Color analysis of storage roots from the USDA,ARS sweetpotato (<Emphasis Type="Italic">Ipomoea batatas</Emphasis>) germplasm collection

The United States Department of Agriculture (USDA), Agricultural Research Service (ARS), Plant Genetic Resources Conservation Unit in Griffin, GA maintains the United States germplasm collection for Ipomoea spp. (Convolvulaceae). During 2012–2014, 737 sweetpotato, Ipomoea batatas (L.) Lam., plant introductions (PI) were acquired as tissue-culture plantlets and then acclimated to greenhouse conditions at the USDA, ARS, U. S. Vegetable Laboratory (USVL), Charleston, SC. Single plants were transferred to plastic-covered plant beds to produce cuttings for replicated field trials. Storage roots were harvested from 690 PIs grown in the field and 695 PIs grown in pots. Color coordinates were obtained for each PI using a tristimulus colorimeter. Hue angle values (h*) ranged from 8.2° to 88.3° (\( \bar{x} \) = 54.9°) for the periderm (peel or skin) of field-grown storage roots (n = 690 PIs) and ? 9.4° (= 350.6°) to 96.2° (\( \bar{x} \) = 51.3°) for pot-grown roots (n = 695 PIs). The red–green coordinate (a*) ranged from 0.8 to 30.7 (\( \bar{x} \) = 12.8) for the periderm of field-grown roots and ? 2.0 to 44.9 (\( \bar{x} \) = 16.1) for pot-grown roots. The yellow–blue coordinate (b*) ranged from 2.8 to 33.1 (\( \bar{x} \) = 19.4) for the periderm of field-grown roots and ? 7.4 to 38.1 (\( \bar{x} \) = 19.3) for pot-grown roots. Color saturation (chroma, C*) ranged from 13.7 to 35.8 (\( \bar{x} \) = 24.9) for the periderm of field-grown roots and 14.9–45.5 (\( \bar{x} \) = 29.3) for pot-grown roots. Lightness (white–black, L*) ranged from 32.6 to 81.7 (\( \bar{x} \) = 54.6) for the periderm of field-grown roots and 32.1–88.2 (\( \bar{x} \) = 64.0) for pot-grown roots. Hue angles ranged from ? 13.1° (= 346.9°) to 100.9° (\( \bar{x} \) = 80.9°) for the stele (flesh) of field-grown storage roots (n = 672 PIs) and ? 29.9° to 103.5° (\( \bar{x} \) = 81.6°) for pot-grown roots (n = 676 PIs); a* ranged from ? 5.6 to 35.0 (\( \bar{x} \) = 8.0) for the stele of field-grown roots and ? 6.0 to 41.0 (\( \bar{x} \) = 7.6) for pot-grown roots; and b* ranged from ? 7.7 to 56.1 (\( \bar{x} \) = 34.6) for the stele of field-grown roots and ? 12.6 to 56.1 (\( \bar{x} \) = 31.8) for pot-grown roots. C* ranged from 12.7 to 65.8 (\( \bar{x} \) = 37.2) for the stele of field-grown roots and 8.9–65.7 (\( \bar{x} \) = 34.5) for pot-grown roots; and L* ranged from 27.8 to 91.1 (\( \bar{x} \) = 77.7) for the stele of field-grown roots and 28.2–91.9 (\( \bar{x} \) = 80.4) for pot-grown roots. There were significant relationships between stele color (h*) and percent dry matter, with orange stele having a significantly lower % dry matter (\( \bar{x} \) = 25.6%, n = 183) compared with roots with cream/white stele (\( \bar{x} \) = 30.8%, n = 373). There appears to be wide genetic diversity for root color characteristics for the United States sweetpotato germplasm collection.     

Bayesian Analysis of $$^{}$$Pb Dating

In studies of environmental change of the past few centuries, \(^{210}\)Pb dating is often used to obtain chronologies for sedimentary sequences. One of the most commonly used approaches to estimate the age of material at different depths in a sequence is to assume a constant rate of supply (CRS) or influx of ‘unsupported’ \(^{210}\)Pb from the atmosphere, together with a constant or varying amount of ‘supported’ \(^{210}\)Pb. Current \(^{210}\)Pb dating models do not use a proper statistical framework and provide poor estimates of the uncertainties. Here, we develop a new model for \(^{210}\)Pb dating, where ages and values of supported and unsupported \(^{210}\)Pb form part of the parameters. We apply our model to a case study from Canada as well as to some simulated examples. Our model can extend beyond the current CRS approach, deal with asymmetric errors and mix \(^{210}\)Pb with other types of dating, thus obtaining more robust, realistic and statistically better defined age estimates.     

