Spatial and temporal variation in fish community structure and diversity in the largest tropical flood‐pulse system of South‐East Asia

The Tonle Sap River and Lake (TSRL) is South‐East Asia's largest tropical flood pulse with a flow‐reversal system that supports one of the world's largest freshwater fisheries. However, among the world's tropical floodplains, the resources of the TSRL have received little ecological research. Here, we described the spatiotemporal TSRL fish diversity and community variation using daily records from 2012 to 2015 on fish abundance from six sites covering the TSRL system. We found that high fish diversity occurred in sites located in the middle of Tonle Sap Lake, and the lowest diversity was observed in the southern section. The spatial abundance distribution patterns displayed a river–lake gradient, with three fish assemblages that were clustered based on their composition similarities and were characterised by 96 indicator species. In the southern section, fish assemblages were characterised by longitudinal migratory fishes; in contrast, in the middle system, fish assemblages were represented by species with combined ecological attributes (i.e. longitudinal and lateral migratory species and floodplain residents). Towards the northern section, fish assemblages were composed of lateral migratory and floodplain resident species. Species richness and abundance peaked at approximately 2–2.5 and 4 months, respectively, after the peak flow in early October, during which Tonle Sap River resumes its normal flow direction (outflow). This suggests that seasonal flood pulses (i.e. rising and falling water levels) play a pivotal role in structuring spatiotemporal variation in the TSRL fish assemblages. Our study has implications for fisheries monitoring and conservation initiatives.     

Variability in coral reef fish baseline and benchmark biomass in the central and western Indian Ocean provinces

1. Reef fish biomass is increasingly recognized as a key indicator of fishery and biodiversity status linked to ecosystem integrity on coral reefs, and yet the evaluation of appropriate baselines for biomass, and what drives variation in potential baselines, is sparse.
2. Variability in reef fishable biomass was assessed to test for the existence of baselines or benchmarks (B&Bs), based on field studies of 223 reef sites in remote uninhabited reefs, in high-compliance closures of >5 km², and among the increasing number of small and recent closures.
3. The purpose of the study was to examine the effects of human habitation, travel time and distance to cities, habitat, depth, benthic cover, and environmental variables on fish B&Bs.
4. There were large differences in the three categories of ‘no fishing’, with human habitation being the single best predictor of biomass. In remote areas without people (>9 hours of travel time), fish biomass had a mean of 2,450 kg ha^–1 (95% confidence interval, 95% CI, 2,130–2,770 kg ha^–1; median = 1,885 kg ha^–1).
5. In these remote areas, biomass was weakly associated with human travel time to the site and, to a lesser extent, wave energy. In high-compliance closures, fish biomass peaked at 20 years and 5–10 km², and levelled at 910 kg ha^–1 (95% CI 823–989 kg ha^–1) for both closure age and size. There was little evidence that human travel time and environmental factors influenced biomass greatly in these established closures. In small and recent closures (<15 years), habitat, depth and closure age were the best predictors of fish biomass.
6. Based on the weakness of environmental factors, country or site-specific B&Bs are not required in these two provinces. However, human habitation in the seascape as well as the size and age of closures set limits to the maximum achievable biomass. The importance of environmental factors increases as the no-fishing areas and closure times decline. Reef wilderness is not widespread in these provinces, but provides key services and therefore needs to be included in conservation and fisheries policy and management goals.

     

A comparative analysis of harvested and unharvested populations of the smooth Venus clam Chionista fluctifraga in the Gulf of California

The shellfishery of the smooth Venus clam Chionista fluctifraga is not regulated in Mexico. Therefore, information on the ecology of this species and the effects of the fishery on its populations is necessary to inform management. We present results from a comparative analysis of the density, biomass, and size structure of smooth Venus clam populations in an area not subjected to harvest (UH) and two areas under harvest (H1 and H2) in Bahía de San Jorge (Gulf of California). The UH population had a density of 20.8?±?1.4 ind m^?2 and a biomass of 392?±?39.7 g m^?2 on average; the size range was 3.1–55.5 mm (average 28?±?15.2 mm), and the predominant size class was 40–50 mm. The H1 and H2 populations had, respectively, densities of 14.5?±?9.5 and 7?±?6.8 ind m^?2 and biomass of 123.4?±?20.4 and 123.6?±?22.6 g m^?2; the size ranges were 2.1–49 and 4.3–48.7 mm (averages 24.5?±?14.3 and 30.1?±?13.2 mm), and the predominant size classes were 0–10 mm and 40–50 mm. Clams in the three populations show an aggregated distribution and live in medium-fine sands (no significant differences in grain size among sites) with oligotrophic water. Although the densities observed in the harvested sites are relatively high, negative effects of the shellfishery are detected. For example, all clam sizes are being harvested, and clams are no longer found in the uppermost zone in harvested sites, with potential impacts on other species. This poses various threats that, together, may decrease the stability of the intertidal ecosystem and affect productivity.

