Analysis of polymorphisms of cathepsin B and cystatin B impact on economically important traits in pigs raised in Poland

The cathepsins belong to an enzyme family of lysosomal proteinases, which have a wide spectrum of function in a lot of tissues and cell types. Cathepsin B is one of intracellular proteases, whose role is to carboxydipeptidyl activity. In turn, the cystatin B (CSTB) is an intracellular thiol proteinase inhibitor. In pigs, CTSB was mapped on 14 chromosome and linked to loci genes ATP2A2, ACTN2 and ACTA1, in the region where suggestive QTL for fat deposition and meat content were identified. The CSTB gene is localized on telomeric end (1/2) q46–q49 of SSC13 and on this chromosome QTLs for daily gain and birth weight were identified. Our investigation concerned analysis of effects A72C CTSB polymorphism and Asp62Asn CSTB missense mutation on carcass traits in Polish pigs population. The significant results of A72C of CTSB mutation was observed for several growth traits in Pietrain pigs. AC genotype characterized higher carcass yield and weight of ham and loin than in AA pigs (AC — 79.3%, 6.90 kg and 10.2 kg; AA — 77.8, 6.52 and 9.89, P < 0.01). The significant effect of Asp62Asn CSTB was in two traits of Polish Large White pigs: AA animals had higher daily gain and lower number days in test compared to animals with GG genotype (AA — 973 g, 162 days; GG — 882 g, 172 days) with favorable additive genetic effects of allele g173A on LSM. The selection on A allele of CSTB should lead to increasing level of fat. In turn, increasing in population, a C allele of CTSB should affect better meat content parameters in pig population. Overall, these two polymorphisms seem not to be directly association with carcass traits, but probably are linked to unknown QTLs localized on 13 and 14 chromosomes.