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传染性造血器官坏死病毒毒株核蛋白基因片段的克隆及序列分析
引用本文:韩硕,赵前程,吴斌,李叶,王玫.传染性造血器官坏死病毒毒株核蛋白基因片段的克隆及序列分析[J].大连水产学院学报,2011,26(3):232-237.
作者姓名:韩硕  赵前程  吴斌  李叶  王玫
作者单位:1. 大连海洋大学,食品工程学院,辽宁大连116023
2. 辽宁出入境检验检疫局,辽宁大连,116001
基金项目:国家质量监督检验检疫总局科技项目
摘    要:利用RTG~2细胞对传染性造血器官坏死病毒(IHNV)的敏感性对IHNV-DL进行扩增,采用TR—Izol法提取病毒RNA,用IHNV核蛋白基因的一对通用引物进行RT-PCR扩增,将扩增出的一条786bp的基因纯化、克隆至pMD18-T载体中进行序列测定,并与国内外已公布的病毒核蛋白基因进行比对和分析。结果表明:此病毒的核酸序列与标准毒株RB-1、代表毒株WRAC的同源性分别为96.3%和93.6%;翻译出的氨基酸序列与标准毒株RB-1、代表毒株WRAC的同源性分别为96.1%和93.5%。系统进化树分析结果表明,此毒株与中国近期公布的毒株zyx有密切的亲缘关系。

关 键 词:传染性造血器官坏死病毒  纯化  克隆  序列分析

Cloning and sequencing of nucleocapsid protein in infectious hematopoietic necrosis virus strain
HAN Shuo,ZHAO Qian-cheng,WU Bin,LI Ye,WANG Mei.Cloning and sequencing of nucleocapsid protein in infectious hematopoietic necrosis virus strain[J].Journal of Dalian Fisheries University,2011,26(3):232-237.
Authors:HAN Shuo  ZHAO Qian-cheng  WU Bin  LI Ye  WANG Mei
Institution:1. School of Food Engineering, Dalian Ocean University, Dalian 116023, China ;2. Liaoning Entry-Exit Inspection and Quarantine Bureau, Dalian 116001, China)
Abstract:The infectious hematopoietic necrosis virus (IHNV-DL) was amplified by RTG-2 cells, and the RNA in IHNV-DL was extracted by the TRIzol method. A gene of 786 bp was amplified from the nucleoprotein gene of IHNV-DL and cloned to the vector of pMD18-T in which the gene was sequenced and compared with the nucleoprotein gene of virus which was published. The results showed that the homology of nucleotide sequence was found to be 96.3% between the amplified products of the samples and IHNV reference strain RB-1, and 93.6% between the amplified products of samples and IHNV representative strain WRAC, with the homology of 96.1% and 93.5% between the induced amino acids sequence. The phylogenetic tree showed that the strain had a close relationship with the strain zyx published recently.
Keywords:infectious haematopoietic necrosis virus (IHNV)  purification  cloning  sequence analysis
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