     

Intra‐annual patterns of coastal larval fish assemblages along environmental gradients in the northeastern Mediterranean

To date, little is known about the larval‐fish assemblages (LFAs) in the eastern Mediterranean. The purpose of this study is to investigate the intra‐annual variations of LFAs with an emphasis on the effects of physical, chemical, biological and meteorological conditions in the gulf of Iskenderun, which is a shallow (100 m maximum depth), semi‐enclosed bay located in the northeastern corner of the Mediterranean. The gulf is under the influence of offshore waters throughout the year. The study was based on an ichthyoplankton survey program performed at 28 stations over 12 months, between November 2009 and October 2010. During the study, a total of 11,411 larval individuals belonging to 177 taxa were sampled. The jackknife estimate of maximum species richness was 225 ± 19 for the study area. The maximum larval richness (84 species) and abundance (827 larvae/10 m²) values coincided with spring bloom in April. Gobiids dominated the ichthyoplankton of Iskenderun Bay by constituting 9% of species richness and 42% of total individuals. Four LFAs were identified which were in early winter (November to January), late winter (February and March), spring (April to June) and summer (July to October). The intra‐annual variations of richness, abundance and composition of ichthyoplankton were significantly correlated with the temperature and mesozooplankton biomass. The wind conditions and thermal stratification were also significantly correlated with the composition of LFAs. In conclusion, phenology of LFAs were formed under the influence of physical and tropho‐dynamic conditions in Iskenderun Bay, Northeastern Mediterranean.     

Fish assemblages associated with artificial reefs of concrete aggregates or quarry stone offshore Miami Beach,Florida, USA

Few studies have compared the suitability of different artificial reef construction materials in terms of their efficacy in acquiring diverse faunal assemblages. We compared the fishes associated with 12 co-located reefs constructed of limestone quarry boulders, concrete-gravel aggregate, or concrete-tire aggregate (four of each substrate) in 7 m of water, 200 m offshore Miami Beach, Florida, USA. All 12 reefs were deployed 100 m apart the same day in two lines of six. The four quarry stone reefs consist of a pile of 50 boulders each. The remaining eight reefs, of concrete-gravel aggregate and concrete-tire aggregate, were each constructed with 25 1.5 m edge and 25 1.2 m edge tetrahedron modules. Every two months from October 1998 to February 2001, SCUBA divers recorded fish species, abundance, and length, as well as spiny lobster, Panulirus argus, abundance. One hundred and forty-six species of fishes were recorded during the study period. The abundance and species richness of fish on each treatment exhibited a significant (p<0.05) seasonal variation with summer months having the greatest numbers and winter the lowest. There was no significant difference in total fish or spiny lobster abundance or fish biomass amongst the three reef types (p>0.05). Likewise, multi-dimensional scaling of Bray-Curtis dissimilarity indices did not indicate clustering of fish assemblages by reef type. Comparison of pre-deployment fish counts from the reef sites and neighboring hard bottom and jetty with counts from the same sites two years post-deployment indicate the artificial reefs increased both fish abundance and richness in the local area.     

Experimental harvesting of Mytilus galloprovincialis: Can an alien mussel support a small-scale fishery?

In an effort to stimulate new fisheries and address historic imbalances in access to fishing rights, there has been a recent focus on the development of small-scale fisheries in South Africa. To assess the biological viability of a fishery for the alien mussel Mytilus galloprovincialis, an experimental fishery operated by two impoverished coastal communities was initiated. Harvesting took place on a rotational basis at three sites, nested within four locations. At each of these 12 sites, 5 treatments were undertaken to span a spectrum of harvesting intensities (F = 0, 0.3, 0.6, 0.9 and a once-off total removal). A dynamic biomass-based fisheries model was developed to predict changes in exploited populations over time. Monthly maximum sustainable yield (MSY) estimates peaked at 1560 kg per 100 m of shore in March–April and September–October, but dropped by two orders of magnitude to 15 kg per 100 m of shore during the remainder of the year. The two peaks in MSY corresponded to the peak spawning periods of M. galloprovincialis along the South African west coast. Consequently, harvesting will only be viable if focused within two seasons spanning the peaks in MSY. Under these conditions, a range of harvesting intensities between F = 0.1 and 0.3 would permit long-term biological sustainability of a fishery. If implemented, this would represent the first instance of a marine invasive species being utilised to achieve socio-economic goals in South Africa.     

