AFLP similarities among historic Danish cultivarsof fodder beet (Beta vulgaris L. subsp. vulgarisvar. rapacea Koch) |
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Authors: | Gert Poulsen Claus Holten Roland von Bothmer |
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Affiliation: | (1) Danish Institute of Agricultural Sciences, Kirstinebjergvej 10, DK-5792 Aarslev, Denmark;(2) Nordic Gene Bank, Box 41, SE-230 53 Alnarp, Sweden;(3) Department of Crop Science, Swedish University of Agricultural Sciences, Box 44, SE-230 53 Alnarp, Sweden |
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Abstract: | Dead seeds of a fodder beet cultivar ‘Elvetham’ stored under ambient conditions since 1880 were compared to a homonymous sample preserved in an on-farm situation in Denmark. DNA was isolated from single seeds and successfully applied to Amplified Fragment Length Polymorphism (AFLP) analysis of the accessions. Six primer pairs were used to determine the similarity between the two accessions based on 112 polymorphic bands. Furthermore, similarity among seven cultivars of fodder beets representing the main types used in Scandinavia at the end of the 19th century was determined. This analysis was based on 152 polymorphic bands. Differentiation among the seven cultivars was determined to a mean G ST value of 0.438, while G ST between the two ‘Elvetham’ accessions was 0.266. A principal coordinate analysis based on jaccards similarity index illustrates that the two ‘Elvetham’ accessions are different from each other. The differentiation is higher than the value found between two separate ‘Eckerndorfer’ accessions. The results indicate that the cultivated accession has changed. Additionally, the value of applying old dead seed material for documentation in gene banks is demonstrated. During the analysis it was found that DNA isolated from seeds and leaves behaved differently in the AFLP process, however, the two fractions assigned to their common accession. |
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Keywords: | Beta vulgaris AFLP Dead seed DNA isolation Documentation Genotype identification Old seed Plant genetic resources |
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