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大白菜抗芜菁花叶病毒(TuMV)EST-SSR信息分析与引物筛选
引用本文:张晓亮 张志刚 赵智中 宋希云 李巧云. 大白菜抗芜菁花叶病毒(TuMV)EST-SSR信息分析与引物筛选[J]. 中国农学通报, 2012, 28(10): 121-126. DOI: 10.11924/j.issn.1000-6850.2011-2901
作者姓名:张晓亮 张志刚 赵智中 宋希云 李巧云
作者单位:1. 青岛农业大学生命科学学院,山东青岛,266000
2. 山东省农业科学院蔬菜所/国家蔬菜改良中心山东分中心/山东省设施蔬菜生物学重点实验室,济南,250100
基金项目:山东省现代农业产业技术体系(SCTX2011)
摘    要:为了研究大白菜抗芜菁花叶病毒(TuMV),对大白菜及芸薹属中与抗性有关的EST序列进行了搜索和SSR筛选,并根据SSR两端的序列设计引物,以1对大白菜TuMV抗、感材料的基因组DNA为模板,对上述引物进行了筛选。结果表明,在132条大白菜EST和895条芸薹属抗性EST序列中,共筛选出166个符合条件的SSR(16.2%)。其中包含6种核苷酸重复基元,占主导地位的分别是二核苷酸重复(33.7%)和三核苷酸重复(50.0%),其余重复类型所占比例较小。根据上述SSR两翼的序列,共设计引物196对。引物筛选结果表明,能够进行成功扩增的有156对,占79.6%,其中35对引物在2份材料中具有多态性。因此,利用芸薹属中抗性有关的EST序列设计SSR引物,可用于大白菜TuMV抗性有关基因的标记。

关 键 词:土地集约利用  土地集约利用  相对效率评价  数据包络分析  投影分析  长沙市  
收稿时间:2011-10-09
修稿时间:2011-12-20

AnalEST-SSR Analysis and Primer Screening of Turnip Mosaic Virus (TuMV) Resistance in Chinese Cabbage
Zhang Xiaoliang , Zhang Zhigang , Zhao Zhizhong , Song Xiyun , Li Qiaoyun. AnalEST-SSR Analysis and Primer Screening of Turnip Mosaic Virus (TuMV) Resistance in Chinese Cabbage[J]. Chinese Agricultural Science Bulletin, 2012, 28(10): 121-126. DOI: 10.11924/j.issn.1000-6850.2011-2901
Authors:Zhang Xiaoliang    Zhang Zhigang    Zhao Zhizhong    Song Xiyun    Li Qiaoyun
Affiliation:1 Collage of Life Science,Qingdao Agricultural University ,Qingdao Shandong 26600; 2 Institute of Vegetable Research,Shandong Academy of Agricultural Sciences / National Improvement Center for Vegetable , Shandong branch / Key Laboratory for Biology of Greenhouse Vegetable of Shandong Province ,Jinan 250100)
Abstract:In order to study turnip mosaic virus(TuMV) in Chinese cabbage,ESTs in Chinese cabbage and resistant ESTs in Brassica were searched and SSRs were screened.Primers were designed according to the sides sequence and were screened using the genome DNA of one pair of TuMV resistant and susceptible materials of Chinese cabbage as templates.The results showed that a total of 166(16.2%) SSRs were screened from 132 Chinese cabbage ESTs and 895 resistant ESTs of Brassica,among which there were six kinds of nucleotide repeat motifs,the dinucleotide(33.7%) and trinucleotide(50.0%) repeats were the main types, proportions for other repeat types were much small.196 primers were designed according to the sides sequence of the above SSRs,among which 156(79.6%) were amplified successfully,and 35 primers were amplified polymorphic in the two materials.Therefore,SSR primers designed from Brassica resistant EST sequences could be used in marking of TuMV resistant genes of Chinese cabbage.
Keywords:Chinese cabbage  turnip mosaic virus  EST-SSR
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