The highs and lows of herring: A meta‐analysis of patterns and factors in herring collapse and recovery

Pacific and Atlantic herring populations (genus Clupea) commonly experience episodic collapse and recovery. Recovery time durations are of great importance for the sustainability of fisheries and ecosystems. We collated information from 64 herring populations to characterize herring fluctuations and determine the time scales at low biomass and at high and low recruitment, and use generalized linear models and Random Survival Forests to identify the most important bottom‐up, top‐down and intrinsic factors influencing recovery times. Compared to non‐forage fish taxa, herring decline to lower minima, recover to higher maxima and show larger changes in biomass, implying herring are more prone to booms and busts than non‐forage fish species. Large year classes are more common in herring, but occur infrequently and are uncorrelated among regionally grouped stocks, implying local drivers of high recruitment. Management differs between Pacific and Atlantic herring fisheries, where at similarly low biomass, Pacific fisheries tend to be closed while Atlantic fisheries remain open. This difference had no apparent effect on herring recovery times, which averaged 11 years, although most stocks with longer recovery periods had not yet recovered at the end of the observation period. Biomass recovery is best explained by median recruitment and variability in sea surface height anomalies and sea surface temperatures—higher variability leads to shorter recovery times. In addition, the duration of recruitment failure is closely linked with low biomass. While recovery times rely on the nature of the relationship between spawning biomass and recruitment, they are still largely governed by complex and uncertain processes.     

Cage aquaculture in Neotropical waters promotes attraction and aggregation of fish

The influence of cage aquaculture on the attraction and aggregation of wild fish was evaluated with an experimental tilapia farming structure. The structure was installed in the Corvo River, Rosana Reservoir, Paranapanema River basin, for 140 days. Samples were taken before and after farming began. Gillnets on the surface and near the bottom at different distances from the cages (0, 100 and 400 m) were used for fish sampling. The effects of the food supply at two protein levels were also analysed: Phase 1 = 32% PB and Phase 2 = 28% PB. Changes in species richness and abundance were observed, with the number of individuals and the fish biomass increasing significantly just after the farming began. Some species, such as Iheringichthys labrosus, presented increased abundance near the cages, while others, such as Plagioscion squamosissimus, were more abundant far from the cages. Auchenipterus osteomystax was the most abundant species during the experiment, especially when the protein content of the pellets was higher. It was demonstrated that farming tilapia in cages profoundly altered the abundance and composition of the wild ichthyofauna, suggesting the need to propose effective regulations for such activities, including fisheries restrictions in farmed areas or even the prohibition of cage farming.     

Effects of organic effluents from a salmon farm on a fjord system. II. Temporal and spatial patterns in infauna community composition

This study examined spatial and temporal variations in infaunal community composition in a gradient away from a large salmon farm (producing 2910 tonnes during each production cycle) in Uggdalsfjorden, western Norway. The farm is located at a water depth of 230 m, is moored at a single point and moves with prevailing currents and winds. The study showed that the large-scale effects on the benthos were restricted to the nearest 250 m of the farm. This zone was dominated by the polychaetes Paramphinome jeffreysii, Prionospio steenstrupi, Capitella capitata and Heteromastus filiformis, the bivalves Thyasira sarsii and Abra nitida and the echinoderm Brissopsis lyrifera for the duration of the two-year study. Highest abundance and biomass were recorded at peak production at the farm, with 30 000 individuals m^− 2 and 60 g ash-free dry weight (AFDW) m^− 2. At this time abundance was 10 and biomass was 35 times higher within 250 m from the farm than 3 km away. Highest species richness was found 550–900 m from the farm, where, at peak production, the number of species doubled from 20 to 40 species per 0.1 m^− 2. The study showed that at deep sites organic waste affects benthos on a spatial scale much larger than at shallow water sites, and although the infauna community composition varied over time, the consistency in the spatial pattern in the relationship between species richness, abundance and biomass in the course of the study indicates that the observed patterns were temporally stable. The loadings of organic matter from the farm did not exceed the capacity of the benthic community for decomposition, as indicated by the low and stable content of organic matter in the sediment around the farm.     