Vis/NIR Chemical Imaging Technique for Predicting Sodium Humate Contents in Aquaculture Environment

This study aimed to develop a visible and near-infrared (Vis/NIR) chemical imaging (400–1000 nm) technique to provide rapid prediction of the contents of sodium humate dissolved in aquaculture environment. Gray reference image with 5% reflectance value was first used to correct the obtained raw images in order to promote the reflectance values as compared to that with 99% reflectance for further spectral analysis. Successive projection algorithm (SPA) was introduced to extract four optimal wavelengths, which were then used for the establishment of back-propagation artificial neural network (BP-ANN) models. The results revealed that the BP-ANN model based on the selected four optimal wavelengths better performed (\( {R}_C^2 \) = 0.986, \( {R}_{CV}^2 \) = 0.985, \( {R}_P^2 \) = 0.993, RMSEC = 0.329 mg/L, RMSECV = 0.433, RMSEP = 0.734 mg/L) than that based on the whole 381 wavelengths (\( {R}_C^2 \) = 0.978, \( {R}_{CV}^2 \) = 0.996, \( {R}_P^2 \) = 0.977, RMSEC = 0.388 mg/L, RMSECV = 0.625, RMSEP = 0.734 mg/L). Finally, a series of chemical images were developed to clearly display the concentration distribution of the sodium humate dissolved in water, demonstrating that Vis/NIR chemical imaging technique was feasible to quantify the contents of sodium humate in the aquatic environment and could be further used for real-time monitoring the quality of aquaculture water.     

Oxygen Transfer Numerical Investigation Using Intermittent Aeration Technology Under Regular Waves

Based on a combination of Reynolds-Averaged Navier-Stokes equations, standard k-ε equations, and VOF technique, a 2-D dissolved oxygen transport mathematical model was conducted to investigate oxygen-supply characteristics for regular waves with a given still water depth d and various hydrodynamic parameters (incident wave height H and wave period T equivalent to incident wave length L) and intermittent aeration parameters (air flow rate per unit width q, aeration period T_a, aeration depth d_a and air source area A_a). A series of experiments were conducted to validate the mathematical model, and they agreed well with each other. In addition, a series of dimensionless parameters were conducted to assess their relationships with oxygen transfer coefficient respectively. It was found that oxygen transfer coefficient increased slightly with the increase of \( q/{g}^2{T}_a^3 \). With the increasing \( {d}_a^2/{A}_a \), oxygen transfer coefficient increased obviously for the small \( {d}_a^2/{A}_a \) scenarios; however, it increased slightly for the high \( {d}_a^2/{A}_a \) scenarios. With increasing HL/d², a linear increase tendency of oxygen transfer coefficient appeared approximately. Furthermore, a simple prediction formula for oxygen transport coefficient was conducted using the numerical data, the dimensional analysis, and the least squares method, and it was validated well with the related experimental data.     

Optimal Estimation Versus MCMC for $$\mathrm{{CO}}_{2}$$ Retrievals

The Orbiting Carbon Observatory-2 (OCO-2) collects infrared spectra from which atmospheric properties are retrieved. OCO-2 operational data processing uses optimal estimation (OE), a state-of-the-art approach to inference of atmospheric properties from satellite measurements. One of the main advantages of the OE approach is computational efficiency, but it only characterizes the first two moments of the posterior distribution of interest. Here we obtain samples from the posterior using a Markov Chain Monte Carlo (MCMC) algorithm and compare this empirical estimate of the true posterior to the OE results. We focus on 600 simulated soundings that represent the variability of physical conditions encountered by OCO-2 between November 2014 and January 2016. We treat the two retrieval methods as ensemble and density probabilistic forecasts, where the MCMC yields an ensemble from the posterior and the OE retrieval result provide the first two moments of a normal distribution. To compare these methods, we apply both univariate and multivariate diagnostic tools and proper scoring rules. The general impression from our study is that when compared to MCMC, the OE retrieval performs reasonably well for the main quantity of interest, the column-averaged \(\mathrm{{CO}}_{2}\) concentration \(X_{\mathrm{{CO}}_{2}}\), but not for the full state vector \(\mathbf {X}\) which includes a profile of \(\mathrm{{CO}}_{2}\) concentrations over 20 pressure levels, as well as several other atmospheric properties.Supplementary materials accompanying this paper appear on-line.     

