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基于SSR标记的菠萝种质DNA指纹图谱构建
引用本文:王健胜,贺军虎,陈华蕊,陈业渊. 基于SSR标记的菠萝种质DNA指纹图谱构建[J]. 热带作物学报, 2015, 36(7): 1274-1279
作者姓名:王健胜  贺军虎  陈华蕊  陈业渊
作者单位:平顶山学院;中国热带农业科学院热带作物品种资源研究所农业部海南省热带作物种质资源遗传改良与创新重点实验室;中国热带农业科学院热带作物品种资源研究所农业部海南省热带作物种质资源遗传改良与创新重点实验室;中国热带农业科学院热带作物品种资源研究所农业部海南省热带作物种质资源遗传改良与创新重点实验室
基金项目:中央级公益性科研院所基本科研业务费专项(No. 1630032013025);国家国际科技合作专项项目“中南美洲热带作物种质资源收集与合作研究(No. 2011DFB31690)”;平顶山学院国家基金培育项目(No. XY-PYJJ-2014002)。
摘    要:以来自9个国家或地区的26份菠萝种质为材料,利用SSR标记进行了DNA指纹图谱的构建。筛选出多态性高、稳定性好的8对SSR引物共检测到35个多态性位点,每对引物的多态性位点数平均为4.38,引物的多态性条带百分比平均高达92.92%,PIC值介于0.26~0.39之间,平均为0.33。利用这8对SSR引物构建了26份菠萝种质的指纹图谱,并对菠萝种质做遗传相似性分析和聚类分析。结果表明,菠萝种质遗传相似系数分布在0.421~0.974之间,平均为0.689,26份菠萝种质在遗传相似系数0.633处被划分为3类。该研究结果将为菠萝种质鉴定、分类及分子育种提供重要科学依据。

关 键 词:菠萝;SSR;指纹图谱

Construction of DNA Fingerprint for Pineapple Germplasm Based on SSR Marker
WANG Jiansheng,HE Junhu,CHEN Huarui and CHEN Yeyuan. Construction of DNA Fingerprint for Pineapple Germplasm Based on SSR Marker[J]. Chinese Journal of Tropical Crops, 2015, 36(7): 1274-1279
Authors:WANG Jiansheng  HE Junhu  CHEN Huarui  CHEN Yeyuan
Affiliation:Pingdingshan University;Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Tropical Crops Resources Germplasm Genetic Improvement and Innovation in Hainan Province;Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Tropical Crops Resources Germplasm Genetic Improvement and Innovation in Hainan Province;Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Tropical Crops Resources Germplasm Genetic Improvement and Innovation in Hainan Province
Abstract:DNA fingerprints were constructed for 26 pineapple lines originated from nine countries or regions based on SSR marker. Totally, 35 polymorphic alleles were detected using eight SSR primers with the higher polymorphism and the better stability, with an average 4.38 polymorphic alleles for each primer. For SSR primers, the percentages of polymorphic bands to total producing bands reached 92.92%, and the polymorphism information content values varied from 0.26 to 0.39 with an average of 0.33. DNA fingerprints were constructed for 26 pineapple germplasms with the eight SSR primers. The genetic similarity analysis and cluster analysis were also conducted for these pineapple lines, and the genetic similarities coefficient among pineapple lines ranged from 0.421 to 0.974 with an average of 0.689. The 26 pineapple germplasms were divided into three groups at the genetic similarities coefficient of 0.633. These results would provide an important scientific basis for pineapple germplasm identification, classification and molecular breeding of pineapple.
Keywords:Pineapple   SSR marker   DNA fingerprint
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