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De Novo Next Generation Sequencing of Plant Genomes
Authors:Steve Rounsley  Pradeep Reddy Marri  Yeisoo Yu  Ruifeng He  Nick Sisneros  Jose Luis Goicoechea  So Jeong Lee  Angelina Angelova  Dave Kudrna  Meizhong Luo  Jason Affourtit  Brian Desany  James Knight  Faheem Niazi  Michael Egholm  Rod A Wing
Institution:1. BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ, 85721, USA
2. Arizona Genomics Institute, University of Arizona, Tucson, AZ, 85721, USA
3. Department of Plant Sciences, University of Arizona, Tucson, AZ, 85721, USA
4. 454 Life Sciences, 20 Commercial Street, Branford, CT, 06405, USA
Abstract:The genome sequencing of all major food and bioenergy crops is of critical importance in the race to improve crop production to meet the future food and energy security needs of the world. Next generation sequencing technologies have brought about great improvements in sequencing throughput and cost, but do not yet allow for de novo sequencing of large repetitive genomes as found in most crop plants. We present a strategy that combines cutting edge next generation sequencing with “old school” genomics resources and allows rapid cost-effective sequencing of plant genomes.
Keywords:
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