Genetic diversity of a <Emphasis Type="Italic">Coffea</Emphasis> Germplasm Collection assessed by RAPD markers

Genetic diversity and relationships within and among nine species of Coffea, one species of Psilanthus and the Piatã hybrid from the Coffee Germplasm Collection of Instituto Agronômico de Campinas (IAC), Brazil were assessed using RAPD markers. Genetic diversity and relationships were evaluated by proportion of polymorphic loci (P), Shannon’s genetic index (H′ and G′_ST) and clustering analysis. The overall RAPD variation among all accessions was mostly partitioned between rather than within species. However, C. canephora and C. liberica showed a high genetic diversity within the species (\({\underline{\hbox{H}'}} \) _sp = 0.414 and \({\underline{\hbox{H}'}} \) _sp = 0.380, respectively) and this was highly structured (high \({\underline{\hbox{G}'}} \) _ST). Genetic diversity from C. congensis and C. arabica was also structured, but with lower levels of genetic diversity (\({\underline{\hbox{H}'}} \) _sp = 0.218 and \({\underline{\hbox{H}'}} \) _sp = 0.126, respectively). The results were consistent with agronomic and molecular studies and demonstrated that the IAC Coffea Collection is representative of the phylogenetic structure observed in the genera. This study devises sampling strategies for coffee germplasm collections and provides genetic diversity parameters for future comparisons among them.     

The Allometric Quarter-Power Scaling Model and Its Applicability to Grand Fir and <Emphasis Type="Italic">Eucalyptus</Emphasis> Trees

The use of the allometric model \(y = \beta x ^{\alpha }\) to describe the relative growth of morphological traits of trees is a source of contention in ecology. This is particularly so in a specific form, the West, Brown and Enquist model, which predicts values of \(\alpha \) that are multiples of 1/4 for various allometric relationships—the quarter-power scaling law. We use statistical techniques to test the appropriateness of the quarter-power scaling allometric model in a number of different relative growth relationships of trees. Two separate datasets are used, one of repeated measures of Abies grandis (Grand fir) trees, another of independent measures of Eucalyptus trees. Nonlinear mixed-effects modelling is used to fit allometric models to the datasets. Generalised additive models, equivalence testing and traditional significance testing are used to assess the adequacy of the allometric models fitted and the values of the estimated exponents relative to those predicted by the WBE model. In only one of the five models fitted was there empirical evidence for the WBE-predicted quarter-power exponent. However, the adequacy of the allometric models was generally supported, though a need for further analysis over a larger range of tree ages/sizes is indicated.Supplementary materials accompanying this paper appear online.     

Comparison of Chemical Extraction Methods for Determination of Soil Potassium in Different Soil Types

Determining potassium supply of soil plays an important role in intensive crop production, since it is the basis for balancing nutrients and issuing fertilizer recommendations for achieving high and stable yields within economic feasibility. The aim of this study was to compare the different extraction methods of soil potassium from arable horizon of different types of soils with ammonium lactate method (K_AL), which is frequently used as analytical method for determining the accessibility of nutrients and it is a common method used for issuing fertilizer recommendations in many Europe countries. In addition to the ammonium lactate method (K_AL, pH 3.75), potassium was extracted with ammonium acetate (K_AA, pH 7), ammonium acetate ethylenediaminetetraacetic acid (K_AAEDTA, pH 4.6), Bray (K_BRAY, pH 2.6) and with barium chloride (\(K_{BaCl_2 }\), pH 8.1). The analyzed soils were extremely heterogeneous with a wide range of determined values. Soil pH reaction \(\left( {pH_{H_2 O} } \right)\) ranged from 4.77 to 8.75, organic matter content ranged from 1.87 to 4.94% and clay content from 8.03 to 37.07%. In relation to K_AL method as the standard method, \(K_{BaCl_2 }\) method extracts 12.9% more on average of soil potassium, while in relation to standard method, on average K_AA extracts 5.3%, K_AAEDTA 10.3%, and K_BRAY 27.5% less of potassium. Comparison of analyzed extraction methods of potassium from the soil is of high precision, and most reliable comparison was K_AL method with K_AAEDTA, followed by a: K_AA, \(K_{BaCl_2 }\) and K_BRAY method. Extremely significant statistical correlation between different extractive methods for determining potassium in the soil indicates that any of the methods can be used to accurately predict the concentration of potassium in the soil, and that carried out research can be used to create prediction model for concentration of potassium based on different methods of extraction.     

