分析

通过直接测序法获得玉米亲本(H21和紫糯96-619)sus1基因全长序列并进行亲本间序列比对,得到120个SNP位点,通过高分辨率熔解曲线(HRM)对300个近等基因系H21 BC5F2:3进行SNP位点分型,并将后代的基因型与群体的直链淀粉含量和淀粉糊化特性进行关联分析。结果表明,marker 31与直链淀粉含量和淀粉崩解值、峰值时间、糊化特性均连锁紧密;marker 17与直链淀粉含量和淀粉的峰值时间、淀粉最终黏度均连锁紧密;marker12与直链淀粉含量、淀粉的峰值时间连锁紧密。     

Chemical composition and pasting properties of einkorn (Triticum monococcum L. subsp. monococcum) whole meal flour

Einkorn (Triticum monococcum L. subsp. monococcum) is an ancient wheat appreciated for its high proteins, carotenoids and tocols content. To better understand its potential for human consumption and food preparation, composition and pasting properties of 65 einkorn accessions, of different geographical origin but cultivated at S. Angelo Lodigiano (Italy), were evaluated. Eight Triticum turgidum and seven Triticum aestivum cultivars, belonging to different subspecies, were assessed as controls.On average, the einkorn samples had light seeds (25.0 mg/kernel), extra-soft texture (238.3 g), high protein content (18.2%), high ash content (2.35%), low SDS sedimentation volume (25.6 ml), high carotenoids (8.36 μg/g) and high yellow pigments (8.46 μg/g). The pasting parameters studied were peak viscosity (average: 2426 cP), breakdown (765 cP), final viscosity (2788 cP) and setback (1126 cP). Total amylose (25.7%) and total starch (65.5%) were also measured. Significant differences from the controls and a broad variation for all the traits analysed were observed. Einkorns from diverse geographical areas showed different mean values for all characters, apart from ash content.The good pasting properties, coupled with high proteins and carotenoids content, suggest that einkorn is particularly suited for the production of baby and specialty foods.     

Phosphorus accumulation and depletion in soils in wheat–maize cropping systems: Modeling and validation

Long-term (over 15 years) winter wheat (Triticum aestivum L.)–maize (Zea mays L.) crop rotation experiments were conducted to investigate the accumulation of phosphorus (P) at five sites differing geographically and climatically in China. The results showed that, in soils without P added, the concentration of soil P extracted by 0.5 mol L⁻¹ NaHCO₃ at pH 8.5 (Olsen-P) decreased with cultivation time until about 3 mg kg⁻¹, afterwards it remained constant. The trend of decrease in Olsen-P in soils without P added could be described by an exponential function of time. The concentration of Olsen-P in soils with P fertilizers increased with cultivation time and the model of accumulation of Olsen-P in soils could be described using P application rate, crop yield and soil pH. The accumulation rate of Olsen-P in the long-term wheat–maize crop rotation experiments was 1.21 mg kg⁻¹ year⁻¹ on average. If the target yield of wheat and maize is 10 ton ha⁻¹ in the soil with pH 8, the increasing rates of Olsen-P in soils as estimated by the model will be 0.06, 0.36, 0.66, 0.95, 1.25 and 1.55 mg kg⁻¹ year⁻¹ when P application rates are 30, 40, 50, 60, 70 and 80 kg P ha⁻¹ year⁻¹, respectively. The models of accumulation of Olsen-P in soils were validated independently and could be used for the accurate prediction of accumulation rate of Olsen-P in soils with wheat–maize rotation systems. Also the application of the model was discussed for best management of soil P in agricultural production and environment protection.     

Study of the effect of hydrothermal process conditions on pasta quality

The effect of hydrothermal treatment on the pasting, hydration properties and colour quality of commercial fresh pasta were studied following an Instantaneous Controlled Pressure Drop treatment. This hydrothermal procedure involves a physical modification at high temperature (<144 °C) and restricted moisture content (<30%) during a very short time (15–40 s) followed by a rapid pressure drop to a vacuum (50 mbar). Two process variables (steam pressure level and processing time) were investigated using response surface methodology. Steam pressure level had the greatest effect on hydration and pasting parameters. Increased pressure resulted in elevation of mass ratio between cooked and uncooked pasta (W_i/W₀)_{100 °C} and reduction of for all treated pasta. The optimum cooking time of untreated pasta was 7 min (W/W₀=2.4), whereas for the same ratio it was less than 1 min for pasta treated at pressures ranging between 2.5 and 3.5 bar. The viscosity at 10 min (V₁₀) increased linearly when the pressure level increased. V₁₀ was 146 cP for untreated pasta whereas it reached 2659 cP for pasta treated at 3.9 bar (144 °C) for 25 s. The cold paste viscosity and setback viscosity decreased when the pressure varied from 1 to 3.9 bar.     

Molecular characterization and comparative analysis of four new genes from Sec2 locus encoding 75K γ-secalins of rye species

Using a PCR-based strategy, four new 75K γ-secalin genes were isolated from Secale cereale, Secale vavilovii, Secale sylvestre, and Secale strictum in genus Secale (rye). Based on amino acid sequences, the primary structure of the 75K γ-secalin subunits was demonstrated, which was composed of four main structural regions: (a) a conservative 19 amino acids signal peptide, (b) a steady short N-terminal region of 12 amino acids containing a cysteine residue, (c) a repetitive domain, which began with the conservative tetrapeptides PQ₃ and was rich in glutamine and proline. PFPQ₁₋₂(PQQ)₁₋₂ was the core repeat motif in the repetitive region. Besides amino acid substitutions, this region showed variations in length due to the insertion and deletion events. In the repetitive region of EF432549 (Secale strictum), there were two octapeptides (PFPQQPQQ and PVPQQSQQ) insertions. On the contrary, deletion events of two residues (QT) took place in EF432546 (Secale sylvestre). Accounting for the amino acid replacement, an extra cysteine residue appeared in the repetitive region of EF432546, which did not exist in other genes, and (d) a conserved 143 amino acids C-terminal domain including eight cysteine residues. The implications of the results for quality improvement are discussed.