Río de la Plata voyagers: Deciphering the migration ecology of a vulnerable marine catfish (Genidens barbus) in a large subtropical river (lower Uruguay River)

1. Genidens barbus is a vulnerable marine migrant catfish with low fecundity, a complex life cycle (i.e. mouth breeding), and is the target of industrial and artisanal fisheries of several countries. This species regularly migrates from marine to freshwater environments of the south-western Atlantic.
2. The aim of this work was to delve deeper into the migration ecology of G. barbus, characterizing both its timing and potential environmental drivers. Furthermore, aspects of the population structure and reproduction of migrants in the lower Uruguay River were studied and the presence of juveniles in the adjacent estuarine recruitment area was evaluated.
3. Data from 11 years (2008–2018) of records of adult G. barbus captured by artisanal fisheries were used alongside relevant environmental variables that were recorded monthly. Reproductive biology (i.e. sex ratio, gonadosomatic index, fecundity, and oocyte size) was analysed for a period of 3 years (2016–2018). The juvenile abundance in the Río de la Plata estuary was evaluated seasonally.
4. A total of 935 adult individuals of G. barbus were captured, representing a total biomass of 3,123 kg. The migration timing was from early spring to early summer. The abundance of migrants strongly increased with river discharge, suggesting that this variable regulates the upriver migration. Furthermore, pre- and post-spawn females and males displaying mouth breeding were recorded during the study period, confirming G. barbus reproduction in the lower Uruguay River.
5. The results obtained suggest that G. barbus ascend to spawn in the freshwater environments upstream from the mouth of the Uruguay River. Then, adult males incubate and carry the embryos downstream, releasing juveniles in the Río de la Plata estuary.
6. This relevant information will help with the implementation of effective management polices (e.g. fishing restrictions during the reproductive period) for the presently unregulated fishery of this vulnerable species in the lower Uruguay River.

     

Bathymetric distribution of beni-zuwai crab <Emphasis Type="Italic">Chionoecetes japonicus</Emphasis> in the northern part of the Sea of Japan

Surveys of beni-zuwai crab were conducted to clarify the bathymetric distribution and fecundity of beni-zuwai crab populations without the effects of bias due to fisheries. The results were compared with previous ones obtained at the heavily exploited Yamato Bank. Two sites in the northern part of the Sea of Japan, off southwest Hokkaido (200–2500 m deep) and West-Tsugaru Basin (300–1900 m deep), both of which are experiencing low exploitation levels, were surveyed in August to September, 2007. There was an abundance of morphologically immature crabs of both sexes in the depth range 1800–2100 m, and a few occurred at depths >2200 m. Immature crabs of <40 mm carapace width were found to migrate downslope to depths of 1800–2100 m and then to migrate upslope during molting for males and after maturity molting for females. Although data were lacking for depths >2000 m at the West-Tsugaru Basin, these relationships were significant for the pooled data of both localities, and they were similar to the results at the Yamato Bank. Clutch fullness of ovigerous females was negatively correlated with depth, which indicates that the low clutch fullness was not induced by fisheries, although the similar phenomenon observed at the Yamato Bank had previously been considered to be due to fishery effects.     

Predation on wild and hatchery salmon by non‐native brown trout (Salmo trutta) in the Trinity River,California

Non‐native predators may interfere with conservation efforts for native species. For example, fisheries managers have recently become concerned that non‐native brown trout may impede efforts to restore native salmon and trout in California's Trinity River. However, the extent of brown trout predation on these species is unknown. We quantified brown trout predation on wild and hatchery‐produced salmon and trout in the Trinity River in 2015. We first estimated the total biomass of prey consumed annually by brown trout using a bioenergetics model and measurements of brown trout growth and abundance over a 64‐km study reach. Then, we used stable isotope analysis and gastric lavage to allocate total consumption to specific prey taxa. Although hatchery‐produced fish are primarily released in the spring, hatchery fish accounted for most of the annual consumption by large, piscivorous brown trout (>40 cm long). In all, the 1579 (95% CI 1,279–1,878) brown trout >20 cm long in the study reach ate 5,930 kg (95% CI 3,800–8,805 kg) of hatchery fish in 2015. Brown trout predation on hatchery fish was ca. 7% of the total biomass released from the hatchery. Brown trout only ate 924 kg (95% CI 60–3,526 kg) of wild fish in 2015, but this was potentially a large proportion of wild salmon production because wild fish were relatively small. As large brown trout rely heavily on hatchery‐produced fish, modifying hatchery practices to minimise predation may enhance survival of hatchery fish and potentially reduce the abundance of predatory brown trout.     