Acid-base properties of dark gray forest soil under different wood plants and agrocenosis

A comparative study of chemical properties of soils under wood plants (pine, oak, and birch) and agrocenosis was performed. The profile distribution and spatial heterogeneity of \(pH_{H_2 O} \), pH_KCl, total acidity, and exchangeable Ca²⁺ and Mg²⁺ in soils were described. Soil acidity conditions were characterized using discriminant analysis and principal components analysis.     

An Evaluation of Error Variance Bias in Spatial Designs

Spatial design and analysis are widely used, particularly in field experimentation. However, it is often the case that spatial analysis does not significantly enhance more traditional approaches such as row–column analysis. It is then of interest to gauge the degree of error variance bias that accrues when a spatially designed experiment is analysed as a row–column design. This paper uses uniformity data to study error variance bias in \(7\times 12\) spatial designs for 21 treatments.     

Response of lake trout (Salvelinus namaycush) and brook trout (S. fontinalis) to surface water acidification in Ontario

Netting surveys of lakes varying in pH (4.4–7.1) showed that lake trout (Salvelinus namaycush) populations fail to recruit at pH <5.5 and are lost from lakes with pH<5.2. Brook trout (S. fontinalis) were extirpated in lakes with pH <5.0. In regional chemical surveys of Ontario lakes, it was found that 2% of sampled brook trout lakes and 2.5% of lake trout lakes were acidified (alkalinity <0 uEq L^?1). Threshold pH levels determined from fisheries assessments were used to estimate that 1% of lake trout and brook trout populations have been lost due to acidification.     

Diversity in cowpea (<Emphasis Type="Italic">Vigna unguiculata</Emphasis> (L.) Walp.) local populations from Greece

Cowpea cultivation in many countries around the Mediterranean Basin depends on a number of locally adapted populations conserved on-farm at a small scale, rather than on the use of modern varieties. Documentation, characterization and exploitation of traditional local populations could contribute to their conservation and utilization as sources of desirable characteristics. Therefore, a study was conducted to (a) characterize, (b) assess diversity and (c) classify 23 on-farm conserved local cowpea populations based on 32 agro-morphological traits. Investigations on diversity of characteristics related to seed yield, mineral and seed crude protein content as well as on correlations among them were carried out. A relatively high phenotypic diversity was observed. In particular, a high level of within population diversity was found (\( \bar{H}s \) = 0.34) exceeding that among populations’ diversity (Gst = 0.27). Principal component analysis classified the majority of local populations into two groups (mainly according to populations’ seed coat color and eye color), further divided into six subgroups regardless of the populations’ geographical origin. Significant differences were also observed among the populations studied for potassium and calcium, as well as for their seed crude protein content which ranged from 22.14 to 28.37 %. The results show appreciable levels of intra- and inter-phenotypic diversity in on-farm conserved cowpea populations, which indicates the existence of a valuable gene pool for future exploitation in breeding programs.     

Adaptation of ecotypes and cultivars of subterranean clover (<Emphasis Type="Italic">Trifolium subterraneum</Emphasis> L.) to German environmental conditions and its suitability as living mulch

