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A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
Authors:Mural Richard J  Adams Mark D  Myers Eugene W  Smith Hamilton O  Miklos George L Gabor  Wides Ron  Halpern Aaron  Li Peter W  Sutton Granger G  Nadeau Joe  Salzberg Steven L  Holt Robert A  Kodira Chinnappa D  Lu Fu  Chen Lin  Deng Zuoming  Evangelista Carlos C  Gan Weiniu  Heiman Thomas J  Li Jiayin  Li Zhenya  Merkulov Gennady V  Milshina Natalia V  Naik Ashwinikumar K  Qi Rong  Shue Bixiong Chris  Wang Aihui  Wang Jian  Wang Xin  Yan Xianghe  Ye Jane  Yooseph Shibu  Zhao Qi  Zheng Liansheng  Zhu Shiaoping C  Biddick Kendra  Bolanos Randall  Delcher Arthur L  Dew Ian M  Fasulo Daniel  Flanigan Michael J  Huson Daniel H
Institution:Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA. richard.mural@celera.com
Abstract:The high degree of similarity between the mouse and human genomes is demonstrated through analysis of the sequence of mouse chromosome 16 (Mmu 16), which was obtained as part of a whole-genome shotgun assembly of the mouse genome. The mouse genome is about 10% smaller than the human genome, owing to a lower repetitive DNA content. Comparison of the structure and protein-coding potential of Mmu 16 with that of the homologous segments of the human genome identifies regions of conserved synteny with human chromosomes (Hsa) 3, 8, 12, 16, 21, and 22. Gene content and order are highly conserved between Mmu 16 and the syntenic blocks of the human genome. Of the 731 predicted genes on Mmu 16, 509 align with orthologs on the corresponding portions of the human genome, 44 are likely paralogous to these genes, and 164 genes have homologs elsewhere in the human genome; there are 14 genes for which we could find no human counterpart.
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