The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes |
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Authors: | James C Estill Jeffrey L Bennetzen |
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Institution: | (1) Department of Plant Biology, The University of Georgia, Athens, Georgia 30602-7271, USA;(2) Department of Genetics, The University of Georgia, Athens, Georgia 30602-7223, USA |
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Abstract: | Background High quality annotation of the genes and transposable elements in complex genomes requires a human-curated integration of
multiple sources of computational evidence. These evidences include results from a diversity of ab initio prediction programs as well as homology-based searches. Most of these programs operate on a single contiguous sequence at
a time, and the results are generated in a diverse array of readable formats that must be translated to a standardized file
format. These translated results must then be concatenated into a single source, and then presented in an integrated form
for human curation. |
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Keywords: | |
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