Abstract A total of 320 accessions of subterranean clover (Trifolium subterranenum L.) were screened for adaptation to the environmental conditions in southern Germany, as well as their suitability as cover crops or living mulches. The accessions, derived from collections of the Department of Agriculture and Food Western Australia and the International Research Center for Agriculture in Dry Areas, were propagated in the greenhouse and grown in rows. Selected accessions were then tested in plots and as an intercrop in wheat, in order to test their suitability as living mulch. Moreover, a frost resistance screening was carried out in a climate chamber. Adaptation to southern German conditions and frost tolerance was generally better than expected, as most accessions survived winters with snow cover and transitory temperatures as low as \(-\,10\,^\circ \)C. Accessions with particularly high frost tolerance were identified and several accessions persisted over four generations of self-reseeding. Although there was a large range of morphological characteristics, no differences concerning their suitability as living mulch could be observed. The results suggest that subterranean clover is sufficiently winter hardy to be grown as an overwintering cover crop or living mulch in southern Germany. Commercially available cultivars appear suitable in the first instance, even though these have not been selected for cold winters. However, adaptation might be further improved by targeted selection among accessions.     

Phosphorus Fertility Assessment of Intensively Farmed Areas of Catchments Draining to the Great Barrier Reef World Heritage Area; 2: Potential of Soils to Release Soluble Phosphorus

Abstract

The potential of fertilized cropping soils (sugarcane, vegetables, fruit trees) in river catchments that drain to the Great Barrier Reef World Heritage Area in northeastern Australia to release soluble phosphorus (P) was assessed using soil chemical tests on typical soils (0–10 cm) collected in 2003. Tests included total P, diagnostic soil P tests, estimates of P buffering, and soluble and redox sensitive soil P. Routine soil P tests proved poor predictors of CaCl₂ P (0.005 M). Values≥0.20 for the Mehlich‐3 P saturation ratio separated (P<0.01) lower from higher concentrations of CaCl₂ P. The ratio of Mehlich‐3 Fe to [Mehlich‐3 Fe+Mehlich‐3 Al] is offered as a possible simple index of redox sensitive P. Part 1 (Rayment and Bloesch 2006 Rayment, G. E. and Bloesch, P. M. 2006. Phosphorus fertility assessment of intensively farmed areas of catchments draining to the Great Barrier Reef World Heritage Area, 1: Soil phosphorus status. Communications in Soil Science and Plant Analysis, : 37 [Google Scholar]) describes the soil survey in more detail.     

Effects of oxalic acid and lime on the enchytraeid Cognettia sphagnetorum (VEJD) in mor humus

A two-factor orthogonal plan of experimental design was used to estimate a coupled influence of oxalic acid and lime on the enchytraeid Cognettia sphagnetorum in mor humus. Calcium carbonate (X ₁ ) in doses of 0, 300 and 600 mg per 10 g dry wt of mor humus and oxalic acid (X ₂ ) in doses of 0, 45 and 90 mg were added in accordance with the plan. Enchytraeid number (initial number — 50 per container) after three weeks of experiment was maximal at the medium calcium carbonate dose and absence of oxalic acid and minimal at the highest doses of the compounds. Influence of the compounds on the enchytraeid number (Y) is described by the second order equations: $$Y = 23.4 - 3.3X_1 - 6.8X_2 - 3.4X_1 X_2 - 7.7X_1 ^2 + 1.8X_2 ^2 {\text{ (in coded form) and}}$$ $$Y = 24.4 - .051X_1 - .157X_2 - .00025X_1 X_2 - .000085X_1 ^2 + .0009X_2 ^2 {\text{ (in natural form)}}$$ (in natural form). Negative effects of heavy liming can not be explained only by pH changes.     

Fertilizer application in aid of plantation establishment in the savanna areas of Nigeria

Fertilizer trials were conducted to stimulate tree establishment and growth in the savanna region of Nigeria. The main nutrients investigated were N, P, K and B while the tree species included Azadirachta indica (Neem), Acacia auriculiformis, Eucalyptus spp., and Pinus spp. Borate application reduced the incidence of die-back of eucalypts and it also increased height growth. There was positive response to phosphate application by all species; phosphate reduced mortality considerably in pines on some sites. Response to N fertilizer by the species varied and related to type of N fertilizer. Urea was often found injurious to pines. There was strong interaction between N and P and usually response to N was not obtained on P-deficient sites. In all the cases where it was applied, there was no response to K. On more arid sites with poorly buffered soils, mineral fertilizers alone were insufficient to produce satisfactory tree growth. Application of animal manure on such sites increased survival and growth of Azadirachta indica, E. camaldulensis and A. auriculiformis.     

