CO2 evolution and denaturing gradient gel electrophoresis profiles of bacterial communities in soil following addition of low molecular weight substrates to simulate root exudation |
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Authors: | L Falchini N NaumovaPJ Kuikman J BloemP Nannipieri |
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Institution: | a Dipartimento di Scienza del Suolo e Nutrizione della Pianta, Università degli studi di Firenze, Piazzale delle Cascine, 28, I-50144 Firenze, Italy b Institute of Soil Science and Agrochemistry, Sovetskaya 18, 620099 Novosibirsk, Russian Federation c Alterra, Department of Water and the Environment, Droevendaalsesteeg 3, P.O. Box 47, 6700 AA Wageningen, Netherlands |
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Abstract: | Simulating the evolution of both 14C and 12C-CO2 in the rhizoplane was monitored during the diffusion of 14C-labelled glucose, oxalic acid, or glutamic acid into soil from a filter placed on the surface of a sandy loam. After 3 and 7 d, soil was sampled from four layers (0-2, 2-4, 4-6, and 6-14 mm) to determine residual 14C in each layer. The mineralisation pattern of oxalic acid was characterised by a lag phase probably due to the presence, in the early stages of exposure, of a few microorganisms able to mineralise this substrate. Glucose and glutamic acid showed a positive priming effect with a CO2 flush from native organic matter. Oxalic and glutamic acids changed the denaturing gradient gel electrophoresis profiles of soil bacterial communities with the appearance of a few extra-bands in the 0-2 mm soil layer. The addition of the substrates onto the soil surface formed a gradient due to their diffusion in soil. That of oxalic acid was specific probably because almost all of this compound reacted with CaCO3 and was localised in the 0-2 mm soil layer. |
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Keywords: | Root exudates Soil bacterial community Soil respiration Denaturing gradient gel electrophoresis |
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