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Currently, agricultural science and technology research archives are facing historical changes brought about by the digital economy. Based on the connotation value of agricultural scientific research archives, this article discusses the innovative development model and path of agricultural scientific research archives in the digital environment. Guided by deepening the resource value of agricultural scientific research archives, analyze and apply digital technology to solve the practical strategies and technical schemes for the integrated management of digital data of traditional agricultural scientific research archives and current digital agricultural scientific research archives. Analyze the impact of the high-quality construction of traditional carrier digital data and current digital agricultural scientific research files on the value of resources and service benefits. Finally, from the high-quality construction of digital agricultural scientific research archives resources, deepening the value of archive digital data information, maintaining effective services and ownership security of archives data, innovating management mechanisms to support the benefits and significance of the digital innovation transformation and development of agricultural scientific research archives.