Population dynamics of yellow perch (Perca flavescens) and pumpkinseed (Lepomis gibbosus) in two acid-stressed lakes

Fish population parameters: abundance, age-class composition, and size-at-age, which respond to environmental stresses, were investigated in two lakes showing chemical and biological evidence of acidification. Plastic Lake, Muskoka District of Ontario, shows spring pH depression and A1 toxicity in surface waters, with an associated annual fish kill. In Crosson Lake, pH 5.2 to 5.3, there has been a dramatic decline in abundance of the white sucker (Catostomus commersoni). In Platic Lake the abundance of pumpkinseed (Lepomis gibbosus) has declined and that of rock bass (Ambloplites rupestris) has increased. In Crosson Lake size-at-age has increased in yellow perch (Perca flavescens), pumpkinseed abundance has increased but with no change in growth rate.     

Fish species distribution in relation to lake acidity in Ontario

Survey data from approximately 2,900 Ontario lakes were used to examine the distribution of 12 fish species with respect to lake pH. Yellow perch (Perca flavescens), white sucker (Catostomus commersoni), brook trout (Salvelinus fontinalis), pumpkinseed (Lepomis gibbosus), fathead minnow (Pimephales promelas) and redbelly dace (Phoxinus eos) proved to be tolerant of low pH (pH <6.4). Lake trout (Salvelinus namaycush), common shiner (Notropis cornutus), blacknose shiner (Notropis heterolepis), lake whitefish (Coregonus clupeaformis), walleye (Stizostedion vitreum vitreum) and northern pike (Esox lucius) showed limited distribution in low pH lakes (pH <6.4). The limited distribution of lake whitefish and northern pike likely relates to zoogeographic factors rather than their intolerance to low pH. Lake trout and common shiner occur in lakes susceptible to, and receiving high loadings of acidic deposition. However, without historical data, we cannot determine if their decreased distribution in low pH systems is due to intolerance to low pH.     

Phosphorus Fertility Assessment of Intensively Farmed Areas of Catchments Draining to the Great Barrier Reef World Heritage Area; 1: Soil Phosphorus Status

Abstract

Australia's reef water quality protection plan has a key objective: “reduce the load of pollutants from diffuse sources in the water entering the Reef.” This article reports on a survey to assess the contemporary phosphorus (P) status of fertilized cropping soils across 21 catchments in coastal Queensland, Australia. The survey focused on surface soils from cane farms, vegetable and subtropical/tropical fruit tree sites. There were sampling depth effects on P levels in sugar and fruit tree sites (lower with depth). Importantly, 84% of 105 sugarcane sites were excessively fertile and only 3% rated low (P deficient). Some 75% of 16 vegetable sites and 38% of 8 fruit tree sites had excess ratings for extractable soil P fertility. Highest total P levels (0–10 cm) occurred in fruit tree sites, followed by vegetable and sugarcane soils. There are regional differences in P soil fertility, and the recycling of mill by‐products needs attention. Part 2 (Bloesch and Rayment 2006 Bloesch, P. M. and Rayment, G. E. 2006. “Phosphorus fertility assessment of intensively farmed areas of catchments draining to the Great Barrier Reef World Heritage Area, 2: Potential of soils to release soluble phosphorus”. In Communications in Soil Science and Plant Analysis 37 [Google Scholar]) examines the potential of these soils to release soluble P in a nutrient‐sensitive area.     

Fertilizer application in aid of plantation establishment in the savanna areas of Nigeria

Fertilizer trials were conducted to stimulate tree establishment and growth in the savanna region of Nigeria. The main nutrients investigated were N, P, K and B while the tree species includedAzadirachta indica (Neem),Acacia auriculiformis, Eucalyptus spp., andPinus spp. Borate application reduced the incidence of die-back of eucalypts and it also increased height growth. There was positive response to phosphate application by all species; phosphate reduced mortality considerably in pines on some sites. Response to N fertilizer by the species varied and related to type of N fertilizer. Urea was often found injurious to pines. There was strong interaction between N and P and usually response to N was not obtained on P-deficient sites. In all the cases where it was applied, there was no response to K. On more arid sites with poorly buffered soils, mineral fertilizers alone were insufficient to produce satisfactory tree growth. Application of animal manure on such sites increased survival and growth ofAzadirachta indica, E. camaldulensis andA. auriculiformis.