Assessing spillover from marine protected areas and its drivers: A meta‐analytical approach

Overfishing may seriously impact fish populations and ecosystems. Marine protected areas (MPAs) are key tools for biodiversity conservation and fisheries management, yet the fisheries benefits remain debateable. Many MPAs include a fully protected area (FPA), restricting all activities, within a partially protected area (PPA) where potentially sustainable activities are permitted. An effective tool for biodiversity conservation, FPAs, can sustain local fisheries via spillover, that is the outward export of individuals from FPAs. Spillover refers to both: “ecological spillover”: outward net emigration of juveniles, subadults and/or adults from the FPA; and “fishery spillover”: the fraction of ecological spillover that directly benefits fishery yields and revenues through fishable biomass. Yet, how common is spillover remains controversial. We present a meta‐analysis of a unique global database covering 23 FPAs worldwide, using published literature and purposely collected field data, to assess the capacity of FPAs to export biomass and whether this response was mediated by specific FPA features (e.g. size, age) or species characteristics (e.g. mobility, economic value). Results show fish biomass and abundance outside FPAs was higher: (a) in locations close to FPA borders (<200 m) than further away (>200 m); (b) for species with a high commercial value; and (c) in the presence of PPA surrounding the FPA. Spillover was slightly higher in FPAs that were larger and older and for more mobile species. Based on the broadest data set compiled to date on marine species ecological spillover beyond FPAs' borders, our work highlights elements that could guide strategies to enhance local fishery management using MPAs.     

Estimating fishery effects in a marine protected area: Lamlash Bay

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Efficiency of Northern pike (Esox lucius) stocking in metropolitan France at large spatial and temporal scales

Stocking and electrofishing occurrence and abundance data for northern pike Esox lucius L. in >3800 km of French rivers across 7 years were compared to assess the effect of recreational fisheries stocking programmes on wild pike populations. A positive relationship was found between the additive effect of stocking and the size of the stocked pike. However, the stocking programmes implemented in France by recreational fishery managers from 2008 to 2013 increased the probability of pike occurring in the river network, without increasing abundance in well-established pike populations, because pike stocked in their early-life stages were used in most of the stocking programmes.     

Bait worms: a valuable and important fishery with implications for fisheries and conservation management

Bait is an integral part of coastal life, but is perceived as a low‐value resource as fisheries are data‐limited, locally focussed and largely unregulated even though the ecological impacts of collection are considerable. An empirical assessment of three UK‐based ragworm fisheries combined with an analysis of published literature has produced the first global assessment of polychaete bait fisheries. The five most expensive (retail price per kg) marine species sold on the global fisheries market are polychaetes (Glycera dibranchiata, Diopatra aciculata, Nereis (Alitta) virens, Arenicola defodiens and Marphysa sanguinea). We estimate that 1600 t of N. virens per annum (worth £52 million) are landed in the UK with approximately 121 000 tonnes of polychaetes collected globally valued at £5.9 billion. Using remote closed circuit television (CCTV) cameras to monitor collectors, activity at local sites is considerable with a mean of 3.14 collectors per tide (day and night) at one site and individuals digging for up to 3 h per tide, although intensity differed seasonally and between sites. Collectors removed on average 1.4 kg of N. virens per person per hour, walking a considerable distance across the intertidal sediment to reach areas that were usually already dug. The implications of these human activity and biomass removal levels are explored in the context of fisheries and conservation management. At local, regional and national scales, polychaete bait fisheries are highly valuable, extract significant biomass and have considerable impacts; therefore, they urgently require governance equivalent to other fisheries.     

Effect of environmental conditions on the seasonal and inter‐annual variability of small pelagic fish abundance off North‐West Africa: The case of both Senegalese sardinella

