Multi-Locus DNA Fingerprinting of Channel Catfish Ictalurus punctatus

Abstract.— Similarities among multi-locus DNA fingerprints of five channel catfish Ictalurus punctatus strains and the ability to identify the strain of a fish based on its fingerprint pattern were investigated. Five restriction enzymes and 13 multi-locus DNA probes were screened to identify enzyme-probe combination useful for DNA fingerprinting channel catfish. Restriction enzymes Hinf I and Dpn II, in combination with probes (CAC)n, (CGC)n, (CTC)n, (ATCC)n, and (GATA)n, produced useful fingerprints (20–30 resolvable bands for each enzyme-probe combination). Thirty individuals (3 pools of 10 individuals each) from each of five channel catfish strains (albino, Mississippi normal, USDA-102, USDA-102 select, and USDA-103) were fingerprinted with all useful enzyme-probe combinations. Band sharing among samples was higher within strains than among strains and band sharing among strains was higher for strains whose breeding history indicated a high degree of relatedness. Individual fingerprints of 18 fish from each of the USDA-102 select and USDA-103 strains revealed no strain-specific bands, but several diagnostic bands (present at high frequencies in either USDA-102 select or USDA-103 strains and at a low frequencies in other strains) were identified. Band sharing at diagnostic bands was used to correctly identify fish as USDA-102 select or USDA-103 strains with 82% accuracy from fingerprints of 17 USDA-102 select strain fish, 18 USDA-103 strain fish, and 38 fish collected from three commercial farms.