The objective of this study was to assess the effect of environmental variations on the abundance of Sardinella aurita and Sardinella maderensis in Senegalese waters in the upwelling system. Monthly data indicating the abundance of sardinella were first estimated from commercial statistics, using Generalized Linear Model from 1966 to 2011. Abundance indices (AIs) were then compared with environmental indices, at the local scale, a Coastal Upwelling Index (CUI) and a coastal Sea Surface Temperature (SST) index, and on a large scale, the North Atlantic Oscillation (NAO), the Atlantic Multidecadal Oscillation (AMO) and the Multivariate El Niño Southern Oscillation Index (MEI), using correlations and times series analyses. The results showed that the abundance of sardinella is determined by a strong seasonal pattern and inter‐annual fluctuations. The abundance of S. aurita peaked in spring and in autumn, whereas that of S. maderensis peaked in the warm season (July–September). The trend of the sardinella abundance was significantly correlated with the CUI, especially in autumn and spring. Interannual fluctuations of S. maderensis and S. aurita abundance are, respectively, driven by the precocity and the duration of the upwelling season that is attributed to distinct migration patterns. Both sardinella species also respond with a delay of around 4 years to the winter NAO index and the autumn CUI, and the AMO index, respectively, both related to migration patterns. The wide variations in sardinella biomass are caused by variations in environmental conditions, which should be considered in the implementation of an ecosystem‐based approach in sardinella stocks management.     

Long‐term changes in fishery resources of an estuary in southwestern Atlantic according to local ecological knowledge

Long‐term changes in the abundance of fisheries resources from the Patos Lagoon estuary and adjacent coastal waters in southern Brazil have been observed. Despite this understanding, it is well known that the perception of pristine state of the environment is susceptible to inter‐generational changes, commonly known as shifting baseline syndrome (SBS). An useful approach in the reconstruction of pristine scenarios and in lack of data, as often occurs in small‐scale fisheries, is the local ecological knowledge (LEK). Temporal changes in the perception of 81 fishers with 1–63 years of fishing about the resources status were analysed. More experienced fishers reported larger catches, heavier individuals and perceived a greater number of species as "scarce" nowadays and "common" at the beginning of their careers proving the existence of a SBS among them. Over time, the number of fishing sites with very high catches decreased and fishing sites shifted from the lower towards the upper estuary. The perception of the fishers corroborated the real decreasing scenario in estuarine fisheries resources shared with industrial fishing in coastal waters. The results reinforce the utility of LEK for reconstruction of biological scenarios when no empirically obtained data are available.     

A role for partially protected areas on coral reefs: maintaining fish diversity?

• 1. Completely banning fishing from coral reefs is now accepted to have significant benefits for marine biodiversity and in many cases, fisheries. However, the benefits of regulating fishing on coral reefs, by restricting the methods used, or the total amount of fishing, are less well understood, even though such regulations are much more likely to be supported by fishermen.
• 2. This study assesses whether banning illegal, destructive fishing methods and reducing the numbers of fishermen visiting from outside an area benefits a coral reef fishery, despite unregulated fishing by local fishermen using non‐destructive methods.
• 3. The abundance, biomass, mean length, and species richness of nine commercially important fish families are compared across ten independent patch reefs inside and outside the 470 km² Menai Bay Conservation Area in Zanzibar, Tanzania.
• 4. Even after taking into account the effect of differences in habitat and the distance between reefs, 61% (±19.7%) more fish species were found in regulated than unregulated reefs. Fish abundance, biomass, and length were not affected, suggesting that banning destructive fishing may improve biodiversity, but that further regulations may be required to improve fish stocks.Copyright © 2011 John Wiley & Sons, Ltd.

     

Using mixed stock analysis to assess source populations for at‐sea bycaught juvenile and adult loggerhead turtles (Caretta caretta) in the north‐west Atlantic

Assessments of fisheries by‐catch on marine megafauna are important for developing effective management strategies. For sea turtles, impacts may be evident in nesting population trends, but generally only after a lag, as turtles are slow to mature. We examined 850 loggerhead turtle (Caretta caretta) by‐catch samples collected over 14 years throughout the western North Atlantic to identify source nesting populations. We identified proportions of turtles from 19 distinct management units (MUs), using mitochondrial DNA and mixed stock analysis, considering population size. We found a significant split in the distribution of small versus large loggerheads to the north and south of Cape Hatteras, North Carolina (latitude 35°N). North of Cape Hatteras, large turtles came from south‐east Florida (SEFL; 44% ± 15%) and the northern United States (33% ± 16%) MUs, while south of Cape Hatteras, the major contributors were Central East Florida (52% ± 20%) and south‐east Florida (SEFL; 41% ± 20%). Small turtles in the north came from Central East Florida (64% ± 14%), and in the south, south‐east Florida had the highest representation (56% ± 25%). There was little contribution from Mediterranean and Cape Verde populations, indicating low risk from western North Atlantic by‐catch to MUs in the Mediterranean. Understanding where threats may impact source populations is important, particularly for larger size turtles, as these individuals have the highest reproductive value. These findings allow more informed threat assessments to be conducted for loggerhead turtles considering spatial and demographic structure.